| 2 |
4.964e-05 |
0.08352 |
b0475 |
hemH |
-12.83 |
0.075395 |
238 -- 275 |
45 -- 93 |
ferrochelatase |
|
_____________237______________________________________________________________________276\n_____________|________________________________________________________________________|\n5'-CGG...AGACU_______________C__________AAACCU_____________C_______C_C_______C___A____UAAAA...GCG-3'\n______________AAAACC____GGUAU___CUGCUGGC______GGGU______ACG_CCGAUGC_C___CACAC_UGA_GCGG\n______________||||||____|||||___||||||||______||||______||:_||:||:|_|___|||||_|||_||:|\n______________UUUUGG____CCAUA___GACGACCG______CCCA______UGU_GGUUAUG_G___GUGUG_ACU_CGUC\n_______3'-UUUU______UCGU_____UUA__________________CUAAAA___________A_UCA_____U___A____CGUUC...UAG-5'\n_____________|________________________________________________________________________|\n_____________94_______________________________________________________________________44\n |
247 -- 253 |
178 -- 184 |
-50.8068 kcal/mol |
15.6732 kcal/mol |
22.9013 kcal/mol |
237 276@LB@ | |@LB@5'-CGG...AGACU C AAACCU C C C C A UAAAA...GCG-3'@LB@ AAAACC GGUAU CUGCUGGC GGGU ACG CCGAUGC C CACAC UGA GCGG@LB@ |||||| ||||| |||||||| |||| ||: ||:||:| | ||||| ||| ||:|@LB@ UUUUGG CCAUA GACGACCG CCCA UGU GGUUAUG G GUGUG ACU CGUC@LB@ 3'-UUUU UCGU UUA CUAAAA A UCA U A CGUUC...UAG-5'@LB@ | |@LB@ 94 44@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -50.8068 kcal/mol@LB@Unfolding Energy - mRNA 15.6732 kcal/mol@LB@Unfolding Energy - sRNA 22.9013 kcal/mol@LB@@LB@Position - mRNA 238 -- 275@LB@Position - sRNA 45 -- 93@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 178 -- 184@LB@ |
| 142 |
0.01524 |
0.3575 |
b0611 |
rna |
-12.80 |
0.076457 |
138 -- 176 |
173 -- 202 |
ribonuclease I |
|
_____________137_____________________________________177\n_____________|_______________________________________|\n5'-UAC...CCCAC________CUUUUUUA______A___GA___________GUAUG...AUU-3'\n______________CUGGCGGG________UGAUUU_AUA__UAGUAUUCAGU\n______________||||||||________||||||_|:|__:|:||:|||||\n______________GACCGCCC________ACUAAA_UGU__GUUAUGAGUCA\n3'-UUU...UAGAC______________________A___G____________GUGUG...UAG-5'\n_____________|_______________________________________|\n_____________203_____________________________________172\n |
170 -- 176 |
173 -- 179 |
-31.7889 kcal/mol |
9.30484 kcal/mol |
14.6886 kcal/mol |
137 177@LB@ | |@LB@5'-UAC...CCCAC CUUUUUUA A GA GUAUG...AUU-3'@LB@ CUGGCGGG UGAUUU AUA UAGUAUUCAGU@LB@ |||||||| |||||| |:| :|:||:|||||@LB@ GACCGCCC ACUAAA UGU GUUAUGAGUCA@LB@3'-UUU...UAGAC A G GUGUG...UAG-5'@LB@ | |@LB@ 203 172@LB@@LB@@LB@Energy -12.80 kcal/mol@LB@Hybridization Energy -31.7889 kcal/mol@LB@Unfolding Energy - mRNA 9.30484 kcal/mol@LB@Unfolding Energy - sRNA 14.6886 kcal/mol@LB@@LB@Position - mRNA 138 -- 176@LB@Position - sRNA 173 -- 202@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 173 -- 179@LB@ |
| 30 |
0.002398 |
0.2633 |
b0494 |
tesA |
-12.69 |
0.080698 |
