140 |
0.01495 |
0.3575 |
b2415 |
ptsH |
-9.89 |
0.288161 |
112 -- 122 |
24 -- 34 |
phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) |
|
_____________111____________123\n_____________|______________|\n5'-UUG...CAAUA_____UA_______ACCGC...UUA-3'\n______________CAGGC__AAGUCGA\n______________|||||__|||||:|\n______________GUCCG__UUCAGUU\n3'-UUU...ACUAC______________GAAAG...UAG-5'\n_____________|______________|\n_____________35_____________23\n |
138 -- 144 |
150 -- 156 |
-14.4294 kcal/mol |
3.35524 kcal/mol |
6.54796 kcal/mol |
111 123@LB@ | |@LB@5'-UUG...CAAUA UA ACCGC...UUA-3'@LB@ CAGGC AAGUCGA@LB@ ||||| |||||:|@LB@ GUCCG UUCAGUU@LB@3'-UUU...ACUAC GAAAG...UAG-5'@LB@ | |@LB@ 35 23@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -14.4294 kcal/mol@LB@Unfolding Energy - mRNA 3.35524 kcal/mol@LB@Unfolding Energy - sRNA 6.54796 kcal/mol@LB@@LB@Position - mRNA 112 -- 122@LB@Position - sRNA 24 -- 34@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 150 -- 156@LB@ |
25 |
0.002009 |
0.2633 |
b0134 |
panB |
-9.88 |
0.290153 |
57 -- 67 |
176 -- 186 |
3-methyl-2-oxobutanoate hydroxymethyltransferase |
|
_____________56__________68\n_____________|___________|\n5'-CAG...AAAGC___________UCCAG...UUG-3'\n______________CACCAGUACUU\n______________|||||:||||:\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________187_________175\n |
61 -- 67 |
176 -- 182 |
-15.2136 kcal/mol |
0.973349 kcal/mol |
3.38772 kcal/mol |
56 68@LB@ | |@LB@5'-CAG...AAAGC UCCAG...UUG-3'@LB@ CACCAGUACUU@LB@ |||||:||||:@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 187 175@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -15.2136 kcal/mol@LB@Unfolding Energy - mRNA 0.973349 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 57 -- 67@LB@Position - sRNA 176 -- 186@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 176 -- 182@LB@ |
49 |
0.004667 |
0.3205 |
b1277 |
ribA |
-9.86 |
0.291903 |
241 -- 249 |
16 -- 24 |
GTP cyclohydrolase II |
|
_____________240________250\n_____________|__________|\n5'-CCA...AAUAC__________UUAUC...UCG-3'\n______________AGAACCAGCA\n______________|:||||||||\n______________UUUUGGUCGU\n_______3'-UUUU__________CCAUA...UAG-5'\n_____________|__________|\n_____________25_________15\n |
178 -- 184 |
214 -- 220 |
-13.9783 kcal/mol |
2.87719 kcal/mol |
5.75438 kcal/mol |
240 250@LB@ | |@LB@5'-CCA...AAUAC UUAUC...UCG-3'@LB@ AGAACCAGCA@LB@ |:||||||||@LB@ UUUUGGUCGU@LB@ 3'-UUUU CCAUA...UAG-5'@LB@ | |@LB@ 25 15@LB@@LB@@LB@Energy -9.86 kcal/mol@LB@Hybridization Energy -13.9783 kcal/mol@LB@Unfolding Energy - mRNA 2.87719 kcal/mol@LB@Unfolding Energy - sRNA 5.75438 kcal/mol@LB@@LB@Position - mRNA 241 -- 249@LB@Position - sRNA 16 -- 24@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 214 -- 220@LB@ |
81 |
0.008673 |
0.3575 |
b1683 |
sufB |
-9.84 |
0.294156 |
211 -- 257 |
124 -- 171 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________210_______________258\n_____________|_________________|\n5'-GUU...AAUCA________AAUU_____ACCCU...AGC-3'\n______________GAUAUUCA____UCACA\n______________:|||:|||____|||||\n______________UUAUGAGU____AGUGU\n3'-UUU...UGUGG________C________GUACU...UAG-5'\n_____________|_________________|\n_____________172_______________123\n |
127 -- 133 |
175 -- 181 |
-8.93573 kcal/mol |
1.46068 kcal/mol |
0.409577 kcal/mol |
