126 |
0.01383 |
0.3575 |
b1843 |
yobB |
-8.48 |
0.503741 |
101 -- 118 |
168 -- 185 |
C-N hydrolase family protein |
|
_____________100____________119\n_____________|______________|\n5'-CCU...AACUU____AG________UUUCU...CCA-3'\n______________AUAC__AGUUACAC\n______________||||__|||:||||\n______________UAUG__UCAGUGUG\n3'-UUU...GUGGU____AG________UACUA...UAG-5'\n_____________|______________|\n_____________186____________167\n |
112 -- 118 |
168 -- 174 |
-13.9608 kcal/mol |
3.09724 kcal/mol |
0.286881 kcal/mol |
100 119@LB@ | |@LB@5'-CCU...AACUU AG UUUCU...CCA-3'@LB@ AUAC AGUUACAC@LB@ |||| |||:||||@LB@ UAUG UCAGUGUG@LB@3'-UUU...GUGGU AG UACUA...UAG-5'@LB@ | |@LB@ 186 167@LB@@LB@@LB@Energy -8.48 kcal/mol@LB@Hybridization Energy -13.9608 kcal/mol@LB@Unfolding Energy - mRNA 3.09724 kcal/mol@LB@Unfolding Energy - sRNA 0.286881 kcal/mol@LB@@LB@Position - mRNA 101 -- 118@LB@Position - sRNA 168 -- 185@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 168 -- 174@LB@ |
82 |
0.008839 |
0.3575 |
b3680 |
yidL |
-8.33 |
0.532337 |
91 -- 113 |
142 -- 164 |
AraC family putative transcriptional regulator |
|
_____________90________________114\n_____________|_________________|\n5'-AAC...UGCGU________GCAG_____UUCUU...UGA-3'\n______________CGGGUCAG____UCAGA\n______________|::||||:____|||||\n______________GUUCAGUU____AGUCU\n3'-UUU...CGUCC________GAA______UAACG...UAG-5'\n_____________|_________________|\n_____________165_______________141\n |
97 -- 103 |
151 -- 157 |
-14.3717 kcal/mol |
4.36777 kcal/mol |
4.37859 kcal/mol |
90 114@LB@ | |@LB@5'-AAC...UGCGU GCAG UUCUU...UGA-3'@LB@ CGGGUCAG UCAGA@LB@ |::||||: |||||@LB@ GUUCAGUU AGUCU@LB@3'-UUU...CGUCC GAA UAACG...UAG-5'@LB@ | |@LB@ 165 141@LB@@LB@@LB@Energy -8.33 kcal/mol@LB@Hybridization Energy -14.3717 kcal/mol@LB@Unfolding Energy - mRNA 4.36777 kcal/mol@LB@Unfolding Energy - sRNA 4.37859 kcal/mol@LB@@LB@Position - mRNA 91 -- 113@LB@Position - sRNA 142 -- 164@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 151 -- 157@LB@ |
160 |
0.01787 |
0.3749 |
b3935 |
priA |
-8.27 |
0.542824 |
222 -- 250 |
110 -- 140 |
Primosome factor n' (replication factor Y) |
|
_____________221_________________________251\n_____________|___________________________|\n5'-GAA...UAACC______AU___A_____G_________UAUGC...GCG-3'\n______________CACCGA__UUC_AGUCA_G_AUGAUGC\n______________||||:|__:||_|||||_:_|||||||\n______________GUGGUU__GAG_UCAGU_U_UACUACG\n3'-UUU...AAAAU______AU_________G_G_______UCCGU...UAG-5'\n_____________|___________________________|\n_____________141_________________________109\n |
193 -- 199 |
161 -- 167 |
-24.457 kcal/mol |
4.47787 kcal/mol |
7.72013 kcal/mol |
221 251@LB@ | |@LB@5'-GAA...UAACC AU A G UAUGC...GCG-3'@LB@ CACCGA UUC AGUCA G AUGAUGC@LB@ ||||:| :|| ||||| : |||||||@LB@ GUGGUU GAG UCAGU U UACUACG@LB@3'-UUU...AAAAU AU G G UCCGU...UAG-5'@LB@ | |@LB@ 141 109@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -24.457 kcal/mol@LB@Unfolding Energy - mRNA 4.47787 kcal/mol@LB@Unfolding Energy - sRNA 7.72013 kcal/mol@LB@@LB@Position - mRNA 222 -- 250@LB@Position - sRNA 110 -- 140@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 161 -- 167@LB@ |
109 |
0.01201 |
0.3575 |
b1096 |
pabC |
-8.08 |
0.578936 |
115 -- 139 |
144 -- 163 |
4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex |
|