14 -- 26 |
126 -- 138 |
acyl-CoA thioesterase 1 and protease I and lysophospholipase L1 |
|
_____________13____________27\n_____________|_____________|\n5'-UCC...AUGUA_____________CAGAC...UGG-3'\n______________GCGGUUGUCCCAC\n______________|||||::||||||\n______________CGCCAGUAGGGUG\n3'-UUU...CUUAA_____________ACGUA...UAG-5'\n_____________|_____________|\n_____________139___________125\n |
20 -- 26 |
126 -- 132 |
-24.3083 kcal/mol |
5.59054 kcal/mol |
8.249 kcal/mol |
13 27@LB@ | |@LB@5'-UCC...AUGUA CAGAC...UGG-3'@LB@ GCGGUUGUCCCAC@LB@ |||||::||||||@LB@ CGCCAGUAGGGUG@LB@3'-UUU...CUUAA ACGUA...UAG-5'@LB@ | |@LB@ 139 125@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -24.3083 kcal/mol@LB@Unfolding Energy - mRNA 5.59054 kcal/mol@LB@Unfolding Energy - sRNA 8.249 kcal/mol@LB@@LB@Position - mRNA 14 -- 26@LB@Position - sRNA 126 -- 138@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 126 -- 132@LB@ |
| 182 |
0.02094 |
0.3833 |
b0248 |
yafX |
-12.67 |
0.081205 |
189 -- 235 |
52 -- 92 |
CP4-6 prophage; uncharacterized protein |
b2643 |
_____________188______________________236\n_____________|________________________|\n5'-CCG...ACACA___G_________C____ACC___UAACC...GGC-3'\n______________GAC_CAGCACGAC_UCGC___CGC\n______________:||_||||||:||_||||___|||\n______________UUG_GUCGUGUUG_AGCG___GCG\n3'-UUU...UUGCG_____________A____ACA___CCAUU...UAG-5'\n_____________|________________________|\n_____________93_______________________51\n |
218 -- 224 |
63 -- 69 |
-27.2596 kcal/mol |
3.0161 kcal/mol |
15.5954 kcal/mol |
188 236@LB@ | |@LB@5'-CCG...ACACA G C ACC UAACC...GGC-3'@LB@ GAC CAGCACGAC UCGC CGC@LB@ :|| ||||||:|| |||| |||@LB@ UUG GUCGUGUUG AGCG GCG@LB@3'-UUU...UUGCG A ACA CCAUU...UAG-5'@LB@ | |@LB@ 93 51@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -27.2596 kcal/mol@LB@Unfolding Energy - mRNA 3.0161 kcal/mol@LB@Unfolding Energy - sRNA 15.5954 kcal/mol@LB@@LB@Position - mRNA 189 -- 235@LB@Position - sRNA 52 -- 92@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 93 |
0.01041 |
0.3575 |
b3556 |
cspA |
-12.65 |
0.082193 |
78 -- 98 |
139 -- 160 |
RNA chaperone and antiterminator cold-inducible |
|
_____________77_____________________99\n_____________|______________________|\n5'-AUU...UAGUA_________C____CA______AUCGU...ACU-3'\n______________AGGCAAGUC__CUU__AGAGUU\n______________|||||||||__|||__|||:||\n______________UCCGUUCAG__GAA__UCUUAA\n3'-UUU...CUACG_________UU___AG______CGCCA...UAG-5'\n_____________|______________________|\n_____________161____________________138\n |
80 -- 86 |
152 -- 158 |
-20.4019 kcal/mol |
4.68257 kcal/mol |
5.76704 kcal/mol |
77 99@LB@ | |@LB@5'-AUU...UAGUA C CA AUCGU...ACU-3'@LB@ AGGCAAGUC CUU AGAGUU@LB@ ||||||||| ||| |||:||@LB@ UCCGUUCAG GAA UCUUAA@LB@3'-UUU...CUACG UU AG CGCCA...UAG-5'@LB@ | |@LB@ 161 138@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -20.4019 kcal/mol@LB@Unfolding Energy - mRNA 4.68257 kcal/mol@LB@Unfolding Energy - sRNA 5.76704 kcal/mol@LB@@LB@Position - mRNA 78 -- 98@LB@Position - sRNA 139 -- 160@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 152 -- 158@LB@ |
