151 |
0.01691 |
0.3749 |
b2442 |
intZ |
-12.49 |
0.088679 |
278 -- 291 |
17 -- 31 |
CPZ-55 prophage; putative phage integrase |
b2349 |
_____________277_________________292\n_____________|___________________|\n5'-ACA...AAACU____________C_G____CGGGG...UGC-3'\n______________CACCGAU__UCA_U_ACGC\n______________||||:||__|||_|_||:|\n______________GUGGUUA__AGU_A_UGUG\n3'-UUU...AAAAU_______UG___C_G____UACUA...UAG-5'\n_____________|___________________|\n_____________32__________________16\n |
269 -- 275 |
180 -- 186 |
-14.1411 kcal/mol |
1.5591 kcal/mol |
4.88042 kcal/mol |
277 292@LB@ | |@LB@5'-ACA...AAACU C G CGGGG...UGC-3'@LB@ CACCGAU UCA U ACGC@LB@ ||||:|| ||| | ||:|@LB@ GUGGUUA AGU A UGUG@LB@3'-UUU...AAAAU UG C G UACUA...UAG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -14.1411 kcal/mol@LB@Unfolding Energy - mRNA 1.5591 kcal/mol@LB@Unfolding Energy - sRNA 4.88042 kcal/mol@LB@@LB@Position - mRNA 278 -- 291@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 180 -- 186@LB@ |
177 |
0.02028 |
0.3833 |
b1732 |
katE |
-12.45 |
0.090323 |
227 -- 246 |
168 -- 187 |
catalase HPII heme d-containing |
|
_____________226___________________247\n_____________|_____________________|\n5'-UGG...AACCC_______C__________C__UACAC...ACG-3'\n______________ACAUCAG_AC_CAGUCAC_AC\n______________|||:||:_||_|||||||_||\n______________UGUGGUU_UG_GUCAGUG_UG\n3'-UUU...UAAAA_______A__A__________UACUA...UAG-5'\n_____________|_____________________|\n_____________188___________________167\n |
237 -- 243 |
170 -- 176 |
-19.9766 kcal/mol |
1.23864 kcal/mol |
4.88067 kcal/mol |
226 247@LB@ | |@LB@5'-UGG...AACCC C C UACAC...ACG-3'@LB@ ACAUCAG AC CAGUCAC AC@LB@ |||:||: || ||||||| ||@LB@ UGUGGUU UG GUCAGUG UG@LB@3'-UUU...UAAAA A A UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -19.9766 kcal/mol@LB@Unfolding Energy - mRNA 1.23864 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 227 -- 246@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 170 -- 176@LB@ |
10 |
0.0006004 |
0.1842 |
b3656 |
yicI |
-12.42 |
0.091283 |
58 -- 101 |
169 -- 207 |
putative alpha-glucosidase |
|
_____________57_________102\n_____________|__________|\n5'-ACA...GAUAA__________G-3'\n______________UGAAAUGGUG\n______________|:||||:|||\n______________AUUUUAUCAC\n3'-UUU...GCGCC__________GACUA...UAG-5'\n_____________|__________|\n_____________208________168\n |
293 -- 299 |
40 -- 46 |
-9.13222 kcal/mol |
0.486237 kcal/mol |
4.51378 kcal/mol |
57 102@LB@ | |@LB@5'-ACA...GAUAA G-3'@LB@ UGAAAUGGUG@LB@ |:||||:|||@LB@ AUUUUAUCAC@LB@3'-UUU...GCGCC GACUA...UAG-5'@LB@ | |@LB@ 208 168@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -9.13222 kcal/mol@LB@Unfolding Energy - mRNA 0.486237 kcal/mol@LB@Unfolding Energy - sRNA 4.51378 kcal/mol@LB@@LB@Position - mRNA 58 -- 101@LB@Position - sRNA 169 -- 207@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 40 -- 46@LB@ |
183 |
0.02111 |
0.3833 |
b0461 |
tomB |
-12.41 |
0.091700 |
125 -- 158 |
128 -- 160 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________124_________________________________________159\n_____________|___________________________________________|\n5'-UGC...GGAUG________CCCAAA_G_______AUC____C__C____G____UCUGU...AUC-3'\n______________AAUACUCA______A_ACAUGAU____GCA_AG_UUAA_UUUC\n______________||||||||______|_|||||||____|||_||_|:||_||||\n______________UUAUGAGU______U_UGUACUA____CGU_UC_AGUU_AAAG\n3'-UUU...UGUGG________CAG____G_______CGUC___________G____UCUUA...UAG-5'\n_____________|___________________________________________|\n_____________161_________________________________________127\n |
