17 |
0.0007572 |
0.1438 |
b2512 |
bamB |
-10.25 |
0.108120 |
60 -- 97 |
8 -- 56 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________59________________________________________________98\n_____________|_________________________________________________|\n5'-GCU...CCUGC_______A___U_____G____AAG_________________GC_____GCGCG...CCC-3'\n______________GUGGUGA_GCA_U_GCU_AGCA_____________GUGAUAA__AAGGU\n______________||||::|_|||_|_||:_|:||_____________||||:||__||||:\n______________CACCGUU_CGU_A_CGG_UUGU_____________CACUGUU__UUCCG\n3'-UUU...UUAGU_______A___U_C___G____CUUUUAUUUUAGA_______AU_____UAUAUUG-5'\n_____________|_________________________________________________|\n_____________57________________________________________________7\n |
84 -- 90 |
15 -- 21 |
-31.6141 kcal/mol |
9.34469 kcal/mol |
12.0216 kcal/mol |
59 98@LB@ | |@LB@5'-GCU...CCUGC A U G AAG GC GCGCG...CCC-3'@LB@ GUGGUGA GCA U GCU AGCA GUGAUAA AAGGU@LB@ ||||::| ||| | ||: |:|| ||||:|| ||||:@LB@ CACCGUU CGU A CGG UUGU CACUGUU UUCCG@LB@3'-UUU...UUAGU A U C G CUUUUAUUUUAGA AU UAUAUUG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -31.6141 kcal/mol@LB@Unfolding Energy - mRNA 9.34469 kcal/mol@LB@Unfolding Energy - sRNA 12.0216 kcal/mol@LB@@LB@Position - mRNA 60 -- 97@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 15 -- 21@LB@ |
18 |
0.0007704 |
0.1438 |
b4526 |
ydaE |
-7.35 |
0.372707 |
186 -- 222 |
21 -- 54 |
conserved protein Rac prophage |
|
_____________185___________________________________223\n_____________|_____________________________________|\n5'-ACU...GUAAA_____A__C_____GA____UA____________G__CUUAC...UAU-3'\n______________GGCGG_GU_AUGGU__UGAC__AGAAAAUAAAAU_UG\n______________|||::_|:_||||:__::||__||||||||||||_||\n______________CCGUU_CG_UACCG__GUUG__UCUUUUAUUUUA_AC\n3'-UUU...AGUCA_____A__U_____G___________________G__ACUGU...UUG-5'\n_____________|_____________________________________|\n_____________55____________________________________20\n |
212 -- 218 |
25 -- 31 |
-28.7009 kcal/mol |
12.2907 kcal/mol |
9.06413 kcal/mol |
185 223@LB@ | |@LB@5'-ACU...GUAAA A C GA UA G CUUAC...UAU-3'@LB@ GGCGG GU AUGGU UGAC AGAAAAUAAAAU UG@LB@ |||:: |: ||||: ::|| |||||||||||| ||@LB@ CCGUU CG UACCG GUUG UCUUUUAUUUUA AC@LB@3'-UUU...AGUCA A U G G ACUGU...UUG-5'@LB@ | |@LB@ 55 20@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -28.7009 kcal/mol@LB@Unfolding Energy - mRNA 12.2907 kcal/mol@LB@Unfolding Energy - sRNA 9.06413 kcal/mol@LB@@LB@Position - mRNA 186 -- 222@LB@Position - sRNA 21 -- 54@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 25 -- 31@LB@ |
19 |
0.0008126 |
0.1438 |
b1205 |
ychH |
-14.60 |
0.010030 |
245 -- 269 |
40 -- 68 |
DUF2583 family putative inner membrane protein |
|
_____________244____________________________270\n_____________|______________________________|\n5'-CAA...AUGGG___________U__________________GGCGU...UAC-3'\n______________GUUGG___GUC_GGUGGUAAUG__GUGGUC\n______________|||||___:||_:||||:||||__:|||:|\n______________CAACC___UAG_UCACCGUUAC__UACCGG\n3'-UUU...AUAUA_____UUU______________GU______GUUGU...UUG-5'\n_____________|______________________________|\n_____________69_____________________________39\n |
257 -- 263 |
48 -- 54 |
-27.4871 kcal/mol |
6.07036 kcal/mol |
6.81885 kcal/mol |
244 270@LB@ | |@LB@5'-CAA...AUGGG U GGCGU...UAC-3'@LB@ GUUGG GUC GGUGGUAAUG GUGGUC@LB@ ||||| :|| :||||:|||| :|||:|@LB@ CAACC UAG UCACCGUUAC UACCGG@LB@3'-UUU...AUAUA UUU GU GUUGU...UUG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -14.60 kcal/mol@LB@Hybridization Energy -27.4871 kcal/mol@LB@Unfolding Energy - mRNA 6.07036 kcal/mol@LB@Unfolding Energy - sRNA 6.81885 kcal/mol@LB@@LB@Position - mRNA 245 -- 269@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 48 -- 54@LB@ |
20 |
0.0008987 |
0.1511 |
b2597 |
raiA |
-11.08 |
0.071670 |
189 -- 211 |
11 -- 33 |
cold shock protein associated with 30S ribosomal subunit |
|
_____________188_____________________212\n_____________|_______________________|\n5'-GCG...GACAA____________A__________CAUUA...AUC-3'\n______________GAGGUAAAAUUU_UGACAAUGAA\n______________:|::||||||:|_|||||||:||\n______________UUUUAUUUUAGA_ACUGUUAUUU\n3'-UUU...UUGUC____________C__________CCGUA...UUG-5'\n_____________|_______________________|\n_____________34______________________10\n |
205 -- 211 |
11 -- 17 |
-19.0558 kcal/mol |
3.03608 kcal/mol |
4.94152 kcal/mol |
188 212@LB@ | |@LB@5'-GCG...GACAA A CAUUA...AUC-3'@LB@ GAGGUAAAAUUU UGACAAUGAA@LB@ :|::||||||:| |||||||:||@LB@ UUUUAUUUUAGA ACUGUUAUUU@LB@3'-UUU...UUGUC C CCGUA...UUG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.0558 kcal/mol@LB@Unfolding Energy - mRNA 3.03608 kcal/mol@LB@Unfolding Energy - sRNA 4.94152 kcal/mol@LB@@LB@Position - mRNA 189 -- 211@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 11 -- 17@LB@ |
21 |
0.0009862 |
0.1579 |
b2572 |
rseA |
-10.60 |
0.091224 |
9 -- 29 |
44 -- 65 |
anti-sigma factor |
|
_____________8______________________30\n_____________|______________________|\n___5'-UCCCUCCC________UAC____UG_____AACCU...GGG-3'\n______________GGAAGAUU____GCA__GCAAU\n______________||||:||:____|||__|||||\n______________CCUUUUAG____CGU__CGUUA\n3'-UUU...UACAA________UCAC___UA_____CCGGG...UUG-5'\n_____________|______________________|\n_____________66_____________________43\n |
10 -- 16 |
58 -- 64 |
-18.0609 kcal/mol |
3.14057 kcal/mol |
4.32401 kcal/mol |
8 30@LB@ | |@LB@ 5'-UCCCUCCC UAC UG AACCU...GGG-3'@LB@ GGAAGAUU GCA GCAAU@LB@ ||||:||: ||| |||||@LB@ CCUUUUAG CGU CGUUA@LB@3'-UUU...UACAA UCAC UA CCGGG...UUG-5'@LB@ | |@LB@ 66 43@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -18.0609 kcal/mol@LB@Unfolding Energy - mRNA 3.14057 kcal/mol@LB@Unfolding Energy - sRNA 4.32401 kcal/mol@LB@@LB@Position - mRNA 9 -- 29@LB@Position - sRNA 44 -- 65@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 58 -- 64@LB@ |
22 |
0.001182 |
0.1807 |
b3642 |
pyrE |
-13.24 |
0.022299 |
74 -- 119 |
8 -- 48 |
orotate phosphoribosyltransferase |
|
_____________73______________________________________________120\n_____________|_______________________________________________|\n5'-CGG...UGUUG__UC________G_____UC______CAU___AGC____CA______GGCGC...AUU-3'\n______________GC__UGGCCCGA_GGGAA___GAAUC___UGU___GACG__GAAGGC\n______________||__||||||:|_:|:||___:||||___|||___|||:__:|||||\n______________CG__ACCGGGUU_UCUUU___UUUAG___ACA___CUGU__UUUCCG\n3'-UUU...CGUUA__UU________G_____UAU__________________UA______UAUAUUG-5'\n_____________|_______________________________________________|\n_____________49______________________________________________7\n |
79 -- 85 |
37 -- 43 |
-37.0606 kcal/mol |
11.836 kcal/mol |
11.9819 kcal/mol |
73 120@LB@ | |@LB@5'-CGG...UGUUG UC G UC CAU AGC CA GGCGC...AUU-3'@LB@ GC UGGCCCGA GGGAA GAAUC UGU GACG GAAGGC@LB@ || ||||||:| :|:|| :|||| ||| |||: :|||||@LB@ CG ACCGGGUU UCUUU UUUAG ACA CUGU UUUCCG@LB@3'-UUU...CGUUA UU G UAU UA UAUAUUG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -13.24 kcal/mol@LB@Hybridization Energy -37.0606 kcal/mol@LB@Unfolding Energy - mRNA 11.836 kcal/mol@LB@Unfolding Energy - sRNA 11.9819 kcal/mol@LB@@LB@Position - mRNA 74 -- 119@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 37 -- 43@LB@ |
23 |
0.001281 |
0.182 |
b3541 |
dppD |
-11.06 |
0.072175 |
116 -- 139 |
1 -- 23 |
dipeptide/heme ABC transporter ATPas |
|
_____________115______________________140\n_____________|________________________|\n5'-UUU...CGAUC___C________CU_____U____CUGAU...GCG-3'\n______________CUG_UGACGGUG__GGCAU_UAAC\n______________|||_||||::|:__|||||_||||\n______________GAC_ACUGUUAU__CCGUA_AUUG\n3'-UUU...UUUUA____________UU_____U____-5'\n_____________|_______________________|\n_____________24______________________1\n |
121 -- 127 |
13 -- 19 |
-21.9665 kcal/mol |
6.28511 kcal/mol |
4.61692 kcal/mol |
115 140@LB@ | |@LB@5'-UUU...CGAUC C CU U CUGAU...GCG-3'@LB@ CUG UGACGGUG GGCAU UAAC@LB@ ||| ||||::|: ||||| ||||@LB@ GAC ACUGUUAU CCGUA AUUG@LB@3'-UUU...UUUUA UU U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -21.9665 kcal/mol@LB@Unfolding Energy - mRNA 6.28511 kcal/mol@LB@Unfolding Energy - sRNA 4.61692 kcal/mol@LB@@LB@Position - mRNA 116 -- 139@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 13 -- 19@LB@ |
24 |
0.001299 |
0.182 |
b1267 |
yciO |
-12.11 |
0.041783 |
4 -- 24 |
36 -- 58 |
putative RNA binding protein |
|
_____________3_______________________25\n_____________|_______________________|\n________5'-GCG_____C_________C_______GAACG...CAA-3'\n______________CAGUG_CA__GCAAU_GCCCAAU\n______________|||||_||__|||||_||||||:\n______________GUCAC_GU__CGUUA_CGGGUUG\n3'-UUU...UUUUA_____C__UA_____C_______UCUUU...UUG-5'\n_____________|_______________________|\n_____________59______________________35\n |
18 -- 24 |
36 -- 42 |
-24.2706 kcal/mol |
1.86377 kcal/mol |
10.2972 kcal/mol |
3 25@LB@ | |@LB@ 5'-GCG C C GAACG...CAA-3'@LB@ CAGUG CA GCAAU GCCCAAU@LB@ ||||| || ||||| ||||||:@LB@ GUCAC GU CGUUA CGGGUUG@LB@3'-UUU...UUUUA C UA C UCUUU...UUG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -24.2706 kcal/mol@LB@Unfolding Energy - mRNA 1.86377 kcal/mol@LB@Unfolding Energy - sRNA 10.2972 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 36 -- 42@LB@ |
25 |
0.001369 |
0.1841 |
b2599 |
pheA |
-10.09 |
0.116571 |
180 -- 205 |
1 -- 20 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________179________________________206\n_____________|__________________________|\n5'-UGA...UUUAU______CAA_______ACAC______AUCGG...UCG-3'\n______________UGAUAA___AAAGGCA____UAUGAC\n______________|||:||___|||||||____|||:||\n______________ACUGUU___UUUCCGU____AUAUUG\n3'-UUU...UAGAC______A___________________-5'\n_____________|_________________________|\n_____________21________________________1\n |
189 -- 195 |
7 -- 13 |
-16.49 kcal/mol |
2.17136 kcal/mol |
4.22784 kcal/mol |
179 206@LB@ | |@LB@5'-UGA...UUUAU CAA ACAC AUCGG...UCG-3'@LB@ UGAUAA AAAGGCA UAUGAC@LB@ |||:|| ||||||| |||:||@LB@ ACUGUU UUUCCGU AUAUUG@LB@3'-UUU...UAGAC A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -16.49 kcal/mol@LB@Unfolding Energy - mRNA 2.17136 kcal/mol@LB@Unfolding Energy - sRNA 4.22784 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 7 -- 13@LB@ |
26 |
0.00144 |
0.1863 |
b4406 |
yaeP |
-8.75 |
0.213688 |
187 -- 204 |
2 -- 20 |
UPF0253 family protein |
|
_____________186_________________205\n_____________|___________________|\n5'-ACC...AGUGC_____G_____________AAAAA...UGC-3'\n______________UGACA__GAGGGCAUGUGG\n______________|||||__:|:|||||:|::\n______________ACUGU__UUUCCGUAUAUU\n3'-UUU...UAGAC_____UA____________G-5'\n_____________|___________________|\n_____________21__________________1\n |
197 -- 203 |
3 -- 9 |
-20.0716 kcal/mol |
7.09254 kcal/mol |
4.22649 kcal/mol |
186 205@LB@ | |@LB@5'-ACC...AGUGC G AAAAA...UGC-3'@LB@ UGACA GAGGGCAUGUGG@LB@ ||||| :|:|||||:|::@LB@ ACUGU UUUCCGUAUAUU@LB@3'-UUU...UAGAC UA G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -20.0716 kcal/mol@LB@Unfolding Energy - mRNA 7.09254 kcal/mol@LB@Unfolding Energy - sRNA 4.22649 kcal/mol@LB@@LB@Position - mRNA 187 -- 204@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |