78 |
0.006706 |
0.2822 |
b3738 |
atpB |
-10.93 |
0.077303 |
188 -- 216 |
28 -- 54 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________187_____________________________217\n_____________|_______________________________|\n5'-CAU...CAAAG_____AAG___UC__________________UGACG...ACC-3'\n______________GGUAA___GCA__AUGGCUU__CAGAAAAUA\n______________||:||___|||__|||||::__|||||||||\n______________CCGUU___CGU__UACCGGG__GUCUUUUAU\n3'-UUU...AGUCA_____A______________UU_________UUUAG...UUG-5'\n_____________|_______________________________|\n_____________55______________________________27\n |
201 -- 207 |
39 -- 45 |
-24.7477 kcal/mol |
4.83623 kcal/mol |
8.98285 kcal/mol |
187 217@LB@ | |@LB@5'-CAU...CAAAG AAG UC UGACG...ACC-3'@LB@ GGUAA GCA AUGGCUU CAGAAAAUA@LB@ ||:|| ||| |||||:: |||||||||@LB@ CCGUU CGU UACCGGG GUCUUUUAU@LB@3'-UUU...AGUCA A UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -24.7477 kcal/mol@LB@Unfolding Energy - mRNA 4.83623 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 188 -- 216@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 39 -- 45@LB@ |
79 |
0.006804 |
0.2822 |
b2947 |
gshB |
-11.48 |
0.058268 |
213 -- 229 |
39 -- 54 |
glutathione synthetase |
|
_____________212_______________230\n_____________|_________________|\n5'-UGC...AGCUC____UC_______A___CAUCG...ACG-3'\n______________GGCA__GUGAUGG_CCC\n______________||||__|::||||_|||\n______________CCGU__CGUUACC_GGG\n3'-UUU...AGUCA____UA___________UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
219 -- 225 |
42 -- 48 |
-21.2333 kcal/mol |
4.99211 kcal/mol |
4.76022 kcal/mol |
212 230@LB@ | |@LB@5'-UGC...AGCUC UC A CAUCG...ACG-3'@LB@ GGCA GUGAUGG CCC@LB@ |||| |::|||| |||@LB@ CCGU CGUUACC GGG@LB@3'-UUU...AGUCA UA UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -21.2333 kcal/mol@LB@Unfolding Energy - mRNA 4.99211 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 213 -- 229@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 42 -- 48@LB@ |
80 |
0.006956 |
0.2822 |
b1914 |
uvrY |
-9.02 |
0.189987 |
260 -- 281 |
5 -- 24 |
response regulator in two-component regulatory system with BarA |
|
_____________259____________________282\n_____________|______________________|\n5'-UUC...CGCAU____GAA____UA_________AAAGU...CAU-3'\n______________UCUG___GAUA__AAGGGUAUA\n______________||||___||:|__||:||:|||\n______________AGAC___CUGU__UUUCCGUAU\n3'-UUU...AUUUU____A______UA_________AUUG-5'\n_____________|______________________|\n_____________25_____________________4\n |
275 -- 281 |
5 -- 11 |
-15.9126 kcal/mol |
2.27135 kcal/mol |
4.61703 kcal/mol |
259 282@LB@ | |@LB@5'-UUC...CGCAU GAA UA AAAGU...CAU-3'@LB@ UCUG GAUA AAGGGUAUA@LB@ |||| ||:| ||:||:|||@LB@ AGAC CUGU UUUCCGUAU@LB@3'-UUU...AUUUU A UA AUUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -15.9126 kcal/mol@LB@Unfolding Energy - mRNA 2.27135 kcal/mol@LB@Unfolding Energy - sRNA 4.61703 kcal/mol@LB@@LB@Position - mRNA 260 -- 281@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 5 -- 11@LB@ |
81 |
0.006985 |
0.2822 |
b0333 |
prpC |
-14.20 |
0.012743 |
251 -- 274 |
6 -- 28 |
2-methylcitrate synthase |
|
_____________250______________________275\n_____________|________________________|\n5'-ACU...CCGAA_____________CUUUCU_____UCCGG...GCA-3'\n______________AAAAUCUGUGGCA______GGCGU\n______________||||||||||:||______|||:|\n______________UUUUAGACACUGU______CCGUA\n3'-UUU...UUUUA_____________UAUUU______UAUUG-5'\n_____________|________________________|\n_____________29_______________________5\n |
257 -- 263 |
16 -- 22 |
-23.1913 kcal/mol |
4.0983 kcal/mol |
4.89176 kcal/mol |
