7 |
0.0002249 |
0.1081 |
b4032 |
malG |
-16.06 |
0.003987 |
187 -- 221 |
31 -- 65 |
maltose transporter subunit |
|
_____________186_________________________________222\n_____________|___________________________________|\n5'-CGU...AUUAA_______AACAAAAAUG_____________C____UCGCA...UGG-3'\n______________GGGAGAU__________GCAAUGGUCCAAC_GAAA\n______________||:|:||__________|||||||:|||||_||||\n______________CCUUUUA__________CGUUACCGGGUUG_CUUU\n3'-UUU...UACAA_______GUCACCGUUA_____________U____UAUUU...UUG-5'\n_____________|___________________________________|\n_____________66__________________________________30\n |
210 -- 216 |
36 -- 42 |
-33.4232 kcal/mol |
6.39587 kcal/mol |
10.9697 kcal/mol |
186 222@LB@ | |@LB@5'-CGU...AUUAA AACAAAAAUG C UCGCA...UGG-3'@LB@ GGGAGAU GCAAUGGUCCAAC GAAA@LB@ ||:|:|| |||||||:||||| ||||@LB@ CCUUUUA CGUUACCGGGUUG CUUU@LB@3'-UUU...UACAA GUCACCGUUA U UAUUU...UUG-5'@LB@ | |@LB@ 66 30@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -33.4232 kcal/mol@LB@Unfolding Energy - mRNA 6.39587 kcal/mol@LB@Unfolding Energy - sRNA 10.9697 kcal/mol@LB@@LB@Position - mRNA 187 -- 221@LB@Position - sRNA 31 -- 65@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 36 -- 42@LB@ |
8 |
0.0003008 |
0.1262 |
b3191 |
mlaB |
-9.66 |
0.142648 |
16 -- 23 |
51 -- 58 |
ABC transporter maintaining OM lipid asymmetry cytoplasmic STAS component |
|
_____________15_______24\n_____________|________|\n5'-GUG...ACUUC________UAAAA...AGG-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
17 -- 23 |
51 -- 57 |
-13.9143 kcal/mol |
1.55672 kcal/mol |
2.69685 kcal/mol |
15 24@LB@ | |@LB@5'-GUG...ACUUC UAAAA...AGG-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -13.9143 kcal/mol@LB@Unfolding Energy - mRNA 1.55672 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 16 -- 23@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 51 -- 57@LB@ |
9 |
0.0003848 |
0.1262 |
b2708 |
srlQ |
-10.45 |
0.097910 |
5 -- 28 |
40 -- 60 |
D-arabinose 5-phosphate isomerase |
|
_____________4_________________________29\n_____________|_________________________|\n_______5'-UACC______AA____AU___________GCGCG...GCG-3'\n______________GUCAGU__GGCA__GUGCAAUG_CC\n______________:|||||__||||__:|||||||_||\n______________UAGUCA__CCGU__UACGUUAC_GG\n3'-UUU...CCUUU______________________C__GUUGU...UUG-5'\n_____________|_________________________|\n_____________61________________________39\n |
20 -- 26 |
43 -- 49 |
-23.8159 kcal/mol |
7.25851 kcal/mol |
6.10522 kcal/mol |
4 29@LB@ | |@LB@ 5'-UACC AA AU GCGCG...GCG-3'@LB@ GUCAGU GGCA GUGCAAUG CC@LB@ :||||| |||| :||||||| ||@LB@ UAGUCA CCGU UACGUUAC GG@LB@3'-UUU...CCUUU C GUUGU...UUG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -10.45 kcal/mol@LB@Hybridization Energy -23.8159 kcal/mol@LB@Unfolding Energy - mRNA 7.25851 kcal/mol@LB@Unfolding Energy - sRNA 6.10522 kcal/mol@LB@@LB@Position - mRNA 5 -- 28@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 43 -- 49@LB@ |
10 |
0.0004066 |
0.1262 |
b3429 |
glgA |
-9.74 |
0.137242 |
173 -- 185 |
51 -- 64 |
glycogen synthase |
|
_____________172____________186\n_____________|______________|\n5'-GUA...GCUAC______________UAAAC...ACG-3'\n______________GGAAGUUAG_GGCA\n______________|:||:|:||_||||\n______________CUUUUAGUC_CCGU\n3'-UUU...ACAAC_________A____UACGU...UUG-5'\n_____________|______________|\n_____________65_____________50\n |
175 -- 181 |
56 -- 62 |
-15.3924 kcal/mol |
2.76007 kcal/mol |
2.8882 kcal/mol |
