| 108 |
0.01004 |
0.3126 |
b2422 |
cysA |
-10.23 |
0.108830 |
144 -- 158 |
52 -- 72 |
sulfate/thiosulfate transporter subunit |
|
_____________143___________________159\n_____________|_____________________|\n5'-GGU...AAAAA_____________________GCCUG...UGC-3'\n______________GUAUGUUG______CAGUGGC\n______________:|||||||______|||||||\n______________UAUACAAC______GUCACCG\n3'-UUU...AAAAA________CUUUUA_______UUACG...UUG-5'\n_____________|_____________________|\n_____________73____________________51\n |
152 -- 158 |
52 -- 58 |
-18.4697 kcal/mol |
5.08596 kcal/mol |
3.1495 kcal/mol |
143 159@LB@ | |@LB@5'-GGU...AAAAA GCCUG...UGC-3'@LB@ GUAUGUUG CAGUGGC@LB@ :||||||| |||||||@LB@ UAUACAAC GUCACCG@LB@3'-UUU...AAAAA CUUUUA UUACG...UUG-5'@LB@ | |@LB@ 73 51@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -18.4697 kcal/mol@LB@Unfolding Energy - mRNA 5.08596 kcal/mol@LB@Unfolding Energy - sRNA 3.1495 kcal/mol@LB@@LB@Position - mRNA 144 -- 158@LB@Position - sRNA 52 -- 72@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 109 |
0.01013 |
0.3127 |
b3805 |
hemC |
-12.29 |
0.037947 |
146 -- 209 |
1 -- 60 |
hydroxymethylbilane synthase |
|
_____________145_____________________________________________________________________210\n_____________|_______________________________________________________________________|\n5'-AAA...CUGAC____CUC_____AGG____UAG_____A________U____________________CAA______UA___AAUGU...GCC-3'\n______________AUCA___UGGCA___AUGU___GAUGG_CC_ACGGA_GAUAA______UGACGGUAA___GCAUGU__GAC\n______________||||___|||||___|||:___:||||_||_||:||_:||||______||||::|||___||||:|__:||\n______________UAGU___ACCGU___UACG___UUACC_GG_UGUCU_UUAUU______ACUGUUAUU___CGUAUA__UUG\n3'-UUU...CCUUU____C______________________G__U_____U_____UUAGAC_________UC____________-5'\n_____________|______________________________________________________________________|\n_____________61_____________________________________________________________________1\n |
189 -- 195 |
12 -- 18 |
-39.6606 kcal/mol |
15.2176 kcal/mol |
12.1554 kcal/mol |
145 210@LB@ | |@LB@5'-AAA...CUGAC CUC AGG UAG A U CAA UA AAUGU...GCC-3'@LB@ AUCA UGGCA AUGU GAUGG CC ACGGA GAUAA UGACGGUAA GCAUGU GAC@LB@ |||| ||||| |||: :|||| || ||:|| :|||| ||||::||| ||||:| :||@LB@ UAGU ACCGU UACG UUACC GG UGUCU UUAUU ACUGUUAUU CGUAUA UUG@LB@3'-UUU...CCUUU C G U U UUAGAC UC -5'@LB@ | |@LB@ 61 1@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -39.6606 kcal/mol@LB@Unfolding Energy - mRNA 15.2176 kcal/mol@LB@Unfolding Energy - sRNA 12.1554 kcal/mol@LB@@LB@Position - mRNA 146 -- 209@LB@Position - sRNA 1 -- 60@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 110 |
0.01026 |
0.313 |
b0063 |
araB |
-12.48 |
0.034183 |
202 -- 260 |
1 -- 55 |
L-ribulokinase |
|
_____________201___________________________________________________________261\n_____________|_____________________________________________________________|\n5'-CGG...AACGA_______U____U_____U____UUU__C_____U___________GCUUU____GUG___UGCGC...GGU-3'\n______________UGGCGAU_GCAA_UGGCC_CGAU___GG_AGUGA__UCUGUG_CGA_____GGCG___GAC\n______________||||:||_||||_|||||_|:|:___|:_|:|:|__||||||_|:|_____|||:___:||\n______________ACCGUUA_CGUU_ACCGG_GUUG___CU_UUAUU__AGACAC_GUU_____CCGU___UUG\n3'-UUU...UAGUC_______________________U____U_____UU______U___AUUU_____AUA___-5'\n_____________|____________________________________________________________|\n_____________56___________________________________________________________1\n |
202 -- 208 |
