| 138 |
0.01562 |
0.3807 |
b1735 |
chbR |
-9.56 |
0.149643 |
62 -- 73 |
41 -- 54 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________61_____________74\n_____________|______________|\n5'-GAU...UUGAA______________GAAGG...CUG-3'\n______________GGCGAUGCG__GGC\n______________|||:||||:__|||\n______________CCGUUACGU__CCG\n3'-UUU...AGUCA_________UA___GGUUG...UUG-5'\n_____________|______________|\n_____________55_____________40\n |
64 -- 70 |
46 -- 52 |
-18.6965 kcal/mol |
5.24959 kcal/mol |
3.89026 kcal/mol |
61 74@LB@ | |@LB@5'-GAU...UUGAA GAAGG...CUG-3'@LB@ GGCGAUGCG GGC@LB@ |||:||||: |||@LB@ CCGUUACGU CCG@LB@3'-UUU...AGUCA UA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -18.6965 kcal/mol@LB@Unfolding Energy - mRNA 5.24959 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 62 -- 73@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 139 |
0.0159 |
0.3828 |
b2108 |
yehA |
-9.84 |
0.131393 |
50 -- 60 |
55 -- 65 |
putative fimbrial-like adhesin protein |
|
_____________49__________61\n_____________|___________|\n5'-GUU...GGCCA___________UAUUU...UUG-3'\n______________GGGAAGUCAGU\n______________||:||:|||||\n______________CCUUUUAGUCA\n3'-UUU...UACAA___________CCGUU...UUG-5'\n_____________|___________|\n_____________66__________54\n |
54 -- 60 |
55 -- 61 |
-13.8721 kcal/mol |
3.08221 kcal/mol |
0.952476 kcal/mol |
49 61@LB@ | |@LB@5'-GUU...GGCCA UAUUU...UUG-3'@LB@ GGGAAGUCAGU@LB@ ||:||:|||||@LB@ CCUUUUAGUCA@LB@3'-UUU...UACAA CCGUU...UUG-5'@LB@ | |@LB@ 66 54@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -13.8721 kcal/mol@LB@Unfolding Energy - mRNA 3.08221 kcal/mol@LB@Unfolding Energy - sRNA 0.952476 kcal/mol@LB@@LB@Position - mRNA 50 -- 60@LB@Position - sRNA 55 -- 65@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 140 |
0.01599 |
0.3828 |
b0119 |
yacL |
-11.32 |
0.063485 |
266 -- 299 |
25 -- 57 |
UPF0231 family protein |
|
_____________265_________________________________300\n_____________|___________________________________|\n5'-GGU...CAUGA______CGG___C_________GA___________G-3'\n______________AGUGGU___GCA_UGGUUUAAU__AGA_GGUGAAA\n______________|||||:___|||_|||:::||:__|||_::|:|||\n______________UCACCG___CGU_ACCGGGUUG__UCU_UUAUUUU\n3'-UUU...UUUAG______UUA___U______________U_______AGACA...UUG-5'\n_____________|___________________________________|\n_____________58__________________________________24\n |
293 -- 299 |
25 -- 31 |
-25.5028 kcal/mol |
4.248 kcal/mol |
9.93955 kcal/mol |
265 300@LB@ | |@LB@5'-GGU...CAUGA CGG C GA G-3'@LB@ AGUGGU GCA UGGUUUAAU AGA GGUGAAA@LB@ |||||: ||| |||:::||: ||| ::|:|||@LB@ UCACCG CGU ACCGGGUUG UCU UUAUUUU@LB@3'-UUU...UUUAG UUA U U AGACA...UUG-5'@LB@ | |@LB@ 58 24@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -25.5028 kcal/mol@LB@Unfolding Energy - mRNA 4.248 kcal/mol@LB@Unfolding Energy - sRNA 9.93955 kcal/mol@LB@@LB@Position - mRNA 266 -- 299@LB@Position - sRNA 25 -- 57@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 143 |
0.01651 |
0.3828 |
b2793 |
syd |
-11.91 |
0.046390 |
192 -- 225 |
39 -- 65 |
SecY-interacting protein |
|