250 275@LB@ | |@LB@5'-ACU...CCGAA CUUUCU UCCGG...GCA-3'@LB@ AAAAUCUGUGGCA GGCGU@LB@ ||||||||||:|| |||:|@LB@ UUUUAGACACUGU CCGUA@LB@3'-UUU...UUUUA UAUUU UAUUG-5'@LB@ | |@LB@ 29 5@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -23.1913 kcal/mol@LB@Unfolding Energy - mRNA 4.0983 kcal/mol@LB@Unfolding Energy - sRNA 4.89176 kcal/mol@LB@@LB@Position - mRNA 251 -- 274@LB@Position - sRNA 6 -- 28@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 16 -- 22@LB@ |
82 |
0.006986 |
0.2822 |
b3128 |
garD |
-14.80 |
0.008847 |
185 -- 224 |
15 -- 66 |
D-galactarate dehydrogenase |
|
_____________184__________________________________________________225\n_____________|____________________________________________________|\n5'-AUA...CUGGC________AUU_____________________UC__________A_______GAAAC...UGA-3'\n______________UGGAGAAU_____GCA___CAAUGGCC_AACA______GAAAUC___GACAA\n______________||||:|||_____|||___||||||||_||||______:|||||___|||||\n______________ACCUUUUA_____CGU___GUUACCGG_UUGU______UUUUAG___CUGUU\n3'-UUU...AUACA________GUCAC___UAC________G____CUUUUA______ACA_____AUUUC...UUG-5'\n_____________|____________________________________________________|\n_____________67___________________________________________________14\n |
200 -- 206 |
40 -- 46 |
-31.4715 kcal/mol |
5.54782 kcal/mol |
11.1209 kcal/mol |
184 225@LB@ | |@LB@5'-AUA...CUGGC AUU UC A GAAAC...UGA-3'@LB@ UGGAGAAU GCA CAAUGGCC AACA GAAAUC GACAA@LB@ ||||:||| ||| |||||||| |||| :||||| |||||@LB@ ACCUUUUA CGU GUUACCGG UUGU UUUUAG CUGUU@LB@3'-UUU...AUACA GUCAC UAC G CUUUUA ACA AUUUC...UUG-5'@LB@ | |@LB@ 67 14@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -31.4715 kcal/mol@LB@Unfolding Energy - mRNA 5.54782 kcal/mol@LB@Unfolding Energy - sRNA 11.1209 kcal/mol@LB@@LB@Position - mRNA 185 -- 224@LB@Position - sRNA 15 -- 66@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
83 |
0.007014 |
0.2822 |
b0815 |
opgE |
-11.11 |
0.070482 |
164 -- 204 |
2 -- 58 |
OPG biosynthetic transmembrane phosphoethanolamine transferase |
|
_____________163________________________________________________________205\n_____________|__________________________________________________________|\n5'-UUU...GACGC_____________C__________________________U_______U_________AUUUA...GCU-3'\n______________CAG_GGUAA_GCA_AUGGC_______________GUUUGU_ACGAUAG_GGCAUAUGA\n______________|||_||:||_|||_|||||_______________:|:|||_||:|||:_|||||||:|\n______________GUC_CCGUU_CGU_UACCG_______________UAGACA_UGUUAUU_CCGUAUAUU\n3'-UUU...UUUUA___A_____A_________GGUUGUCUUUUAUUU______C_______U_________G-5'\n_____________|__________________________________________________________|\n_____________59_________________________________________________________1\n |
197 -- 203 |
3 -- 9 |
-40.5172 kcal/mol |
17.2586 kcal/mol |
12.1475 kcal/mol |
163 205@LB@ | |@LB@5'-UUU...GACGC C U U AUUUA...GCU-3'@LB@ CAG GGUAA GCA AUGGC GUUUGU ACGAUAG GGCAUAUGA@LB@ ||| ||:|| ||| ||||| :|:||| ||:|||: |||||||:|@LB@ GUC CCGUU CGU UACCG UAGACA UGUUAUU CCGUAUAUU@LB@3'-UUU...UUUUA A A GGUUGUCUUUUAUUU C U G-5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -40.5172 kcal/mol@LB@Unfolding Energy - mRNA 17.2586 kcal/mol@LB@Unfolding Energy - sRNA 12.1475 kcal/mol@LB@@LB@Position - mRNA 164 -- 204@LB@Position - sRNA 2 -- 58@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |
84 |
0.00705 |
0.2822 |
b2341 |
fadJ |
-9.52 |
0.152421 |
171 -- 187 |
39 -- 55 |
enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________170_______________188\n_____________|_________________|\n5'-CAU...GGGCU_____CG__________UGGAG...CGG-3'\n______________UGGCG__GCAAUGGUUC\n______________||||:__|||||||::|\n______________ACCGU__CGUUACCGGG\n3'-UUU...UAGUC_____UA__________UUGUC...UUG-5'\n_____________|_________________|\n_____________56________________38\n |