49 -- 55 |
-46.0779 kcal/mol |
21.5533 kcal/mol |
12.0455 kcal/mol |
201 261@LB@ | |@LB@5'-CGG...AACGA U U U UUU C U GCUUU GUG UGCGC...GGU-3'@LB@ UGGCGAU GCAA UGGCC CGAU GG AGUGA UCUGUG CGA GGCG GAC@LB@ ||||:|| |||| ||||| |:|: |: |:|:| |||||| |:| |||: :||@LB@ ACCGUUA CGUU ACCGG GUUG CU UUAUU AGACAC GUU CCGU UUG@LB@3'-UUU...UAGUC U U UU U AUUU AUA -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -46.0779 kcal/mol@LB@Unfolding Energy - mRNA 21.5533 kcal/mol@LB@Unfolding Energy - sRNA 12.0455 kcal/mol@LB@@LB@Position - mRNA 202 -- 260@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 111 |
0.01033 |
0.313 |
b1120 |
cobB |
-14.51 |
0.010573 |
178 -- 236 |
7 -- 64 |
deacetylase of acs and cheY chemotaxis regulator |
|
_____________177______________________________________________________________237\n_____________|________________________________________________________________|\n5'-CGC...UUUCA____UAA______GCCG__A_______AAA___CA______C____GUAC______________GGAAU...AUC-3'\n______________GAGA___AGUGGU____GA_GCAAUGG___AAC__AGAGUA___UC____UGACAG___GGGCA\n______________||:|___|||||:____:|_|||||||___|||__|:|:||___||____|||||:___:||||\n______________CUUU___UCACCG____UU_CGUUACC___UUG__UUUUAU___AG____ACUGUU___UCCGU\n3'-UUU...ACAAC____UAG____________A_______GGG___UC______UUU__AC________AUU_____AUAUUG-5'\n_____________|________________________________________________________________|\n_____________65_______________________________________________________________6\n |
198 -- 204 |
42 -- 48 |
-37.7371 kcal/mol |
11.0723 kcal/mol |
12.1536 kcal/mol |
177 237@LB@ | |@LB@5'-CGC...UUUCA UAA GCCG A AAA CA C GUAC GGAAU...AUC-3'@LB@ GAGA AGUGGU GA GCAAUGG AAC AGAGUA UC UGACAG GGGCA@LB@ ||:| |||||: :| ||||||| ||| |:|:|| || |||||: :||||@LB@ CUUU UCACCG UU CGUUACC UUG UUUUAU AG ACUGUU UCCGU@LB@3'-UUU...ACAAC UAG A GGG UC UUU AC AUU AUAUUG-5'@LB@ | |@LB@ 65 6@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -37.7371 kcal/mol@LB@Unfolding Energy - mRNA 11.0723 kcal/mol@LB@Unfolding Energy - sRNA 12.1536 kcal/mol@LB@@LB@Position - mRNA 178 -- 236@LB@Position - sRNA 7 -- 64@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 112 |
0.0105 |
0.3154 |
b2136 |
yohD |
-14.01 |
0.014269 |
227 -- 295 |
6 -- 72 |
DedA family inner membrane protein |
|
_____________226_____________________________________________________________________296\n_____________|_______________________________________________________________________|\n5'-GAU...UCACA_____GUUAUGCCG__C____________A____________________C_____UUUGCUG________UGCGG-3'\n______________AUAUG_________CG_UGGUGAU_CGGU_GCCUGGCGGAAGGUGAAA_C_GUGAC_______GGAGGCGU\n______________|||||_________|:_|||::||_|::|_|||:::|:|||::|:|||_|_|||||_______::||||:|\n______________UAUAC_________GU_ACCGUUA_GUUA_CGGGUUGUCUUUUAUUUU_G_CACUG_______UUUCCGUA\n3'-UUU...AAAAA_____AACCUUUUA__C_______C____C__________________A_A_____UUA____________UAUUG-5'\n_____________|_______________________________________________________________________|\n_____________73______________________________________________________________________5\n |
289 -- 295 |