_____________191________________________________226\n_____________|__________________________________|\n5'-UCA...GAAGA_A___________A____UUGACC___CAA____UGAAA...UGU-3'\n______________G_GAAAUUAGUGG_CGAU______GCA___GCCC\n______________|_:||||:|||||_|:||______|||___||||\n______________C_UUUUAGUCACC_GUUA______CGU___CGGG\n3'-UUU...UACAA_C_________________________UAC____UUGUC...UUG-5'\n_____________|__________________________________|\n_____________66_________________________________38\n |
198 -- 204 |
53 -- 59 |
-24.7129 kcal/mol |
6.12952 kcal/mol |
6.66922 kcal/mol |
191 226@LB@ | |@LB@5'-UCA...GAAGA A A UUGACC CAA UGAAA...UGU-3'@LB@ G GAAAUUAGUGG CGAU GCA GCCC@LB@ | :||||:||||| |:|| ||| ||||@LB@ C UUUUAGUCACC GUUA CGU CGGG@LB@3'-UUU...UACAA C UAC UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -24.7129 kcal/mol@LB@Unfolding Energy - mRNA 6.12952 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 192 -- 225@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 144 |
0.01658 |
0.3828 |
b3731 |
atpC |
-9.12 |
0.181998 |
70 -- 89 |
6 -- 25 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________69___________________90\n_____________|____________________|\n5'-UCC...ACACC___C_____UU_________CAUGG...UGG-3'\n______________AUC_GUGGC__UAAAGGCAU\n______________|||_|||:|__|||||||||\n______________UAG_CACUG__AUUUCCGUA\n3'-UUU...UAUUU___A_____UU_________UAUUG-5'\n_____________|____________________|\n_____________26___________________5\n |
83 -- 89 |
6 -- 12 |
-21.8685 kcal/mol |
8.00712 kcal/mol |
4.73944 kcal/mol |
69 90@LB@ | |@LB@5'-UCC...ACACC C UU CAUGG...UGG-3'@LB@ AUC GUGGC UAAAGGCAU@LB@ ||| |||:| |||||||||@LB@ UAG CACUG AUUUCCGUA@LB@3'-UUU...UAUUU A UU UAUUG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -9.12 kcal/mol@LB@Hybridization Energy -21.8685 kcal/mol@LB@Unfolding Energy - mRNA 8.00712 kcal/mol@LB@Unfolding Energy - sRNA 4.73944 kcal/mol@LB@@LB@Position - mRNA 70 -- 89@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 145 |
0.01667 |
0.3828 |
b1835 |
rsmF |
-17.85 |
0.001164 |
186 -- 211 |
35 -- 58 |
16S rRNA m(5)C1407 methyltransferase SAM-dependent |
|
_____________185________________________212\n_____________|__________________________|\n5'-CGC...UUUGC________C____UC___________CACCG...GUC-3'\n______________CAGUGGUA_AUGC__GUGGCCCAACA\n______________||||||:|_||||__:||||||||||\n______________GUCACCGU_UACG__UACCGGGUUGU\n3'-UUU...UUUUA_____________U____________CUUUU...UUG-5'\n_____________|__________________________|\n_____________59_________________________34\n |
205 -- 211 |
35 -- 41 |
-37.9392 kcal/mol |
9.33395 kcal/mol |
10.7541 kcal/mol |
185 212@LB@ | |@LB@5'-CGC...UUUGC C UC CACCG...GUC-3'@LB@ CAGUGGUA AUGC GUGGCCCAACA@LB@ ||||||:| |||| :||||||||||@LB@ GUCACCGU UACG UACCGGGUUGU@LB@3'-UUU...UUUUA U CUUUU...UUG-5'@LB@ | |@LB@ 59 34@LB@@LB@@LB@Energy -17.85 kcal/mol@LB@Hybridization Energy -37.9392 kcal/mol@LB@Unfolding Energy - mRNA 9.33395 kcal/mol@LB@Unfolding Energy - sRNA 10.7541 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 35 -- 58@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 146 |
0.01679 |
0.3828 |
b2699 |
recA |
-5.90 |
0.590167 |
190 -- 206 |
40 -- 58 |
DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
|