210 258@LB@ | |@LB@5'-GUU...AAUCA AAUU ACCCU...AGC-3'@LB@ GAUAUUCA UCACA@LB@ :|||:||| |||||@LB@ UUAUGAGU AGUGU@LB@3'-UUU...UGUGG C GUACU...UAG-5'@LB@ | |@LB@ 172 123@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -8.93573 kcal/mol@LB@Unfolding Energy - mRNA 1.46068 kcal/mol@LB@Unfolding Energy - sRNA 0.409577 kcal/mol@LB@@LB@Position - mRNA 211 -- 257@LB@Position - sRNA 124 -- 171@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 175 -- 181@LB@ |
77 |
0.007981 |
0.3458 |
b1738 |
chbB |
-9.80 |
0.299184 |
58 -- 71 |
174 -- 187 |
N N'-diacetylchitobiose-specific enzyme IIB component of PTS |
|
_____________57_______________________________72\n_____________|________________________________|\n5'-AAU...UAUAA___CAAAGAA______U_______G__U____CGUAU...CGG-3'\n______________GGU_______AUACUA_UGCUCAG_UC_AUAC\n______________|||_______|:||:|_|:|||||_||_|:||\n______________CCA_______UGUGGU_AUGAGUC_AG_UGUG\n3'-UUU...ACCGC___CUAAAA_______U_______________UACUA...UAG-5'\n_____________|________________________________|\n_____________188______________________________173\n |
65 -- 71 |
174 -- 180 |
-20.4225 kcal/mol |
4.13376 kcal/mol |
5.03959 kcal/mol |
57 72@LB@ | |@LB@5'-AAU...UAUAA CAAAGAA U G U CGUAU...CGG-3'@LB@ GGU AUACUA UGCUCAG UC AUAC@LB@ ||| |:||:| |:||||| || |:||@LB@ CCA UGUGGU AUGAGUC AG UGUG@LB@3'-UUU...ACCGC CUAAAA U UACUA...UAG-5'@LB@ | |@LB@ 188 173@LB@@LB@@LB@Energy -9.80 kcal/mol@LB@Hybridization Energy -20.4225 kcal/mol@LB@Unfolding Energy - mRNA 4.13376 kcal/mol@LB@Unfolding Energy - sRNA 5.03959 kcal/mol@LB@@LB@Position - mRNA 58 -- 71@LB@Position - sRNA 174 -- 187@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 174 -- 180@LB@ |
59 |
0.005693 |
0.3247 |
b1959 |
yedA |
-9.74 |
0.306961 |
258 -- 278 |
1 -- 22 |
amino acid exporter for phenylalanine threonine |
|
_____________257_______279\n_____________|_________|\n5'-UCA...UGAUA_________CAGGU...GCU-3'\n______________CUUGCUUCA\n______________|||||||||\n______________GAACGAAGU\n3'-UUU...UGGGG_________AG-5'\n_____________|_________|\n_____________23________0\n |
90 -- 96 |
3 -- 9 |
-13.1616 kcal/mol |
3.16944 kcal/mol |
1.03153 kcal/mol |
257 279@LB@ | |@LB@5'-UCA...UGAUA CAGGU...GCU-3'@LB@ CUUGCUUCA@LB@ |||||||||@LB@ GAACGAAGU@LB@3'-UUU...UGGGG AG-5'@LB@ | |@LB@ 23 0@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -13.1616 kcal/mol@LB@Unfolding Energy - mRNA 3.16944 kcal/mol@LB@Unfolding Energy - sRNA 1.03153 kcal/mol@LB@@LB@Position - mRNA 258 -- 278@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 3 -- 9@LB@ |
163 |
0.01822 |
0.376 |
b1073 |
flgB |
-9.73 |
0.308533 |
172 -- 220 |
24 -- 70 |
flagellar component of cell-proximal portion of basal-body rod |
|
_____________171_______221\n_____________|_________|\n5'-UGA...AACAU_________CG-3'\n______________CGCCAAUGC\n______________|:|||||:|\n______________GUGGUUAUG\n3'-UUU...AAAAU_________AGUCA...UAG-5'\n_____________|_________|\n_____________71________23\n |
292 -- 298 |
178 -- 184 |
-11.5881 kcal/mol |
1.63005 kcal/mol |
3.31726 kcal/mol |
171 221@LB@ | |@LB@5'-UGA...AACAU CG-3'@LB@ CGCCAAUGC@LB@ |:|||||:|@LB@ GUGGUUAUG@LB@3'-UUU...AAAAU AGUCA...UAG-5'@LB@ | |@LB@ 71 23@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -11.5881 kcal/mol@LB@Unfolding Energy - mRNA 1.63005 kcal/mol@LB@Unfolding Energy - sRNA 3.31726 kcal/mol@LB@@LB@Position - mRNA 172 -- 220@LB@Position - sRNA 24 -- 70@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 178 -- 184@LB@ |