6 -- 12 |
-51.7055 kcal/mol |
25.533 kcal/mol |
12.1614 kcal/mol |
226 296@LB@ | |@LB@5'-GAU...UCACA GUUAUGCCG C A C UUUGCUG UGCGG-3'@LB@ AUAUG CG UGGUGAU CGGU GCCUGGCGGAAGGUGAAA C GUGAC GGAGGCGU@LB@ ||||| |: |||::|| |::| |||:::|:|||::|:||| | ||||| ::||||:|@LB@ UAUAC GU ACCGUUA GUUA CGGGUUGUCUUUUAUUUU G CACUG UUUCCGUA@LB@3'-UUU...AAAAA AACCUUUUA C C C A A UUA UAUUG-5'@LB@ | |@LB@ 73 5@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -51.7055 kcal/mol@LB@Unfolding Energy - mRNA 25.533 kcal/mol@LB@Unfolding Energy - sRNA 12.1614 kcal/mol@LB@@LB@Position - mRNA 227 -- 295@LB@Position - sRNA 6 -- 72@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 113 |
0.01136 |
0.3326 |
b3417 |
malP |
-12.46 |
0.034450 |
250 -- 272 |
38 -- 60 |
maltodextrin phosphorylase |
|
_____________249_____________________273\n_____________|_______________________|\n5'-ACA...UUCAC___________C__U________AAUUC...GCC-3'\n______________GUCAGUGGCAG_GU_AUGGCUUA\n______________:|||||||||:_|:_|||||::|\n______________UAGUCACCGUU_CG_UACCGGGU\n3'-UUU...CCUUU___________A__U________UGUCU...UUG-5'\n_____________|_______________________|\n_____________61______________________37\n |
266 -- 272 |
38 -- 44 |
-30.8718 kcal/mol |
11.793 kcal/mol |
6.61394 kcal/mol |
249 273@LB@ | |@LB@5'-ACA...UUCAC C U AAUUC...GCC-3'@LB@ GUCAGUGGCAG GU AUGGCUUA@LB@ :|||||||||: |: |||||::|@LB@ UAGUCACCGUU CG UACCGGGU@LB@3'-UUU...CCUUU A U UGUCU...UUG-5'@LB@ | |@LB@ 61 37@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -30.8718 kcal/mol@LB@Unfolding Energy - mRNA 11.793 kcal/mol@LB@Unfolding Energy - sRNA 6.61394 kcal/mol@LB@@LB@Position - mRNA 250 -- 272@LB@Position - sRNA 38 -- 60@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 114 |
0.01136 |
0.3326 |
b2203 |
napB |
-12.98 |
0.025868 |
242 -- 255 |
39 -- 54 |
nitrate reductase small cytochrome C550 subunit periplasmic |
|
_____________241______________256\n_____________|________________|\n5'-ACC...UGGAC________________UGGUG...UUA-3'\n______________GGCGAUGC__UGGCCC\n______________|||:||||__||||||\n______________CCGUUACG__ACCGGG\n3'-UUU...AGUCA________UU______UUGUC...UUG-5'\n_____________|________________|\n_____________55_______________38\n |
243 -- 249 |
47 -- 53 |
-25.1467 kcal/mol |
7.40583 kcal/mol |
4.76022 kcal/mol |
241 256@LB@ | |@LB@5'-ACC...UGGAC UGGUG...UUA-3'@LB@ GGCGAUGC UGGCCC@LB@ |||:|||| ||||||@LB@ CCGUUACG ACCGGG@LB@3'-UUU...AGUCA UU UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -25.1467 kcal/mol@LB@Unfolding Energy - mRNA 7.40583 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 115 |
0.0114 |
0.3326 |
b2531 |
iscR |
-8.61 |
0.227442 |
42 -- 64 |
8 -- 31 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________41_______________________65\n_____________|________________________|\n5'-AUG...GCCAC_______AAA______C_______UAAAU...AAC-3'\n______________GAUAAAA____UGGCA_UGAAGGU\n______________:||||||____||:||_|:||||:\n______________UUAUUUU____ACUGU_AUUUCCG\n3'-UUU...GUCUU_______AGAC_____U_______UAUAUUG-5'\n_____________|________________________|\n_____________32_______________________7\n |
58 -- 64 |
8 -- 14 |
-15.5579 kcal/mol |
