12 |
0.0007005 |
0.1842 |
b1101 |
ptsG |
-16.86 |
0.011310 |
173 -- 192 |
168 -- 187 |
fused glucose-specific PTS enzymes: IIB component/IIC component |
|
_____________172__________________193\n_____________|____________________|\n5'-CAU...AAAAA_____C________GA____UCUCA...GUU-3'\n______________GCACC_AUACUCAG__GCAC\n______________:||||_||||||||__:|||\n______________UGUGG_UAUGAGUC__UGUG\n3'-UUU...UAAAA_____U________AG____UACUA...UAG-5'\n_____________|____________________|\n_____________188__________________167\n |
180 -- 186 |
174 -- 180 |
-27.3381 kcal/mol |
3.90127 kcal/mol |
4.88067 kcal/mol |
172 193@LB@ | |@LB@5'-CAU...AAAAA C GA UCUCA...GUU-3'@LB@ GCACC AUACUCAG GCAC@LB@ :|||| |||||||| :|||@LB@ UGUGG UAUGAGUC UGUG@LB@3'-UUU...UAAAA U AG UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -16.86 kcal/mol@LB@Hybridization Energy -27.3381 kcal/mol@LB@Unfolding Energy - mRNA 3.90127 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 173 -- 192@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 174 -- 180@LB@ |
29 |
0.002294 |
0.2633 |
b0624 |
flc |
-16.49 |
0.013425 |
233 -- 293 |
118 -- 176 |
fluoride efflux channel dual topology membrane protein |
|
_____________232_____________________294\n_____________|_______________________|\n5'-AAA...CGGCG_______UA______C_______AAUCA...UUC-3'\n______________UUACACU_____UCA_UCAUACA\n______________||||||:_____|||_|||:|||\n______________AAUGUGG_____AGU_AGUGUGU\n3'-UUU...ACUAA_______UUAUG___C_______ACUAC...UAG-5'\n_____________|_______________________|\n_____________177_____________________117\n |
172 -- 178 |
167 -- 173 |
-16.8792 kcal/mol |
2.93634 kcal/mol |
5.08824 kcal/mol |
232 294@LB@ | |@LB@5'-AAA...CGGCG UA C AAUCA...UUC-3'@LB@ UUACACU UCA UCAUACA@LB@ ||||||: ||| |||:|||@LB@ AAUGUGG AGU AGUGUGU@LB@3'-UUU...ACUAA UUAUG C ACUAC...UAG-5'@LB@ | |@LB@ 177 117@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -16.8792 kcal/mol@LB@Unfolding Energy - mRNA 2.93634 kcal/mol@LB@Unfolding Energy - sRNA 5.08824 kcal/mol@LB@@LB@Position - mRNA 233 -- 293@LB@Position - sRNA 118 -- 176@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 167 -- 173@LB@ |
74 |
0.007724 |
0.3458 |
b1261 |
trpB |
-16.40 |
0.014006 |
36 -- 47 |
195 -- 206 |
tryptophan synthase beta subunit |
|
_____________35___________48\n_____________|____________|\n5'-UGG...AACGU____________GGGCU...UCA-3'\n______________UCUGCUGGCGGG\n______________||||||||||||\n______________AGACGACCGCCC\n3'-UUU...AUAUU____________ACUAA...UAG-5'\n_____________|____________|\n_____________207__________194\n |
41 -- 47 |
195 -- 201 |
-26.9412 kcal/mol |
6.0368 kcal/mol |
9.05854 kcal/mol |
35 48@LB@ | |@LB@5'-UGG...AACGU GGGCU...UCA-3'@LB@ UCUGCUGGCGGG@LB@ ||||||||||||@LB@ AGACGACCGCCC@LB@3'-UUU...AUAUU ACUAA...UAG-5'@LB@ | |@LB@ 207 194@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -26.9412 kcal/mol@LB@Unfolding Energy - mRNA 6.0368 kcal/mol@LB@Unfolding Energy - sRNA 9.05854 kcal/mol@LB@@LB@Position - mRNA 36 -- 47@LB@Position - sRNA 195 -- 206@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 195 -- 201@LB@ |
16 |
0.0008966 |
0.1886 |
b0807 |