_____________114____________140\n_____________|______________|\n5'-GUU...GUGUA_______CG_____GGUGG...ACG-3'\n______________ACUCCUU__GCUUC\n______________||:||:|__|||||\n______________UGGGGGA__CGAAG\n3'-UUU...CCCCG_______A______UAG-5'\n_____________|______________|\n_____________164____________143\n |
29 -- 35 |
10 -- 16 |
-15.037 kcal/mol |
0.971533 kcal/mol |
6.96912 kcal/mol |
114 140@LB@ | |@LB@5'-GUU...GUGUA CG GGUGG...ACG-3'@LB@ ACUCCUU GCUUC@LB@ ||:||:| |||||@LB@ UGGGGGA CGAAG@LB@3'-UUU...CCCCG A UAG-5'@LB@ | |@LB@ 164 143@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -15.037 kcal/mol@LB@Unfolding Energy - mRNA 0.971533 kcal/mol@LB@Unfolding Energy - sRNA 6.96912 kcal/mol@LB@@LB@Position - mRNA 115 -- 139@LB@Position - sRNA 144 -- 163@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 10 -- 16@LB@ |
199 |
0.02363 |
0.3833 |
b4141 |
yjeH |
-8.04 |
0.585705 |
57 -- 67 |
64 -- 74 |
putative transporter |
|
_____________56_____________68\n_____________|______________|\n5'-CAG...AAAUC___G_______C__AAAUU...CUG-3'\n______________UAC_CAGUUGC_CA\n______________|||_||||::|_||\n______________AUG_GUCAGUG_GU\n3'-UUU...UGGUU___A_______U__ACUAC...UAG-5'\n_____________|______________|\n_____________75_____________63\n |
163 -- 169 |
170 -- 176 |
-11.2481 kcal/mol |
2.09942 kcal/mol |
0.433965 kcal/mol |
56 68@LB@ | |@LB@5'-CAG...AAAUC G C AAAUU...CUG-3'@LB@ UAC CAGUUGC CA@LB@ ||| ||||::| ||@LB@ AUG GUCAGUG GU@LB@3'-UUU...UGGUU A U ACUAC...UAG-5'@LB@ | |@LB@ 75 63@LB@@LB@@LB@Energy -8.04 kcal/mol@LB@Hybridization Energy -11.2481 kcal/mol@LB@Unfolding Energy - mRNA 2.09942 kcal/mol@LB@Unfolding Energy - sRNA 0.433965 kcal/mol@LB@@LB@Position - mRNA 57 -- 67@LB@Position - sRNA 64 -- 74@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 170 -- 176@LB@ |
174 |
0.01972 |
0.3812 |
b0478 |
ybaL |
-7.90 |
0.612018 |
5 -- 14 |
166 -- 176 |
inner membrane putative NAD(P)-binding transporter |
|
_____________4___________15\n_____________|___________|\n_______5'-UUUA___________AAGCC...UGG-3'\n______________CAGUCGC_CAU\n______________|||||:|_|||\n______________GUCAGUG_GUA\n3'-UUU...UAUGA_______U___CUACG...UAG-5'\n_____________|___________|\n_____________177_________165\n |
5 -- 11 |
170 -- 176 |
-11.743 kcal/mol |
0.493889 kcal/mol |
0.598087 kcal/mol |
4 15@LB@ | |@LB@ 5'-UUUA AAGCC...UGG-3'@LB@ CAGUCGC CAU@LB@ |||||:| |||@LB@ GUCAGUG GUA@LB@3'-UUU...UAUGA U CUACG...UAG-5'@LB@ | |@LB@ 177 165@LB@@LB@@LB@Energy -7.90 kcal/mol@LB@Hybridization Energy -11.743 kcal/mol@LB@Unfolding Energy - mRNA 0.493889 kcal/mol@LB@Unfolding Energy - sRNA 0.598087 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 166 -- 176@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 170 -- 176@LB@ |
195 |
0.02319 |
0.3833 |
b1233 |
ychJ |
-7.86 |
0.620262 |
61 -- 80 |
1 -- 18 |
UPF0225 family protein |
|
_____________60____________________________________81\n_____________|_____________________________________|\n5'-CUU...GCUAC_______________A___CUACU_____________ACGCC...UCA-3'\n______________UGCUCGGUUA_ACAU_GUG_____CAGGC_GGUUAAU\n______________|:|||:||:|_||||_:||_____|||||_:||:||:\n______________AUGAGUCAGU_UGUA_UAC_____GUCCG_UCAGUUG\n3'-UUU...UGGUU__________G____C_____________U_______AAAGU...UAG-5'\n_____________|_____________________________________|\n_____________19____________________________________0\n |
139 -- 145 |
171 -- 177 |
-29.0991 kcal/mol |