224 -- 230 |
163 -- 169 |
-23.2008 kcal/mol |
3.84731 kcal/mol |
8.26055 kcal/mol |
124 159@LB@ | |@LB@5'-UGC...GGAUG CCCAAA G AUC C C G UCUGU...AUC-3'@LB@ AAUACUCA A ACAUGAU GCA AG UUAA UUUC@LB@ |||||||| | ||||||| ||| || |:|| ||||@LB@ UUAUGAGU U UGUACUA CGU UC AGUU AAAG@LB@3'-UUU...UGUGG CAG G CGUC G UCUUA...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -12.41 kcal/mol@LB@Hybridization Energy -23.2008 kcal/mol@LB@Unfolding Energy - mRNA 3.84731 kcal/mol@LB@Unfolding Energy - sRNA 8.26055 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 163 -- 169@LB@ |
88 |
0.009956 |
0.3575 |
b2672 |
ygaM |
-12.38 |
0.093122 |
193 -- 231 |
56 -- 92 |
putative membrane-anchored DUF883 family ribosome-binding protein |
|
_____________192______232\n_____________|________|\n5'-AAC...UGAAC________AGAAA...AGU-3'\n______________CUCAGUUA\n______________||||||:|\n______________GAGUCAGU\n3'-UUU...GUUAU________GUGUA...UAG-5'\n_____________|________|\n_____________93_______55\n |
142 -- 148 |
171 -- 177 |
-10.1878 kcal/mol |
1.87036 kcal/mol |
0.207782 kcal/mol |
192 232@LB@ | |@LB@5'-AAC...UGAAC AGAAA...AGU-3'@LB@ CUCAGUUA@LB@ ||||||:|@LB@ GAGUCAGU@LB@3'-UUU...GUUAU GUGUA...UAG-5'@LB@ | |@LB@ 93 55@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -10.1878 kcal/mol@LB@Unfolding Energy - mRNA 1.87036 kcal/mol@LB@Unfolding Energy - sRNA 0.207782 kcal/mol@LB@@LB@Position - mRNA 193 -- 231@LB@Position - sRNA 56 -- 92@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 171 -- 177@LB@ |
78 |
0.008099 |
0.3458 |
b2810 |
csdA |
-12.29 |
0.097398 |
132 -- 155 |
3 -- 23 |
cysteine sulfinate desulfinase |
|
_____________131_______________156\n_____________|_________________|\n5'-CUU...GGUUA____U________A___AAGUG...AAG-3'\n______________GCAC_CUCCUUGU_UCA\n______________||||_|:|||||:_|||\n______________CGUG_GGGGAACG_AGU\n3'-UUU...UACCC_____________A___AG-5'\n_____________|_________________|\n_____________24________________2\n |
145 -- 151 |
7 -- 13 |
-20.4088 kcal/mol |
3.04417 kcal/mol |
7.17675 kcal/mol |
131 156@LB@ | |@LB@5'-CUU...GGUUA U A AAGUG...AAG-3'@LB@ GCAC CUCCUUGU UCA@LB@ |||| |:|||||: |||@LB@ CGUG GGGGAACG AGU@LB@3'-UUU...UACCC A AG-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -20.4088 kcal/mol@LB@Unfolding Energy - mRNA 3.04417 kcal/mol@LB@Unfolding Energy - sRNA 7.17675 kcal/mol@LB@@LB@Position - mRNA 132 -- 155@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 7 -- 13@LB@ |
31 |
0.002426 |
0.2633 |
b2593 |
yfiH |
-12.28 |
0.097562 |
144 -- 222 |
126 -- 203 |
UPF0124 family protein |
|
_____________143___________________________________________________________________________223\n_____________|_____________________________________________________________________________|\n5'-CCA...AUUGA______GC______________AAGA_____AG_____________G____GG___U____AA__U_A_________AGUGG...CAC-3'\n______________GGUGAU___GCGCCGAU_UUCG____ACAUA__GAUG_____AAGU_GACU__UUA_GAGU__GC_G_UUGUCCCGC\n______________||||||___:|:||:||_:||:____|||:|__||||_____||||_:|||__|:|_||:|__||_|_|::||||:|\n______________CCACUA___UGUGGUUA_GAGU____UGUGU__CUAC_____UUCA_UUGA__AGU_CUUA__CG_C_AGUAGGGUG\n3'-UUU...ACCGC______AAA________U____CAG______A_____GUCCG____G____A_________A___C___________ACGUA...UAG-5'\n_____________|_____________________________________________________________________________|\n_____________204___________________________________________________________________________125\n |
216 -- 222 |
126 -- 132 |
-51.0225 kcal/mol |
17.9985 kcal/mol |