115 |
0.01273 |
0.3575 |
b3440 |
yhhX |
-9.67 |
0.316530 |
203 -- 215 |
123 -- 136 |
putative oxidoreductase |
|
_____________202______________________________216\n_____________|________________________________|\n5'-GAC...CGUAU_______AC____AG____A__U____U____CGCAUA-3'\n______________GUACUUA__CGCA___GAU_GC_GGCA_GUCG\n______________:||||:|__|:||___|||_||_||||_|||:\n______________UAUGAGU__GUGU___CUA_CG_CCGU_CAGU\n3'-UUU...GUGGU_______CA____GUA______U____U____UGAAA...UAG-5'\n_____________|________________________________|\n_____________137______________________________122\n |
264 -- 270 |
175 -- 181 |
-25.3028 kcal/mol |
7.53441 kcal/mol |
8.15082 kcal/mol |
202 216@LB@ | |@LB@5'-GAC...CGUAU AC AG A U U CGCAUA-3'@LB@ GUACUUA CGCA GAU GC GGCA GUCG@LB@ :||||:| |:|| ||| || |||| |||:@LB@ UAUGAGU GUGU CUA CG CCGU CAGU@LB@3'-UUU...GUGGU CA GUA U U UGAAA...UAG-5'@LB@ | |@LB@ 137 122@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -25.3028 kcal/mol@LB@Unfolding Energy - mRNA 7.53441 kcal/mol@LB@Unfolding Energy - sRNA 8.15082 kcal/mol@LB@@LB@Position - mRNA 203 -- 215@LB@Position - sRNA 123 -- 136@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 175 -- 181@LB@ |
194 |
0.02283 |
0.3833 |
b3823 |
rhtC |
-9.67 |
0.316154 |
216 -- 300 |
113 -- 178 |
threonine efflux pump |
|
_____________215___________________301\n_____________|_____________________|\n5'-AGA...UAUUU____CC_______________CAUUG...GUU-3'\n______________CUCA__GUCGC_CAUGGUGCA\n______________||||__|||:|_||||:||||\n______________GAGU__CAGUG_GUACUACGU\n3'-UUU...GUUAU___________U_________CCGUU...UAG-5'\n_____________|_____________________|\n_____________179___________________112\n |
228 -- 234 |
161 -- 167 |
-23.3741 kcal/mol |
7.13181 kcal/mol |
4.79874 kcal/mol |
215 301@LB@ | |@LB@5'-AGA...UAUUU CC CAUUG...GUU-3'@LB@ CUCA GUCGC CAUGGUGCA@LB@ |||| |||:| ||||:||||@LB@ GAGU CAGUG GUACUACGU@LB@3'-UUU...GUUAU U CCGUU...UAG-5'@LB@ | |@LB@ 179 112@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -23.3741 kcal/mol@LB@Unfolding Energy - mRNA 7.13181 kcal/mol@LB@Unfolding Energy - sRNA 4.79874 kcal/mol@LB@@LB@Position - mRNA 216 -- 300@LB@Position - sRNA 113 -- 178@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 161 -- 167@LB@ |
181 |
0.0209 |
0.3833 |
b2233 |
yfaL |
-9.66 |
0.317681 |
275 -- 285 |
50 -- 60 |
adhesin |
|
_____________274______________286\n_____________|________________|\n5'-UAU...UCUCU___AA__G________CGGUC...CAU-3'\n______________GCU__CG_UGUCGCGG\n______________:||__||_||||||||\n______________UGA__GC_ACAGCGCC\n3'-UUU...CGUGU___A___G________AUUUU...UAG-5'\n_____________|________________|\n_____________61_______________49\n |
279 -- 285 |
50 -- 56 |
-20.2435 kcal/mol |
4.65708 kcal/mol |
6.1451 kcal/mol |
274 286@LB@ | |@LB@5'-UAU...UCUCU AA G CGGUC...CAU-3'@LB@ GCU CG UGUCGCGG@LB@ :|| || ||||||||@LB@ UGA GC ACAGCGCC@LB@3'-UUU...CGUGU A G AUUUU...UAG-5'@LB@ | |@LB@ 61 49@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -20.2435 kcal/mol@LB@Unfolding Energy - mRNA 4.65708 kcal/mol@LB@Unfolding Energy - sRNA 6.1451 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 50 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |