196 |
0.0235 |
0.3833 |
b3105 |
yhaJ |
-11.17 |
0.163135 |
292 -- 299 |
86 -- 93 |
LysR family putative transcriptional regulator |
|
_____________291______300\n_____________|________|\n5'-CGG...UGAGC________G-3'\n______________UGGGACGC\n______________||||||||\n______________ACCCUGCG\n3'-UUU...GCAAC________AAUUG...UAG-5'\n_____________|________|\n_____________94_______85\n |
293 -- 299 |
86 -- 92 |
-14.7688 kcal/mol |
2.10679 kcal/mol |
4.21973 kcal/mol |
291 300@LB@ | |@LB@5'-CGG...UGAGC G-3'@LB@ UGGGACGC@LB@ ||||||||@LB@ ACCCUGCG@LB@3'-UUU...GCAAC AAUUG...UAG-5'@LB@ | |@LB@ 94 85@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -14.7688 kcal/mol@LB@Unfolding Energy - mRNA 2.10679 kcal/mol@LB@Unfolding Energy - sRNA 4.21973 kcal/mol@LB@@LB@Position - mRNA 292 -- 299@LB@Position - sRNA 86 -- 93@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 86 -- 92@LB@ |
165 |
0.01884 |
0.3812 |
b3291 |
mscL |
-11.12 |
0.167422 |
252 -- 267 |
193 -- 208 |
mechanosensitive channel protein high conductance |
|
_____________251_____268\n_____________|_______|\n5'-UGU...UGUCG_______AGGGA...UCU-3'\n______________GCUUCAU\n______________|||||||\n______________CGAAGUA\n3'-UUU...GGGAA_______G-5'\n_____________|_______|\n_____________209_____192\n |
182 -- 188 |
2 -- 8 |
-9.41561 kcal/mol |
2.23742 kcal/mol |
0.70263 kcal/mol |
251 268@LB@ | |@LB@5'-UGU...UGUCG AGGGA...UCU-3'@LB@ GCUUCAU@LB@ |||||||@LB@ CGAAGUA@LB@3'-UUU...GGGAA G-5'@LB@ | |@LB@ 209 192@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -9.41561 kcal/mol@LB@Unfolding Energy - mRNA 2.23742 kcal/mol@LB@Unfolding Energy - sRNA 0.70263 kcal/mol@LB@@LB@Position - mRNA 252 -- 267@LB@Position - sRNA 193 -- 208@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 2 -- 8@LB@ |
191 |
0.02237 |
0.3833 |
b1658 |
purR |
-11.05 |
0.172432 |
254 -- 265 |
163 -- 174 |
transcriptional repressor hypoxanthine-binding |
|
_____________253_______________266\n_____________|_________________|\n5'-UUU...CUACA___GU____________CAACA...GCA-3'\n______________ACU__GUCACACGUGAU\n______________|||__|||||||:||||\n______________UGA__CAGUGUGUACUA\n3'-UUU...GGUUA___GU____________CGUCC...UAG-5'\n_____________|_________________|\n_____________175_______________162\n |
259 -- 265 |
163 -- 169 |
-20.3148 kcal/mol |
3.57431 kcal/mol |
4.30742 kcal/mol |
253 266@LB@ | |@LB@5'-UUU...CUACA GU CAACA...GCA-3'@LB@ ACU GUCACACGUGAU@LB@ ||| |||||||:||||@LB@ UGA CAGUGUGUACUA@LB@3'-UUU...GGUUA GU CGUCC...UAG-5'@LB@ | |@LB@ 175 162@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -20.3148 kcal/mol@LB@Unfolding Energy - mRNA 3.57431 kcal/mol@LB@Unfolding Energy - sRNA 4.30742 kcal/mol@LB@@LB@Position - mRNA 254 -- 265@LB@Position - sRNA 163 -- 174@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 163 -- 169@LB@ |
129 |
0.01414 |
0.3575 |
b3579 |
yiaO |
-11.03 |
0.174508 |
249 -- 273 |
50 -- 76 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________248_________________________274\n_____________|___________________________|\n5'-ACU...CGUCC____________C__UA__________UUGUU...AAA-3'\n______________UGGUUUUAUAUU_AU__UUAGUCGUAU\n______________||:|||||:|::_||__|:||||::|:\n______________ACUAAAAUGUGG_UA__AGUCAGUGUG\n3'-UUU...CGCCC____________U__UG__________UACUA...UAG-5'\n_____________|___________________________|\n_____________77__________________________49\n |
132 -- 138 |
168 -- 174 |
-19.0823 kcal/mol |
5.4875 kcal/mol |
5.03533 kcal/mol |
248 274@LB@ | |@LB@5'-ACU...CGUCC C UA UUGUU...AAA-3'@LB@ UGGUUUUAUAUU AU UUAGUCGUAU@LB@ ||:|||||:|:: || |:||||::|:@LB@ ACUAAAAUGUGG UA AGUCAGUGUG@LB@3'-UUU...CGCCC U UG UACUA...UAG-5'@LB@ | |@LB@ 77 49@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -19.0823 kcal/mol@LB@Unfolding Energy - mRNA 5.4875 kcal/mol@LB@Unfolding Energy - sRNA 5.03533 kcal/mol@LB@@LB@Position - mRNA 249 -- 273@LB@Position - sRNA 50 -- 76@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 168 -- 174@LB@ |
133 |
0.01432 |
0.3575 |
b2342 |
fadI |
-11.00 |
0.176527 |
78 -- 109 |
125 -- 153 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________77________________________________110\n_____________|_________________________________|\n5'-UCC...UCUCU__UU_____CUCUC________UAGC_______UUCCC...AUG-3'\n______________UC__CUUUU_____UGU_GUCA____UCCCACU\n______________||__||||:_____||:_||||____|||||||\n______________AG__GAAAG_____ACG_CAGU____AGGGUGA\n3'-UUU...CGUUC__UU_____UCUUA___C_______________CGUAG...UAG-5'\n_____________|_________________________________|\n_____________154_______________________________124\n |
103 -- 109 |
125 -- 131 |
-19.0317 kcal/mol |
1.6674 kcal/mol |
9.91012 kcal/mol |
77 110@LB@ | |@LB@5'-UCC...UCUCU UU CUCUC UAGC UUCCC...AUG-3'@LB@ UC CUUUU UGU GUCA UCCCACU@LB@ || ||||: ||: |||| |||||||@LB@ AG GAAAG ACG CAGU AGGGUGA@LB@3'-UUU...CGUUC UU UCUUA C CGUAG...UAG-5'@LB@ | |@LB@ 154 124@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.0317 kcal/mol@LB@Unfolding Energy - mRNA 1.6674 kcal/mol@LB@Unfolding Energy - sRNA 9.91012 kcal/mol@LB@@LB@Position - mRNA 78 -- 109@LB@Position - sRNA 125 -- 153@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 125 -- 131@LB@ |
43 |
0.003721 |
0.2912 |
b3232 |
zapE |
-10.85 |
0.189153 |
236 -- 256 |
70 -- 90 |
divisome ATPase |
|
_____________235___________257\n_____________|_____________|\n5'-AGG...AACGG____UU_______AACCG...AAA-3'\n______________CCUU__UUUCGUC\n______________||||__:|||:||\n______________GGAA__GAAGUAG\n3'-UUU...GUGGG____C________-5'\n_____________|____________|\n_____________91___________70\n |
146 -- 152 |
1 -- 7 |
-9.27362 kcal/mol |
0.691484 kcal/mol |
1.04836 kcal/mol |
235 257@LB@ | |@LB@5'-AGG...AACGG UU AACCG...AAA-3'@LB@ CCUU UUUCGUC@LB@ |||| :|||:||@LB@ GGAA GAAGUAG@LB@3'-UUU...GUGGG C -5'@LB@ | |@LB@ 91 70@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -9.27362 kcal/mol@LB@Unfolding Energy - mRNA 0.691484 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 236 -- 256@LB@Position - sRNA 70 -- 90@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 1 -- 7@LB@ |
124 |
0.0136 |
0.3575 |
b4065 |
yjcE |
-10.85 |
0.188871 |
258 -- 289 |
125 -- 174 |
putative cation/proton antiporter |
|
_____________257___________290\n_____________|_____________|\n5'-UAU...UGGUC_____U_______CCUUU...UGC-3'\n______________ACUCG_GUCAUGC\n______________||||:_||||::|\n______________UGAGU_CAGUGUG\n3'-UUU...GGUUA_____________UACUA...UAG-5'\n_____________|_____________|\n_____________175___________124\n |
267 -- 273 |
168 -- 174 |
-13.2629 kcal/mol |
3.88311 kcal/mol |
0.283892 kcal/mol |
257 290@LB@ | |@LB@5'-UAU...UGGUC U CCUUU...UGC-3'@LB@ ACUCG GUCAUGC@LB@ ||||: ||||::|@LB@ UGAGU CAGUGUG@LB@3'-UUU...GGUUA UACUA...UAG-5'@LB@ | |@LB@ 175 124@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -13.2629 kcal/mol@LB@Unfolding Energy - mRNA 3.88311 kcal/mol@LB@Unfolding Energy - sRNA 0.283892 kcal/mol@LB@@LB@Position - mRNA 258 -- 289@LB@Position - sRNA 125 -- 174@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 168 -- 174@LB@ |
143 |
0.01531 |
0.3575 |
b1641 |
slyB |
-10.83 |
0.190300 |
158 -- 167 |
83 -- 92 |
outer membrane lipoprotein |
|
_____________157____________________________168\n_____________|______________________________|\n5'-CCG...UCACA_______U______UGAC____AGG_____UUGCG...AAG-3'\n______________UAUGCCA_AUACUU____CAUG___GAUGC\n______________||::|||_|||||:____||::___|||||\n______________AUGUGGU_UAUGAG____GUGU___CUACG\n3'-UUU...CUAAA______________UCA_____GUA_____UCCGU...UAG-5'\n_____________|______________________________|\n_____________93_____________________________82\n |
135 -- 141 |
182 -- 188 |
-20.8318 kcal/mol |
7.22081 kcal/mol |
7.72227 kcal/mol |
157 168@LB@ | |@LB@5'-CCG...UCACA U UGAC AGG UUGCG...AAG-3'@LB@ UAUGCCA AUACUU CAUG GAUGC@LB@ ||::||| |||||: ||:: |||||@LB@ AUGUGGU UAUGAG GUGU CUACG@LB@3'-UUU...CUAAA UCA GUA UCCGU...UAG-5'@LB@ | |@LB@ 93 82@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -20.8318 kcal/mol@LB@Unfolding Energy - mRNA 7.22081 kcal/mol@LB@Unfolding Energy - sRNA 7.72227 kcal/mol@LB@@LB@Position - mRNA 158 -- 167@LB@Position - sRNA 83 -- 92@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 182 -- 188@LB@ |
149 |
0.01599 |
0.3612 |
b3236 |
mdh |
-10.77 |
0.195799 |
223 -- 232 |
196 -- 205 |
malate dehydrogenase NAD(P)-binding |
|
_____________222_____233\n_____________|_______|\n5'-GUU...AUGAA_______GUCCU...AUG-3'\n______________AGUCGCA\n______________||||:||\n______________UCAGUGU\n3'-UUU...AUGAG_______GUACU...UAG-5'\n_____________|_______|\n_____________206_____195\n |
206 -- 212 |
169 -- 175 |
-8.87418 kcal/mol |
1.40028 kcal/mol |
0.26566 kcal/mol |
222 233@LB@ | |@LB@5'-GUU...AUGAA GUCCU...AUG-3'@LB@ AGUCGCA@LB@ ||||:||@LB@ UCAGUGU@LB@3'-UUU...AUGAG GUACU...UAG-5'@LB@ | |@LB@ 206 195@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -8.87418 kcal/mol@LB@Unfolding Energy - mRNA 1.40028 kcal/mol@LB@Unfolding Energy - sRNA 0.26566 kcal/mol@LB@@LB@Position - mRNA 223 -- 232@LB@Position - sRNA 196 -- 205@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 169 -- 175@LB@ |
39 |
0.003509 |
0.2912 |
b1293 |
sapB |
-10.75 |
0.197427 |
9 -- 16 |
196 -- 203 |
antimicrobial peptide transport ABC transporter permease |
|
_____________8____________17\n_____________|____________|\n5'-UCG...UAUUU_______CA___GC-3'\n______________CACCCCU__UGC\n______________||||||:__|||\n______________GUGGGGG__ACG\n3'-UUU...ACCCC_______A____AAGUAG-5'\n_____________|____________|\n_____________204__________195\n |
287 -- 293 |
11 -- 17 |
-15.5024 kcal/mol |
0.267702 kcal/mol |
6.55606 kcal/mol |
8 17@LB@ | |@LB@5'-UCG...UAUUU CA GC-3'@LB@ CACCCCU UGC@LB@ ||||||: |||@LB@ GUGGGGG ACG@LB@3'-UUU...ACCCC A AAGUAG-5'@LB@ | |@LB@ 204 195@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -15.5024 kcal/mol@LB@Unfolding Energy - mRNA 0.267702 kcal/mol@LB@Unfolding Energy - sRNA 6.55606 kcal/mol@LB@@LB@Position - mRNA 9 -- 16@LB@Position - sRNA 196 -- 203@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 11 -- 17@LB@ |