20.5417 kcal/mol |
143 223@LB@ | |@LB@5'-CCA...AUUGA GC AAGA AG G GG U AA U A AGUGG...CAC-3'@LB@ GGUGAU GCGCCGAU UUCG ACAUA GAUG AAGU GACU UUA GAGU GC G UUGUCCCGC@LB@ |||||| :|:||:|| :||: |||:| |||| |||| :||| |:| ||:| || | |::||||:|@LB@ CCACUA UGUGGUUA GAGU UGUGU CUAC UUCA UUGA AGU CUUA CG C AGUAGGGUG@LB@3'-UUU...ACCGC AAA U CAG A GUCCG G A A C ACGUA...UAG-5'@LB@ | |@LB@ 204 125@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -51.0225 kcal/mol@LB@Unfolding Energy - mRNA 17.9985 kcal/mol@LB@Unfolding Energy - sRNA 20.5417 kcal/mol@LB@@LB@Position - mRNA 144 -- 222@LB@Position - sRNA 126 -- 203@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 126 -- 132@LB@ |
20 |
0.001715 |
0.2633 |
b3453 |
ugpB |
-12.22 |
0.100645 |
241 -- 257 |
18 -- 32 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________240______________258\n_____________|________________|\n5'-UUC...AAUUC_____U__________AAGAG...UGG-3'\n______________GCGCA_UCGGUACAAC\n______________:||||_:|:|:|||||\n______________UGCGU_GGUCGUGUUG\n3'-UUU...UUGGU_____U__________AAGCG...UAG-5'\n_____________|________________|\n_____________33_______________17\n |
180 -- 186 |
63 -- 69 |
-22.0099 kcal/mol |
5.49331 kcal/mol |
9.84719 kcal/mol |
240 258@LB@ | |@LB@5'-UUC...AAUUC U AAGAG...UGG-3'@LB@ GCGCA UCGGUACAAC@LB@ :|||| :|:|:|||||@LB@ UGCGU GGUCGUGUUG@LB@3'-UUU...UUGGU U AAGCG...UAG-5'@LB@ | |@LB@ 33 17@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -22.0099 kcal/mol@LB@Unfolding Energy - mRNA 5.49331 kcal/mol@LB@Unfolding Energy - sRNA 9.84719 kcal/mol@LB@@LB@Position - mRNA 241 -- 257@LB@Position - sRNA 18 -- 32@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 63 -- 69@LB@ |
200 |
0.02363 |
0.3833 |
b3068 |
mug |
-12.10 |
0.106144 |
279 -- 297 |
1 -- 19 |
G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase |
|
_____________278__________________298\n_____________|____________________|\n5'-UGG...GGACU___UU_______________CGG-3'\n______________GGU__UCCCUUUGCU_CAUC\n______________||:__:|||:|||||_||||\n______________CCG__GGGGGAACGA_GUAG\n3'-UUU...GUACC___U___________A____-5'\n_____________|___________________|\n_____________20__________________1\n |
287 -- 293 |
6 -- 12 |
-22.9494 kcal/mol |
3.41941 kcal/mol |
8.43224 kcal/mol |
278 298@LB@ | |@LB@5'-UGG...GGACU UU CGG-3'@LB@ GGU UCCCUUUGCU CAUC@LB@ ||: :|||:||||| ||||@LB@ CCG GGGGGAACGA GUAG@LB@3'-UUU...GUACC U A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -22.9494 kcal/mol@LB@Unfolding Energy - mRNA 3.41941 kcal/mol@LB@Unfolding Energy - sRNA 8.43224 kcal/mol@LB@@LB@Position - mRNA 279 -- 297@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 6 -- 12@LB@ |
131 |
0.01426 |
0.3575 |
b0048 |
folA |
-12.08 |
0.107221 |
135 -- 211 |
115 -- 187 |
dihydrofolate reductase |
|
_____________134_________212\n_____________|___________|\n5'-UCA...UUGUU___________GUAAU...GCA-3'\n______________UUUGUUUCAUU\n______________:|||:|||||:\n______________GAACGAAGUAG\n3'-UUU...UGGGG___________-5'\n_____________|__________|\n_____________188________115\n |
56 -- 62 |
1 -- 7 |
-10.5455 kcal/mol |
1.7602 kcal/mol |
1.03329 kcal/mol |
134 212@LB@ | |@LB@5'-UCA...UUGUU GUAAU...GCA-3'@LB@ UUUGUUUCAUU@LB@ :|||:|||||:@LB@ GAACGAAGUAG@LB@3'-UUU...UGGGG -5'@LB@ | |@LB@ 188 115@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -10.5455 kcal/mol@LB@Unfolding Energy - mRNA 1.7602 kcal/mol@LB@Unfolding Energy - sRNA 1.03329 kcal/mol@LB@@LB@Position - mRNA 135 -- 211@LB@Position - sRNA 115 -- 187@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 1 -- 7@LB@ |