| 9 |
0.0005653 |
0.1842 |
b3527 |
yhjJ |
-12.58 |
0.084694 |
198 -- 237 |
133 -- 170 |
putative periplasmic M16 family chaperone |
|
_____________197__________________________________________________238\n_____________|____________________________________________________|\n5'-CUC...GUUGA____GGGUU______CA_______CAAAAAU___________CGG_______UGCUG...GGC-3'\n______________UCAG_____CACAUG____GGGCA_______UCGACUUUUAG____GCGGUU\n______________||||_____||||||____:||||_______||:|||||:||____|||||:\n______________AGUC_____GUGUAC____UCCGU_______AGUUGAAAGUC____CGCCAG\n3'-UUU...UUAUG____AGU________UACG_____UC________________UUAA______UAGGG...UAG-5'\n_____________|____________________________________________________|\n_____________171__________________________________________________132\n |
222 -- 228 |
143 -- 149 |
-37.5898 kcal/mol |
10.9006 kcal/mol |
12.7286 kcal/mol |
197 238@LB@ | |@LB@5'-CUC...GUUGA GGGUU CA CAAAAAU CGG UGCUG...GGC-3'@LB@ UCAG CACAUG GGGCA UCGACUUUUAG GCGGUU@LB@ |||| |||||| :|||| ||:|||||:|| |||||:@LB@ AGUC GUGUAC UCCGU AGUUGAAAGUC CGCCAG@LB@3'-UUU...UUAUG AGU UACG UC UUAA UAGGG...UAG-5'@LB@ | |@LB@ 171 132@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -37.5898 kcal/mol@LB@Unfolding Energy - mRNA 10.9006 kcal/mol@LB@Unfolding Energy - sRNA 12.7286 kcal/mol@LB@@LB@Position - mRNA 198 -- 237@LB@Position - sRNA 133 -- 170@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 143 -- 149@LB@ |
| 99 |
0.01084 |
0.3575 |
b0872 |
hcr |
-12.58 |
0.084706 |
106 -- 121 |
192 -- 205 |
HCP oxidoreductase NADH-dependent |
|
_____________105______________122\n_____________|________________|\n5'-UCC...CAGAC__________U_C___ACGAG...AUU-3'\n______________CUGCUGGCGG_G_UGA\n______________||||||||||_|_|||\n______________GACGACCGCC_C_ACU\n3'-UUU...UAUUA________________AAAAU...UAG-5'\n_____________|________________|\n_____________206______________191\n |
109 -- 115 |
196 -- 202 |
-24.2797 kcal/mol |
6.55023 kcal/mol |
9.06563 kcal/mol |
105 122@LB@ | |@LB@5'-UCC...CAGAC U C ACGAG...AUU-3'@LB@ CUGCUGGCGG G UGA@LB@ |||||||||| | |||@LB@ GACGACCGCC C ACU@LB@3'-UUU...UAUUA AAAAU...UAG-5'@LB@ | |@LB@ 206 191@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -24.2797 kcal/mol@LB@Unfolding Energy - mRNA 6.55023 kcal/mol@LB@Unfolding Energy - sRNA 9.06563 kcal/mol@LB@@LB@Position - mRNA 106 -- 121@LB@Position - sRNA 192 -- 205@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 196 -- 202@LB@ |
| 51 |
0.005002 |
0.3217 |
b0115 |
aceF |
-12.52 |
0.087110 |
146 -- 171 |
149 -- 173 |
pyruvate dehydrogenase dihydrolipoyltransacetylase component E2 |
|