181 -- 187 |
39 -- 45 |
-22.4983 kcal/mol |
8.21876 kcal/mol |
4.76312 kcal/mol |
170 188@LB@ | |@LB@5'-CAU...GGGCU CG UGGAG...CGG-3'@LB@ UGGCG GCAAUGGUUC@LB@ ||||: |||||||::|@LB@ ACCGU CGUUACCGGG@LB@3'-UUU...UAGUC UA UUGUC...UUG-5'@LB@ | |@LB@ 56 38@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -22.4983 kcal/mol@LB@Unfolding Energy - mRNA 8.21876 kcal/mol@LB@Unfolding Energy - sRNA 4.76312 kcal/mol@LB@@LB@Position - mRNA 171 -- 187@LB@Position - sRNA 39 -- 55@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 39 -- 45@LB@ |
85 |
0.007532 |
0.2889 |
b4252 |
tabA |
-7.64 |
0.334848 |
14 -- 22 |
41 -- 49 |
biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein |
|
_____________13________23\n_____________|_________|\n5'-UCU...ACAGC_________GGGGG...CAA-3'\n______________UGCAAUGGC\n______________|||||||||\n______________ACGUUACCG\n3'-UUU...CCGUU_________GGUUG...UUG-5'\n_____________|_________|\n_____________50________40\n |
16 -- 22 |
41 -- 47 |
-14.0816 kcal/mol |
4.16801 kcal/mol |
2.27678 kcal/mol |
13 23@LB@ | |@LB@5'-UCU...ACAGC GGGGG...CAA-3'@LB@ UGCAAUGGC@LB@ |||||||||@LB@ ACGUUACCG@LB@3'-UUU...CCGUU GGUUG...UUG-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -14.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.16801 kcal/mol@LB@Unfolding Energy - sRNA 2.27678 kcal/mol@LB@@LB@Position - mRNA 14 -- 22@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 41 -- 47@LB@ |
86 |
0.007534 |
0.2889 |
b0189 |
rof |
-5.95 |
0.582576 |
103 -- 121 |
40 -- 57 |
modulator of Rho-dependent transcription termination |
|
_____________102_________________122\n_____________|___________________|\n5'-AGG...UUGAA____CUG____A_______GCCGA...GCG-3'\n______________AGUG___AAUG_AAUGGCU\n______________||||___||||_||||||:\n______________UCAC___UUAC_UUACCGG\n3'-UUU...UUUAG____CG_____G_______GUUGU...UUG-5'\n_____________|___________________|\n_____________58__________________39\n |
115 -- 121 |
40 -- 46 |
-14.9441 kcal/mol |
3.94739 kcal/mol |
5.04912 kcal/mol |
102 122@LB@ | |@LB@5'-AGG...UUGAA CUG A GCCGA...GCG-3'@LB@ AGUG AAUG AAUGGCU@LB@ |||| |||| ||||||:@LB@ UCAC UUAC UUACCGG@LB@3'-UUU...UUUAG CG G GUUGU...UUG-5'@LB@ | |@LB@ 58 39@LB@@LB@@LB@Energy -5.95 kcal/mol@LB@Hybridization Energy -14.9441 kcal/mol@LB@Unfolding Energy - mRNA 3.94739 kcal/mol@LB@Unfolding Energy - sRNA 5.04912 kcal/mol@LB@@LB@Position - mRNA 103 -- 121@LB@Position - sRNA 40 -- 57@LB@Position Seed - mRNA 115 -- 121@LB@Position Seed - sRNA 40 -- 46@LB@ |
87 |
0.007653 |
0.2889 |
b1881 |
cheZ |
-13.56 |
0.018568 |
164 -- 190 |
2 -- 28 |
chemotaxis regulator protein phosphatase for CheY |
|
_____________163_________________________191\n_____________|___________________________|\n5'-AUU...UCAAC_______U___G__ACU__________GGAUG...GGG-3'\n______________AAAAUCU_UGA_AA___GGGCAUGUGA\n______________|||||||_|||_||___:|||||:|:|\n______________UUUUAGA_ACU_UU___UCCGUAUAUU\n3'-UUU...UUUUA_______C___G__AUU__________G-5'\n_____________|___________________________|\n_____________29__________________________1\n |
183 -- 189 |
3 -- 9 |
-22.696 kcal/mol |
4.24203 kcal/mol |
4.89261 kcal/mol |
163 191@LB@ | |@LB@5'-AUU...UCAAC U G ACU GGAUG...GGG-3'@LB@ AAAAUCU UGA AA GGGCAUGUGA@LB@ ||||||| ||| || :|||||:|:|@LB@ UUUUAGA ACU UU UCCGUAUAUU@LB@3'-UUU...UUUUA C G AUU G-5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -22.696 kcal/mol@LB@Unfolding Energy - mRNA 4.24203 kcal/mol@LB@Unfolding Energy - sRNA 4.89261 kcal/mol@LB@@LB@Position - mRNA 164 -- 190@LB@Position - sRNA 2 -- 28@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 3 -- 9@LB@ |