172 186@LB@ | |@LB@5'-GUA...GCUAC UAAAC...ACG-3'@LB@ GGAAGUUAG GGCA@LB@ |:||:|:|| ||||@LB@ CUUUUAGUC CCGU@LB@3'-UUU...ACAAC A UACGU...UUG-5'@LB@ | |@LB@ 65 50@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -15.3924 kcal/mol@LB@Unfolding Energy - mRNA 2.76007 kcal/mol@LB@Unfolding Energy - sRNA 2.8882 kcal/mol@LB@@LB@Position - mRNA 173 -- 185@LB@Position - sRNA 51 -- 64@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 56 -- 62@LB@ |
11 |
0.000438 |
0.1262 |
b0467 |
priC |
-14.72 |
0.009297 |
1 -- 37 |
32 -- 65 |
primosomal replication protein N'' |
|
______________1____________________________________38\n______________|____________________________________|\n___________5'-______GAACG_____A___CCA___CG_________UAAAC...GUU-3'\n______________GGGGAA_____GGCAA_GCA___GGC__CCAGCAGGA\n______________||::||_____|||||_|||___|||__|||:|||:|\n______________CCUUUU_____CCGUU_CGU___CCG__GGUUGUCUU\n3'-UUU...UACAA______AGUCA_____A___UA_______________UUAUU...UUG-5'\n_____________|_____________________________________|\n_____________66____________________________________31\n |
30 -- 36 |
33 -- 39 |
-34.0772 kcal/mol |
8.3902 kcal/mol |
10.9649 kcal/mol |
1 38@LB@ | |@LB@ 5'- GAACG A CCA CG UAAAC...GUU-3'@LB@ GGGGAA GGCAA GCA GGC CCAGCAGGA@LB@ ||::|| ||||| ||| ||| |||:|||:|@LB@ CCUUUU CCGUU CGU CCG GGUUGUCUU@LB@3'-UUU...UACAA AGUCA A UA UUAUU...UUG-5'@LB@ | |@LB@ 66 31@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -34.0772 kcal/mol@LB@Unfolding Energy - mRNA 8.3902 kcal/mol@LB@Unfolding Energy - sRNA 10.9649 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 32 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 33 -- 39@LB@ |
12 |
0.0004505 |
0.1262 |
b3248 |
yhdE |
-11.12 |
0.070056 |
184 -- 205 |
1 -- 21 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________183_____________________206\n_____________|_______________________|\n5'-UUA...UUGCA______________UUC______UUCUC...AGC-3'\n______________GUG_CAAUAAAGGU___UAUGAC\n______________|||_|||||||||:___|||:||\n______________CAC_GUUAUUUCCG___AUAUUG\n3'-UUU...UUAGA___U__________U________-5'\n_____________|______________________|\n_____________22_____________________1\n |
190 -- 196 |
8 -- 14 |
-19.9684 kcal/mol |
4.43203 kcal/mol |
4.41334 kcal/mol |
183 206@LB@ | |@LB@5'-UUA...UUGCA UUC UUCUC...AGC-3'@LB@ GUG CAAUAAAGGU UAUGAC@LB@ ||| |||||||||: |||:||@LB@ CAC GUUAUUUCCG AUAUUG@LB@3'-UUU...UUAGA U U -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -19.9684 kcal/mol@LB@Unfolding Energy - mRNA 4.43203 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 184 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 8 -- 14@LB@ |
13 |
0.0005138 |
0.1268 |
b0055 |
djlA |
-16.40 |
0.003186 |
213 -- 240 |
39 -- 65 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________212__________________________241\n_____________|____________________________|\n5'-GAC...AUUGG__A_______U_____UG__C_______UACUG...UUG-3'\n______________GG_AAAAUCA_UGGCG__GC_GUGGCCU\n______________||_|||||||_||||:__||_:|||||:\n______________CC_UUUUAGU_ACCGU__CG_UACCGGG\n3'-UUU...UACAA__________C_____UA__U_______UUGUC...UUG-5'\n_____________|____________________________|\n_____________66___________________________38\n |
234 -- 240 |
39 -- 45 |
-30.8595 kcal/mol |
7.7929 kcal/mol |
6.66922 kcal/mol |
212 241@LB@ | |@LB@5'-GAC...AUUGG A U UG C UACUG...UUG-3'@LB@ GG AAAAUCA UGGCG GC GUGGCCU@LB@ || ||||||| ||||: || :|||||:@LB@ CC UUUUAGU ACCGU CG UACCGGG@LB@3'-UUU...UACAA C UA U UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 7.7929 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 213 -- 240@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 39 -- 45@LB@ |
14 |
0.0005336 |
0.1268 |
b0178 |
skp |
-14.43 |
0.011083 |
94 -- 112 |
46 -- 65 |
periplasmic chaperone |
|
_____________93___________________113\n_____________|____________________|\n5'-CUC...ACAAA____UG______________GCGAU...UCC-3'\n______________GGAA___UAGUGGUAGUGUA\n______________||||___:|||||:|:||:|\n______________CCUU___GUCACCGUUACGU\n3'-UUU...UACAA____UUA_____________UACCG...UUG-5'\n_____________|____________________|\n_____________66___________________45\n |
105 -- 111 |
47 -- 53 |
-21.6303 kcal/mol |
3.11688 kcal/mol |
4.07994 kcal/mol |
93 113@LB@ | |@LB@5'-CUC...ACAAA UG GCGAU...UCC-3'@LB@ GGAA UAGUGGUAGUGUA@LB@ |||| :|||||:|:||:|@LB@ CCUU GUCACCGUUACGU@LB@3'-UUU...UACAA UUA UACCG...UUG-5'@LB@ | |@LB@ 66 45@LB@@LB@@LB@Energy -14.43 kcal/mol@LB@Hybridization Energy -21.6303 kcal/mol@LB@Unfolding Energy - mRNA 3.11688 kcal/mol@LB@Unfolding Energy - sRNA 4.07994 kcal/mol@LB@@LB@Position - mRNA 94 -- 112@LB@Position - sRNA 46 -- 65@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 47 -- 53@LB@ |
15 |
0.0005657 |
0.1268 |
b3715 |
yieH |
-7.91 |
0.301098 |
195 -- 204 |
4 -- 13 |
phosphoenolpyruvate and 6-phosphogluconate phosphatase |
|
_____________194________205\n_____________|__________|\n5'-CUG...AAAGG__________CCCGG...UUG-3'\n______________AAAGGCAUGU\n______________||||||||:|\n______________UUUCCGUAUA\n3'-UUU...UGUUA__________UUG-5'\n_____________|__________|\n_____________14_________3\n |
198 -- 204 |
4 -- 10 |
-12.382 kcal/mol |
1.66065 kcal/mol |
2.80714 kcal/mol |
194 205@LB@ | |@LB@5'-CUG...AAAGG CCCGG...UUG-3'@LB@ AAAGGCAUGU@LB@ ||||||||:|@LB@ UUUCCGUAUA@LB@3'-UUU...UGUUA UUG-5'@LB@ | |@LB@ 14 3@LB@@LB@@LB@Energy -7.91 kcal/mol@LB@Hybridization Energy -12.382 kcal/mol@LB@Unfolding Energy - mRNA 1.66065 kcal/mol@LB@Unfolding Energy - sRNA 2.80714 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 4 -- 13@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 4 -- 10@LB@ |
16 |
0.0007379 |
0.1438 |
b3838 |
tatB |
-12.16 |
0.040760 |
131 -- 190 |
7 -- 68 |
TatABCE protein translocation system subunit |
|
_____________130___________________________________________________________________191\n_____________|_____________________________________________________________________|\n5'-UCG...AAGCA_GC___UAC_______GAA_____________AA_________CGC______GCC__________A___GGUGU...CGG-3'\n______________G__GGA___GAAUCAG___CA_______GGCU__AACAGAAGA___GAAG_C____ACGAUAAAG_GCA\n______________|__|||___:||||||___||_______|||:__|||||||:|___:||:_|____||:||||||_|||\n______________C__CCU___UUUAGUC___GU_______CCGG__UUGUCUUUU___UUUU_G____UGUUAUUUC_CGU\n3'-UUU...AUAUA_AA_____________ACC__UACGUUA____G__________A______A_ACAC_____________AUAUUG-5'\n_____________|_____________________________________________________________________|\n_____________69____________________________________________________________________6\n |
180 -- 186 |
10 -- 16 |
-35.021 kcal/mol |
10.7079 kcal/mol |
12.1575 kcal/mol |
130 191@LB@ | |@LB@5'-UCG...AAGCA GC UAC GAA AA CGC GCC A GGUGU...CGG-3'@LB@ G GGA GAAUCAG CA GGCU AACAGAAGA GAAG C ACGAUAAAG GCA@LB@ | ||| :|||||| || |||: |||||||:| :||: | ||:|||||| |||@LB@ C CCU UUUAGUC GU CCGG UUGUCUUUU UUUU G UGUUAUUUC CGU@LB@3'-UUU...AUAUA AA ACC UACGUUA G A A ACAC AUAUUG-5'@LB@ | |@LB@ 69 6@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -35.021 kcal/mol@LB@Unfolding Energy - mRNA 10.7079 kcal/mol@LB@Unfolding Energy - sRNA 12.1575 kcal/mol@LB@@LB@Position - mRNA 131 -- 190@LB@Position - sRNA 7 -- 68@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 10 -- 16@LB@ |