_____________145______________________________________172\n_____________|________________________________________|\n5'-GAU...GCAAU_____________________C_______AUA________CCGCG...CGC-3'\n______________CGCCAA_AUUCA_____ACAU_GAUGCAG___AAGUUAAC\n______________|:||||_|:|||_____||||_|||||||___||||:|||\n______________GUGGUU_UGAGU_____UGUA_CUACGUC___UUCAGUUG\n3'-UUU...AAAAU______A_____CAGUG____________CG_________AAAGU...UAG-5'\n_____________|________________________________________|\n_____________174______________________________________148\n |
165 -- 171 |
149 -- 155 |
-31.6788 kcal/mol |
5.24034 kcal/mol |
12.6269 kcal/mol |
145 172@LB@ | |@LB@5'-GAU...GCAAU C AUA CCGCG...CGC-3'@LB@ CGCCAA AUUCA ACAU GAUGCAG AAGUUAAC@LB@ |:|||| |:||| |||| ||||||| ||||:|||@LB@ GUGGUU UGAGU UGUA CUACGUC UUCAGUUG@LB@3'-UUU...AAAAU A CAGUG CG AAAGU...UAG-5'@LB@ | |@LB@ 174 148@LB@@LB@@LB@Energy -12.52 kcal/mol@LB@Hybridization Energy -31.6788 kcal/mol@LB@Unfolding Energy - mRNA 5.24034 kcal/mol@LB@Unfolding Energy - sRNA 12.6269 kcal/mol@LB@@LB@Position - mRNA 146 -- 171@LB@Position - sRNA 149 -- 173@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 19 |
0.001698 |
0.2633 |
b2575 |
trmN |
-12.50 |
0.088044 |
81 -- 92 |
14 -- 25 |
tRNA1(Val) (adenine(37)-N6)-methyltransferase |
|
_____________80___________93\n_____________|____________|\n5'-ACC...UACAU__G_________GUAAU...GUA-3'\n______________CC_UGCUUCGUC\n______________||_||||||:||\n______________GG_ACGAAGUAG\n3'-UUU...GUGGG__A_________-5'\n_____________|___________|\n_____________26__________14\n |
222 -- 228 |
1 -- 7 |
-15.2724 kcal/mol |
3.783 kcal/mol |
1.04836 kcal/mol |
80 93@LB@ | |@LB@5'-ACC...UACAU G GUAAU...GUA-3'@LB@ CC UGCUUCGUC@LB@ || ||||||:||@LB@ GG ACGAAGUAG@LB@3'-UUU...GUGGG A -5'@LB@ | |@LB@ 26 14@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -15.2724 kcal/mol@LB@Unfolding Energy - mRNA 3.783 kcal/mol@LB@Unfolding Energy - sRNA 1.04836 kcal/mol@LB@@LB@Position - mRNA 81 -- 92@LB@Position - sRNA 14 -- 25@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 107 |
0.01169 |
0.3575 |
b3858 |
yihD |
-12.50 |
0.087903 |
89 -- 104 |
63 -- 77 |
DUF1040 protein YihD |
|
_____________88______________________________105\n_____________|_______________________________|\n5'-AUA...UUUAC___CU___________GCC____AUC_____CAUCA...CGA-3'\n______________CGC__GCCAGCACAAC___UGUU___GUCGU\n______________|||__:||||||||||___:|:|___||||:\n______________GCG__UGGUCGUGUUG___GCGA___CAGCG\n3'-UUU...UGGUU___U____________AA_____________CCAUU...UAG-5'\n_____________|_______________________________|\n_____________78______________________________62\n |
98 -- 104 |
63 -- 69 |
-31.4348 kcal/mol |
4.67185 kcal/mol |
17.7932 kcal/mol |
88 105@LB@ | |@LB@5'-AUA...UUUAC CU GCC AUC CAUCA...CGA-3'@LB@ CGC GCCAGCACAAC UGUU GUCGU@LB@ ||| :|||||||||| :|:| ||||:@LB@ GCG UGGUCGUGUUG GCGA CAGCG@LB@3'-UUU...UGGUU U AA CCAUU...UAG-5'@LB@ | |@LB@ 78 62@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -31.4348 kcal/mol@LB@Unfolding Energy - mRNA 4.67185 kcal/mol@LB@Unfolding Energy - sRNA 17.7932 kcal/mol@LB@@LB@Position - mRNA 89 -- 104@LB@Position - sRNA 63 -- 77@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 63 -- 69@LB@ |
