44 |
0.003817 |
0.292 |
b0967 |
rlmI |
-10.41 |
0.230051 |
81 -- 118 |
128 -- 161 |
23S rRNA m(5)C1962 methyltransferase SAM-dependent |
|
_____________80_________________________________119\n_____________|__________________________________|\n5'-CGU...UGAAC____C___AAACC_______UUAU_CA_______GACAU...AAG-3'\n______________UCGC_CGU_____CAGGCAA____G__GACUUUC\n______________||:|_|:|_____|||||||____|__:||||||\n______________AGUG_GUA_____GUCCGUU____C__UUGAAAG\n3'-UUU...GAGUC____U___CUAC_____________AG_______UCUUA...UAG-5'\n_____________|__________________________________|\n_____________162________________________________127\n |
95 -- 101 |
145 -- 151 |
-21.0542 kcal/mol |
5.99356 kcal/mol |
7.97203 kcal/mol |
80 119@LB@ | |@LB@5'-CGU...UGAAC C AAACC UUAU CA GACAU...AAG-3'@LB@ UCGC CGU CAGGCAA G GACUUUC@LB@ ||:| |:| ||||||| | :||||||@LB@ AGUG GUA GUCCGUU C UUGAAAG@LB@3'-UUU...GAGUC U CUAC AG UCUUA...UAG-5'@LB@ | |@LB@ 162 127@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -21.0542 kcal/mol@LB@Unfolding Energy - mRNA 5.99356 kcal/mol@LB@Unfolding Energy - sRNA 7.97203 kcal/mol@LB@@LB@Position - mRNA 81 -- 118@LB@Position - sRNA 128 -- 161@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 145 -- 151@LB@ |
117 |
0.01283 |
0.3575 |
b3096 |
mzrA |
-10.41 |
0.230387 |
15 -- 55 |
168 -- 208 |
modulator of EnvZ/OmpR regulon |
|
_____________14________________________________________________________56\n_____________|_________________________________________________________|\n_____5'-UCAACU____G____________________________GAUCCUGA___CU__G________GCUCG...AGC-3'\n______________GGAU_AGCGG______UCUGCU_GUGGGU_AUU________CAA__CU_GGUUACAU\n______________::|:_|||:|______||||||_|:||||_|||________|||__||_:||:|||:\n______________UUUG_UCGUC______AGACGA_CGCCCA_UAA________GUU__GA_UCAGUGUG\n______3'-UUUUU____G_____CAUAUU______C______C___AAUGUG_____AU__G________UACUA...UAG-5'\n_____________|_________________________________________________________|\n_____________209_______________________________________________________167\n |
49 -- 55 |
168 -- 174 |
-40.4023 kcal/mol |
11.8856 kcal/mol |
18.3074 kcal/mol |
14 56@LB@ | |@LB@ 5'-UCAACU G GAUCCUGA CU G GCUCG...AGC-3'@LB@ GGAU AGCGG UCUGCU GUGGGU AUU CAA CU GGUUACAU@LB@ ::|: |||:| |||||| |:|||| ||| ||| || :||:|||:@LB@ UUUG UCGUC AGACGA CGCCCA UAA GUU GA UCAGUGUG@LB@ 3'-UUUUU G CAUAUU C C AAUGUG AU G UACUA...UAG-5'@LB@ | |@LB@ 209 167@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -40.4023 kcal/mol@LB@Unfolding Energy - mRNA 11.8856 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 15 -- 55@LB@Position - sRNA 168 -- 208@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 168 -- 174@LB@ |
108 |
0.01175 |
0.3575 |
b0723 |
sdhA |
-10.39 |
0.232370 |
178 -- 209 |
28 -- 62 |
succinate dehydrogenase flavoprotein subunit |
|
_____________177_______________________210\n_____________|_________________________|\n5'-GGU...GAAAU__________G_G_AUU________UUGUG...GUG-3'\n______________UGC_CAGUCA_A_A___UGAUGCAG\n______________|:|_||||||_|_|___||||||||\n______________AUG_GUCAGU_U_U___ACUACGUC\n3'-UUU...UGGUU___A______G_G____________CGUUC...UAG-5'\n_____________|_________________________|\n_____________63________________________27\n |
225 -- 231 |
159 -- 165 |
-22.5908 kcal/mol |
8.24888 kcal/mol |
4.81331 kcal/mol |