rlmF |
-16.29 |
0.014793 |
117 -- 160 |
51 -- 97 |
23S rRNA m(6)A1618 methyltransferase SAM-dependent |
|
_____________116_____________________________________________161\n_____________|_______________________________________________|\n5'-AUU...UUAAG___U_____AA______A_______________U__A_C________UUAUG...UCC-3'\n______________GUU_UGGGG____UGAU_AACGCAGCCAG_AUA_UU_C_CUGUCGCG\n______________|||_||||:____|:|:_||||||:||||_|:|_:|_|_||||||||\n______________CAA_ACCCU____AUUG_UUGCGUUGGUC_UGU_GA_G_GACAGCGC\n3'-UUU...AUUAG___C_____GCGA____G___________G___U__A_C________CAUUU...UAG-5'\n_____________|_______________________________________________|\n_____________98______________________________________________50\n |
154 -- 160 |
51 -- 57 |
-44.7843 kcal/mol |
10.0752 kcal/mol |
25.3667 kcal/mol |
116 161@LB@ | |@LB@5'-AUU...UUAAG U AA A U A C UUAUG...UCC-3'@LB@ GUU UGGGG UGAU AACGCAGCCAG AUA UU C CUGUCGCG@LB@ ||| ||||: |:|: ||||||:|||| |:| :| | ||||||||@LB@ CAA ACCCU AUUG UUGCGUUGGUC UGU GA G GACAGCGC@LB@3'-UUU...AUUAG C GCGA G G U A C CAUUU...UAG-5'@LB@ | |@LB@ 98 50@LB@@LB@@LB@Energy -16.29 kcal/mol@LB@Hybridization Energy -44.7843 kcal/mol@LB@Unfolding Energy - mRNA 10.0752 kcal/mol@LB@Unfolding Energy - sRNA 25.3667 kcal/mol@LB@@LB@Position - mRNA 117 -- 160@LB@Position - sRNA 51 -- 97@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 51 -- 57@LB@ |
119 |
0.013 |
0.3575 |
b0801 |
ybiC |
-16.26 |
0.015008 |
158 -- 253 |
108 -- 187 |
putative dehydrogenase |
|
_____________157____________________________________________________________________________________________254\n_____________|______________________________________________________________________________________________|\n5'-GCU...AUAAA_____AA__AA______ACAUAAA_____________CAU_____A__________G_UUUGAUGCUCAGAC_____________UA_______UGUAU...UUG-3'\n______________AAUAC__CA__CACAUA_______CAGG__AGUUAAC____GGAA__GUGGUCAUC_C______________GCUGCA_CAGUUU__UUCAGGC\n______________|||||__||__||||:|_______||||__|||:|||____:|||__|:|||||||_|______________:|||||_||||::__||||:||\n______________UUAUG__GU__GUGUGU_______GUCC__UCAGUUG____UCUU__CGCCAGUAG_G______________UGACGU_GUCAGG__AAGUUCG\n3'-UUU...UGUGG_____A___CA______ACUAC______GU_______AAAG____AA_________G_____________________A_______________UACCA...UAG-5'\n_____________|______________________________________________________________________________________________|\n_____________188____________________________________________________________________________________________107\n |
247 -- 253 |
108 -- 114 |
-56.5044 kcal/mol |
18.8914 kcal/mol |
26.5178 kcal/mol |
157 254@LB@ | |@LB@5'-GCU...AUAAA AA AA ACAUAAA CAU A G UUUGAUGCUCAGAC UA UGUAU...UUG-3'@LB@ AAUAC CA CACAUA CAGG AGUUAAC GGAA GUGGUCAUC C GCUGCA CAGUUU UUCAGGC@LB@ ||||| || ||||:| |||| |||:||| :||| |:||||||| | :||||| ||||:: ||||:||@LB@ UUAUG GU GUGUGU GUCC UCAGUUG UCUU CGCCAGUAG G UGACGU GUCAGG AAGUUCG@LB@3'-UUU...UGUGG A CA ACUAC GU AAAG AA G A UACCA...UAG-5'@LB@ | |@LB@ 188 107@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -56.5044 kcal/mol@LB@Unfolding Energy - mRNA 18.8914 kcal/mol@LB@Unfolding Energy - sRNA 26.5178 kcal/mol@LB@@LB@Position - mRNA 158 -- 253@LB@Position - sRNA 108 -- 187@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 108 -- 114@LB@ |
26 |
0.002141 |
0.2633 |
b0183 |
rnhB |
-16.17 |
0.015603 |
251 -- 292 |
123 -- 175 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
______________251_______________________________________________________293\n______________|_________________________________________________________|\n___________5'-____________________________AG_G_______AAGAAUUAU__________AGUGU...UCC-3'\n______________AAUCUGCUGGCGGG___________CAG__A_UUAGUCA_________UGCAGG_AAG\n______________||||||||||||||___________||:__|_|:|||||_________||||||_|||\n______________UUAGACGACCGCCC___________GUU__U_AGUCAGU_________ACGUCC_UUC\n3'-UUU...CCAUA______________ACUAAAAUGUG___A__G_______GUGUACU________G___AGUUG...UAG-5'\n_____________|__________________________________________________________|\n_____________176________________________________________________________122\n |
22 -- 28 |
171 -- 177 |
-46.3072 kcal/mol |
12.4456 kcal/mol |
20.994 kcal/mol |
251 293@LB@ | |@LB@ 5'- AG G AAGAAUUAU AGUGU...UCC-3'@LB@ AAUCUGCUGGCGGG CAG A UUAGUCA UGCAGG AAG@LB@ |||||||||||||| ||: | |:||||| |||||| |||@LB@ UUAGACGACCGCCC GUU U AGUCAGU ACGUCC UUC@LB@3'-UUU...CCAUA ACUAAAAUGUG A G GUGUACU G AGUUG...UAG-5'@LB@ | |@LB@ 176 122@LB@@LB@@LB@Energy -16.17 kcal/mol@LB@Hybridization Energy -46.3072 kcal/mol@LB@Unfolding Energy - mRNA 12.4456 kcal/mol@LB@Unfolding Energy - sRNA 20.994 kcal/mol@LB@@LB@Position - mRNA 251 -- 292@LB@Position - sRNA 123 -- 175@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 171 -- 177@LB@ |
91 |
0.01018 |
0.3575 |
b1660 |
ydhC |
-16.12 |
0.016020 |
223 -- 255 |
172 -- 209 |
putative arabinose efflux transporter |
|
_____________222_____________________________________256\n_____________|_______________________________________|\n5'-GAA...AUUUU______G_________________A______________UUCUG...AGG-3'\n______________UAGUCU_GCUGGCGGGU____UUG_GC__GUACUCGGUU\n______________||:|||_||||||||||____||:_:|__:|||||:||:\n______________AUUAGA_CGACCGCCCA____AAU_UG__UAUGAGUCAG\n3'-UUU...UCCAU_________________CUAA___G__GU__________UGUGU...UAG-5'\n_____________|_______________________________________|\n_____________210_____________________________________171\n |
249 -- 255 |
172 -- 178 |
-38.0361 kcal/mol |
10.2504 kcal/mol |
15.0669 kcal/mol |
222 256@LB@ | |@LB@5'-GAA...AUUUU G A UUCUG...AGG-3'@LB@ UAGUCU GCUGGCGGGU UUG GC GUACUCGGUU@LB@ ||:||| |||||||||| ||: :| :|||||:||:@LB@ AUUAGA CGACCGCCCA AAU UG UAUGAGUCAG@LB@3'-UUU...UCCAU CUAA G GU UGUGU...UAG-5'@LB@ | |@LB@ 210 171@LB@@LB@@LB@Energy -16.12 kcal/mol@LB@Hybridization Energy -38.0361 kcal/mol@LB@Unfolding Energy - mRNA 10.2504 kcal/mol@LB@Unfolding Energy - sRNA 15.0669 kcal/mol@LB@@LB@Position - mRNA 223 -- 255@LB@Position - sRNA 172 -- 209@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 172 -- 178@LB@ |
14 |
0.00083 |
0.1886 |
b2721 |
hycE |
-15.91 |
0.017607 |
169 -- 185 |
190 -- 205 |
hydrogenase 3 large subunit |
|