9.80481 kcal/mol |
8.18679 kcal/mol |
60 81@LB@ | |@LB@5'-CUU...GCUAC A CUACU ACGCC...UCA-3'@LB@ UGCUCGGUUA ACAU GUG CAGGC GGUUAAU@LB@ |:|||:||:| |||| :|| ||||| :||:||:@LB@ AUGAGUCAGU UGUA UAC GUCCG UCAGUUG@LB@3'-UUU...UGGUU G C U AAAGU...UAG-5'@LB@ | |@LB@ 19 0@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -29.0991 kcal/mol@LB@Unfolding Energy - mRNA 9.80481 kcal/mol@LB@Unfolding Energy - sRNA 8.18679 kcal/mol@LB@@LB@Position - mRNA 61 -- 80@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 171 -- 177@LB@ |
156 |
0.01739 |
0.3749 |
b4332 |
yjiJ |
-7.83 |
0.625728 |
95 -- 115 |
80 -- 101 |
DUF1228 family putative inner membrane MFS superfamily transporter |
|
_____________94_______116\n_____________|________|\n5'-AAC...GGUUU________ACAUC...UUU-3'\n______________GUCGCAUA\n______________|||:||:|\n______________CAGUGUGU\n3'-UUU...UGAGU________ACUAC...UAG-5'\n_____________|________|\n_____________102______79\n |
23 -- 29 |
167 -- 173 |
-9.78459 kcal/mol |
1.62979 kcal/mol |
0.409692 kcal/mol |
94 116@LB@ | |@LB@5'-AAC...GGUUU ACAUC...UUU-3'@LB@ GUCGCAUA@LB@ |||:||:|@LB@ CAGUGUGU@LB@3'-UUU...UGAGU ACUAC...UAG-5'@LB@ | |@LB@ 102 79@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -9.78459 kcal/mol@LB@Unfolding Energy - mRNA 1.62979 kcal/mol@LB@Unfolding Energy - sRNA 0.409692 kcal/mol@LB@@LB@Position - mRNA 95 -- 115@LB@Position - sRNA 80 -- 101@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 167 -- 173@LB@ |
38 |
0.003319 |
0.2912 |
b3073 |
patA |
-6.81 |
0.814367 |
213 -- 222 |
107 -- 116 |
putrescine:2-oxoglutaric acid aminotransferase PLP-dependent |
|
_____________212________223\n_____________|__________|\n5'-CAU...GGUUA__________CAUCG...CAC-3'\n______________CCUUCGAGCG\n______________|||||:|||:\n______________GGAAGUUCGU\n3'-UUU...AGUCA__________ACCAA...UAG-5'\n_____________|__________|\n_____________117________106\n |
216 -- 222 |
107 -- 113 |
-14.0153 kcal/mol |
3.04157 kcal/mol |
5.58351 kcal/mol |
212 223@LB@ | |@LB@5'-CAU...GGUUA CAUCG...CAC-3'@LB@ CCUUCGAGCG@LB@ |||||:|||:@LB@ GGAAGUUCGU@LB@3'-UUU...AGUCA ACCAA...UAG-5'@LB@ | |@LB@ 117 106@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -14.0153 kcal/mol@LB@Unfolding Energy - mRNA 3.04157 kcal/mol@LB@Unfolding Energy - sRNA 5.58351 kcal/mol@LB@@LB@Position - mRNA 213 -- 222@LB@Position - sRNA 107 -- 116@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 107 -- 113@LB@ |
171 |
0.01954 |
0.3812 |
b3687 |
ibpA |
-6.40 |
0.875621 |
11 -- 20 |
10 -- 18 |
heat shock chaperone |
|
_____________10____________21\n_____________|_____________|\n5'-AAC...GCCCC_______U_____AUAGA...GCU-3'\n______________CUCAGUC_AUGCA\n______________|||||||_|::||\n______________GAGUCAG_UGUGU\n3'-UUU...GUUAU_____________ACUAC...UAG-5'\n_____________|_____________|\n_____________19____________9\n |
19 -- 25 |
172 -- 178 |
-14.2159 kcal/mol |
5.36362 kcal/mol |
0.433674 kcal/mol |
10 21@LB@ | |@LB@5'-AAC...GCCCC U AUAGA...GCU-3'@LB@ CUCAGUC AUGCA@LB@ ||||||| |::||@LB@ GAGUCAG UGUGU@LB@3'-UUU...GUUAU ACUAC...UAG-5'@LB@ | |@LB@ 19 9@LB@@LB@@LB@Energy -6.40 kcal/mol@LB@Hybridization Energy -14.2159 kcal/mol@LB@Unfolding Energy - mRNA 5.36362 kcal/mol@LB@Unfolding Energy - sRNA 0.433674 kcal/mol@LB@@LB@Position - mRNA 11 -- 20@LB@Position - sRNA 10 -- 18@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 172 -- 178@LB@ |