177 210@LB@ | |@LB@5'-GGU...GAAAU G G AUU UUGUG...GUG-3'@LB@ UGC CAGUCA A A UGAUGCAG@LB@ |:| |||||| | | ||||||||@LB@ AUG GUCAGU U U ACUACGUC@LB@3'-UUU...UGGUU A G G CGUUC...UAG-5'@LB@ | |@LB@ 63 27@LB@@LB@@LB@Energy -10.39 kcal/mol@LB@Hybridization Energy -22.5908 kcal/mol@LB@Unfolding Energy - mRNA 8.24888 kcal/mol@LB@Unfolding Energy - sRNA 4.81331 kcal/mol@LB@@LB@Position - mRNA 178 -- 209@LB@Position - sRNA 28 -- 62@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 159 -- 165@LB@ |
46 |
0.004081 |
0.2985 |
b2466 |
ypfG |
-10.37 |
0.233995 |
256 -- 280 |
68 -- 95 |
DUF1176 family protein |
|
_____________255_____281\n_____________|_______|\n5'-AAA...CAAAC_______UUAAU...UCA-3'\n______________GUCACAU\n______________||||||:\n______________CAGUGUG\n3'-UUU...UGAGU_______UACUA...UAG-5'\n_____________|_______|\n_____________96______67\n |
57 -- 63 |
168 -- 174 |
-9.42181 kcal/mol |
2.13246 kcal/mol |
0.260649 kcal/mol |
255 281@LB@ | |@LB@5'-AAA...CAAAC UUAAU...UCA-3'@LB@ GUCACAU@LB@ ||||||:@LB@ CAGUGUG@LB@3'-UUU...UGAGU UACUA...UAG-5'@LB@ | |@LB@ 96 67@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -9.42181 kcal/mol@LB@Unfolding Energy - mRNA 2.13246 kcal/mol@LB@Unfolding Energy - sRNA 0.260649 kcal/mol@LB@@LB@Position - mRNA 256 -- 280@LB@Position - sRNA 68 -- 95@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 168 -- 174@LB@ |
85 |
0.009065 |
0.3575 |
b3155 |
yhbQ |
-10.34 |
0.236900 |
54 -- 88 |
123 -- 160 |
GIY-YIG nuclease superfamily protein |
|
_____________53______________________89\n_____________|_______________________|\n5'-UUU...GAUCC_____G__GACAAUAA_______ACCGG...GCG-3'\n______________GUACC_CC________GCUUUAU\n______________|:|||_||________||||:||\n______________CGUGG_GG________CGAAGUA\n3'-UUU...UACCC_____G__AA_____________G-5'\n_____________|_______________________|\n_____________161_____________________122\n |
245 -- 251 |
2 -- 8 |
-16.2438 kcal/mol |
1.2562 kcal/mol |
7.2187 kcal/mol |
53 89@LB@ | |@LB@5'-UUU...GAUCC G GACAAUAA ACCGG...GCG-3'@LB@ GUACC CC GCUUUAU@LB@ |:||| || ||||:||@LB@ CGUGG GG CGAAGUA@LB@3'-UUU...UACCC G AA G-5'@LB@ | |@LB@ 161 122@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -16.2438 kcal/mol@LB@Unfolding Energy - mRNA 1.2562 kcal/mol@LB@Unfolding Energy - sRNA 7.2187 kcal/mol@LB@@LB@Position - mRNA 54 -- 88@LB@Position - sRNA 123 -- 160@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 2 -- 8@LB@ |
190 |
0.02217 |
0.3833 |
b2754 |
ygbF |
-10.33 |
0.238061 |
176 -- 225 |
124 -- 165 |
CRISPR adaptation ssRNA endonuclease |
|
_____________175____________226\n_____________|______________|\n5'-UGG...AAAAU________GC____ACGAG...GUG-3'\n______________GUACCUCC__GCUU\n______________|:|||:||__||||\n______________CGUGGGGG__CGAA\n3'-UUU...UACCC________AA____GUAG-5'\n_____________|______________|\n_____________166____________123\n |
232 -- 238 |
11 -- 17 |
-17.8256 kcal/mol |
3.33543 kcal/mol |
6.90657 kcal/mol |
175 226@LB@ | |@LB@5'-UGG...AAAAU GC ACGAG...GUG-3'@LB@ GUACCUCC GCUU@LB@ |:|||:|| ||||@LB@ CGUGGGGG CGAA@LB@3'-UUU...UACCC AA GUAG-5'@LB@ | |@LB@ 166 123@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -17.8256 kcal/mol@LB@Unfolding Energy - mRNA 3.33543 kcal/mol@LB@Unfolding Energy - sRNA 6.90657 kcal/mol@LB@@LB@Position - mRNA 176 -- 225@LB@Position - sRNA 124 -- 165@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 11 -- 17@LB@ |
92 |
0.01029 |
0.3575 |
b3360 |
pabA |
-10.28 |
0.244097 |
93 -- 100 |
16 -- 23 |
aminodeoxychorismate synthase subunit II |
|