1.96266 kcal/mol |
4.98963 kcal/mol |
41 65@LB@ | |@LB@5'-AUG...GCCAC AAA C UAAAU...AAC-3'@LB@ GAUAAAA UGGCA UGAAGGU@LB@ :|||||| ||:|| |:||||:@LB@ UUAUUUU ACUGU AUUUCCG@LB@3'-UUU...GUCUU AGAC U UAUAUUG-5'@LB@ | |@LB@ 32 7@LB@@LB@@LB@Energy -8.61 kcal/mol@LB@Hybridization Energy -15.5579 kcal/mol@LB@Unfolding Energy - mRNA 1.96266 kcal/mol@LB@Unfolding Energy - sRNA 4.98963 kcal/mol@LB@@LB@Position - mRNA 42 -- 64@LB@Position - sRNA 8 -- 31@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 116 |
0.0115 |
0.3326 |
b3770 |
ilvE |
-6.73 |
0.460342 |
227 -- 277 |
1 -- 67 |
branched-chain amino acid aminotransferase |
|
_____________226__________________________________________________________________278\n_____________|____________________________________________________________________|\n5'-UUU...UACAU____U______A___G______________C_____________________CG____U_________GUCGC...GCA-3'\n______________UUGG____UCA_UGG_GA___GAUGGUUCG_UGGGAA___________GACG__AAGG_GCAUGUGAU\n______________||||____|||_|||_:|___:||||::|:_::|:||___________|||:__||:|_||||:|:|:\n______________AACC____AGU_ACC_UU___UUACCGGGU_GUCUUU___________CUGU__UUUC_CGUAUAUUG\n3'-UUU...UAUAC____UUUU___C___G__ACG_________U______UAUUUUAGACA____UA______________-5'\n_____________|___________________________________________________________________|\n_____________68__________________________________________________________________1\n |
269 -- 275 |
3 -- 9 |
-35.2937 kcal/mol |
16.4013 kcal/mol |
12.1612 kcal/mol |
226 278@LB@ | |@LB@5'-UUU...UACAU U A G C CG U GUCGC...GCA-3'@LB@ UUGG UCA UGG GA GAUGGUUCG UGGGAA GACG AAGG GCAUGUGAU@LB@ |||| ||| ||| :| :||||::|: ::|:|| |||: ||:| ||||:|:|:@LB@ AACC AGU ACC UU UUACCGGGU GUCUUU CUGU UUUC CGUAUAUUG@LB@3'-UUU...UAUAC UUUU C G ACG U UAUUUUAGACA UA -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -6.73 kcal/mol@LB@Hybridization Energy -35.2937 kcal/mol@LB@Unfolding Energy - mRNA 16.4013 kcal/mol@LB@Unfolding Energy - sRNA 12.1612 kcal/mol@LB@@LB@Position - mRNA 227 -- 277@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 117 |
0.01164 |
0.3326 |
b1119 |
nagK |
-13.64 |
0.017780 |
246 -- 275 |
42 -- 70 |
N-acetyl-D-glucosamine kinase |
|
_____________245_____________________________276\n_____________|_______________________________|\n5'-UCA...UUGGC_____U__UAG_____C_____U________GAAAA...GUG-3'\n______________GUGUU_GA____CGGU_GGCAG_UGCAGUGG\n______________:||||_||____|:||_||||:_||||:|||\n______________UACAA_CU____GUCA_CCGUU_ACGUUACC\n3'-UUU...AAAUA_____C__UUUA___________________GGGUU...UUG-5'\n_____________|_______________________________|\n_____________71______________________________41\n |
269 -- 275 |
42 -- 48 |
-28.344 kcal/mol |
8.3584 kcal/mol |
6.34928 kcal/mol |
245 276@LB@ | |@LB@5'-UCA...UUGGC U UAG C U GAAAA...GUG-3'@LB@ GUGUU GA CGGU GGCAG UGCAGUGG@LB@ :|||| || |:|| ||||: ||||:|||@LB@ UACAA CU GUCA CCGUU ACGUUACC@LB@3'-UUU...AAAUA C UUUA GGGUU...UUG-5'@LB@ | |@LB@ 71 41@LB@@LB@@LB@Energy -13.64 kcal/mol@LB@Hybridization Energy -28.344 kcal/mol@LB@Unfolding Energy - mRNA 8.3584 kcal/mol@LB@Unfolding Energy - sRNA 6.34928 kcal/mol@LB@@LB@Position - mRNA 246 -- 275@LB@Position - sRNA 42 -- 70@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 42 -- 48@LB@ |