_____________168_______________186\n_____________|_________________|\n5'-UUC...UCUCC__________C______AAAGA...UGA-3'\n______________UUGCUGGCGG_GUGAUU\n______________:|||||||||_||||||\n______________GACGACCGCC_CACUAA\n3'-UUU...UAUUA_________________AAUGU...UAG-5'\n_____________|_________________|\n_____________206_______________189\n |
172 -- 178 |
196 -- 202 |
-26.9802 kcal/mol |
6.4269 kcal/mol |
9.06848 kcal/mol |
168 186@LB@ | |@LB@5'-UUC...UCUCC C AAAGA...UGA-3'@LB@ UUGCUGGCGG GUGAUU@LB@ :||||||||| ||||||@LB@ GACGACCGCC CACUAA@LB@3'-UUU...UAUUA AAUGU...UAG-5'@LB@ | |@LB@ 206 189@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -26.9802 kcal/mol@LB@Unfolding Energy - mRNA 6.4269 kcal/mol@LB@Unfolding Energy - sRNA 9.06848 kcal/mol@LB@@LB@Position - mRNA 169 -- 185@LB@Position - sRNA 190 -- 205@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 196 -- 202@LB@ |
47 |
0.004619 |
0.3205 |
b4142 |
groS |
-15.85 |
0.018169 |
259 -- 271 |
196 -- 208 |
Cpn10 chaperonin GroES small subunit of GroESL |
|
_____________258_______________________________272\n_____________|_________________________________|\n5'-UGA...AACUA_____________CAUCGUUCUG__________UGCAG...CUA-3'\n______________AAUCUGCUGGCGG__________ACCG__GCUC\n______________|||||||||||||__________|||:__:|||\n______________UUAGACGACCGCC__________UGGU__UGAG\n3'-UUU...CCAUA_____________CACUAAAAUG____UA____UCAGU...UAG-5'\n_____________|_________________________________|\n_____________209_______________________________195\n |
265 -- 271 |
196 -- 202 |
-33.1058 kcal/mol |
10.148 kcal/mol |
14.8106 kcal/mol |
258 272@LB@ | |@LB@5'-UGA...AACUA CAUCGUUCUG UGCAG...CUA-3'@LB@ AAUCUGCUGGCGG ACCG GCUC@LB@ ||||||||||||| |||: :|||@LB@ UUAGACGACCGCC UGGU UGAG@LB@3'-UUU...CCAUA CACUAAAAUG UA UCAGU...UAG-5'@LB@ | |@LB@ 209 195@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -33.1058 kcal/mol@LB@Unfolding Energy - mRNA 10.148 kcal/mol@LB@Unfolding Energy - sRNA 14.8106 kcal/mol@LB@@LB@Position - mRNA 259 -- 271@LB@Position - sRNA 196 -- 208@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 196 -- 202@LB@ |
135 |
0.01453 |
0.3575 |
b2934 |
cmtB |
-15.85 |
0.018111 |
229 -- 275 |
145 -- 186 |
putative mannitol-specific enzyme IIA component of PTS |
|
_____________228___________________276\n_____________|_____________________|\n5'-AUA...AGAAU_____________________UCAGC...UGG-3'\n______________CAUCAAU_CUCAGUUAUACAU\n______________||:||||_||||||:|:||||\n______________GUGGUUA_GAGUCAGUGUGUA\n3'-UUU...AAAAU_______U_____________CUACG...UAG-5'\n_____________|_____________________|\n_____________187___________________144\n |
242 -- 248 |
166 -- 172 |
-24.8158 kcal/mol |
1.5387 kcal/mol |
5.06797 kcal/mol |
228 276@LB@ | |@LB@5'-AUA...AGAAU UCAGC...UGG-3'@LB@ CAUCAAU CUCAGUUAUACAU@LB@ ||:|||| ||||||:|:||||@LB@ GUGGUUA GAGUCAGUGUGUA@LB@3'-UUU...AAAAU U CUACG...UAG-5'@LB@ | |@LB@ 187 144@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -24.8158 kcal/mol@LB@Unfolding Energy - mRNA 1.5387 kcal/mol@LB@Unfolding Energy - sRNA 5.06797 kcal/mol@LB@@LB@Position - mRNA 229 -- 275@LB@Position - sRNA 145 -- 186@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 166 -- 172@LB@ |