_____________92__________101\n_____________|___________|\n5'-GCG...ACCUC___________UUGUG...CGU-3'\n______________UACCAGUACUU\n______________:||||:||||:\n______________GUGGUUAUGAG\n3'-UUU...AAAAU___________UCAGU...UAG-5'\n_____________|___________|\n_____________24__________15\n |
250 -- 256 |
176 -- 182 |
-13.2399 kcal/mol |
3.06354 kcal/mol |
3.38772 kcal/mol |
92 101@LB@ | |@LB@5'-GCG...ACCUC UUGUG...CGU-3'@LB@ UACCAGUACUU@LB@ :||||:||||:@LB@ GUGGUUAUGAG@LB@3'-UUU...AAAAU UCAGU...UAG-5'@LB@ | |@LB@ 24 15@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -13.2399 kcal/mol@LB@Unfolding Energy - mRNA 3.06354 kcal/mol@LB@Unfolding Energy - sRNA 3.38772 kcal/mol@LB@@LB@Position - mRNA 93 -- 100@LB@Position - sRNA 16 -- 23@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 176 -- 182@LB@ |
152 |
0.0171 |
0.3749 |
b3605 |
lldD |
-10.23 |
0.248595 |
212 -- 221 |
68 -- 77 |
L-lactate dehydrogenase FMN-linked |
|
_____________211_______222\n_____________|_________|\n5'-UUU...GAAAA_________UAUUU...ACA-3'\n______________ACGCAUGAU\n______________||:||||||\n______________UGUGUACUA\n3'-UUU...GUCAG_________CGUCC...UAG-5'\n_____________|_________|\n_____________78________67\n |
199 -- 205 |
163 -- 169 |
-11.1438 kcal/mol |
1.00002 kcal/mol |
4.14962 kcal/mol |
211 222@LB@ | |@LB@5'-UUU...GAAAA UAUUU...ACA-3'@LB@ ACGCAUGAU@LB@ ||:||||||@LB@ UGUGUACUA@LB@3'-UUU...GUCAG CGUCC...UAG-5'@LB@ | |@LB@ 78 67@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -11.1438 kcal/mol@LB@Unfolding Energy - mRNA 1.00002 kcal/mol@LB@Unfolding Energy - sRNA 4.14962 kcal/mol@LB@@LB@Position - mRNA 212 -- 221@LB@Position - sRNA 68 -- 77@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
186 |
0.02152 |
0.3833 |
b3581 |
sgbH |
-10.17 |
0.255482 |
135 -- 158 |
123 -- 153 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________134________159\n_____________|__________|\n5'-UUU...UAAGG__________UAUGA...AAG-3'\n______________AG_CACACAU\n______________||_|||||||\n______________UC_GUGUGUA\n3'-UUU...AUGAG__A_______CUACG...UAG-5'\n_____________|__________|\n_____________154________122\n |
193 -- 199 |
166 -- 172 |
-9.15702 kcal/mol |
1.98532 kcal/mol |
0.591348 kcal/mol |
134 159@LB@ | |@LB@5'-UUU...UAAGG UAUGA...AAG-3'@LB@ AG CACACAU@LB@ || |||||||@LB@ UC GUGUGUA@LB@3'-UUU...AUGAG A CUACG...UAG-5'@LB@ | |@LB@ 154 122@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -9.15702 kcal/mol@LB@Unfolding Energy - mRNA 1.98532 kcal/mol@LB@Unfolding Energy - sRNA 0.591348 kcal/mol@LB@@LB@Position - mRNA 135 -- 158@LB@Position - sRNA 123 -- 153@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 166 -- 172@LB@ |
197 |
0.02355 |
0.3833 |
b2764 |
cysJ |
-10.17 |
0.255883 |
3 -- 30 |
98 -- 123 |
sulfite reductase alpha subunit flavoprotein |
|
_____________2________31\n_____________|________|\n5'-UUC...AACAG________ACUGG...UUG-3'\n______________CUUUGCUU\n______________|:||||||\n______________GGAACGAA\n3'-UUU...GUGGG________GUAG-5'\n_____________|________|\n_____________124______97\n |
176 -- 182 |
5 -- 11 |
-8.59037 kcal/mol |
0.881795 kcal/mol |
1.04254 kcal/mol |
2 31@LB@ | |@LB@5'-UUC...AACAG ACUGG...UUG-3'@LB@ CUUUGCUU@LB@ |:||||||@LB@ GGAACGAA@LB@3'-UUU...GUGGG GUAG-5'@LB@ | |@LB@ 124 97@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -8.59037 kcal/mol@LB@Unfolding Energy - mRNA 0.881795 kcal/mol@LB@Unfolding Energy - sRNA 1.04254 kcal/mol@LB@@LB@Position - mRNA 3 -- 30@LB@Position - sRNA 98 -- 123@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 5 -- 11@LB@ |