_____________189_________________207\n_____________|___________________|\n5'-UGC...CAUGA___GA____A_________AUCGA...ACC-3'\n______________CAG__GUAA___AAUGGCU\n______________|||__|:||___||||||:\n______________GUC__CGUU___UUACCGG\n3'-UUU...UUUUA___AC____ACG_______GUUGU...UUG-5'\n_____________|___________________|\n_____________59__________________39\n |
200 -- 206 |
40 -- 46 |
-15.424 kcal/mol |
3.45581 kcal/mol |
6.06808 kcal/mol |
189 207@LB@ | |@LB@5'-UGC...CAUGA GA A AUCGA...ACC-3'@LB@ CAG GUAA AAUGGCU@LB@ ||| |:|| ||||||:@LB@ GUC CGUU UUACCGG@LB@3'-UUU...UUUUA AC ACG GUUGU...UUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -15.424 kcal/mol@LB@Unfolding Energy - mRNA 3.45581 kcal/mol@LB@Unfolding Energy - sRNA 6.06808 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 147 |
0.01713 |
0.3828 |
b3354 |
yheU |
-14.93 |
0.008191 |
201 -- 276 |
7 -- 70 |
UPF0270 family protein |
|
_____________200_____________________________________________________________________________277\n_____________|_______________________________________________________________________________|\n5'-CUG...AAAUC______AU_____C_______GACCUCUCC_____AACGC________UU____GAAAGCUU____UUAC_________CCGAU...GUA-3'\n______________AUGUUG_____UC_GUGGCAA_________CCCGA_____UGGAAAAU__AAUU________UGUG____GUGAAGGCA\n______________||||||_____||_|||||||_________|||:|_____::||||||__|||:________||||____:|:||||||\n______________UACAAC_____AG_CACCGUU_________GGGUU_____GUCUUUUA__UUAG________ACAC____UAUUUCCGU\n3'-UUU...AAAUA______CUUUU__U_______ACGUUACC___________________UU________________UGU__________AUAUUG-5'\n_____________|_______________________________________________________________________________|\n_____________71______________________________________________________________________________6\n |
270 -- 276 |
7 -- 13 |
-40.9535 kcal/mol |
13.8654 kcal/mol |
12.1606 kcal/mol |
200 277@LB@ | |@LB@5'-CUG...AAAUC AU C GACCUCUCC AACGC UU GAAAGCUU UUAC CCGAU...GUA-3'@LB@ AUGUUG UC GUGGCAA CCCGA UGGAAAAU AAUU UGUG GUGAAGGCA@LB@ |||||| || ||||||| |||:| ::|||||| |||: |||| :|:||||||@LB@ UACAAC AG CACCGUU GGGUU GUCUUUUA UUAG ACAC UAUUUCCGU@LB@3'-UUU...AAAUA CUUUU U ACGUUACC UU UGU AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -14.93 kcal/mol@LB@Hybridization Energy -40.9535 kcal/mol@LB@Unfolding Energy - mRNA 13.8654 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 201 -- 276@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 148 |
0.01733 |
0.3828 |
b1760 |
ynjH |
-7.42 |
0.362448 |
2 -- 64 |
11 -- 71 |
DUF1496 family protein |
|
_____________1________________________________________________________________65\n_____________|________________________________________________________________|\n__________5'-U_______UUUAU____U___CUUU______U_______UAUACCAUCAAGAA____________CAAGA...AAG-3'\n______________UAUGUUG_____GUCA_GUG____UGCAGU__UUCGAC______________UGUGACGGUAAG\n______________|||||||_____:|||_|||____||||:|__::|:||______________||||||::|||:\n______________AUACAAC_____UAGU_CAC____ACGUUA__GGGUUG______________ACACUGUUAUUU\n3'-UUU...AAAAU_______CUUU_________CGUU______CC______UCUUUUAUUUUAG_____________CCGUA...UUG-5'\n_____________|________________________________________________________________|\n_____________72_______________________________________________________________10\n |
58 -- 64 |
11 -- 17 |
-35.6179 kcal/mol |
16.0903 kcal/mol |
12.1045 kcal/mol |
1 65@LB@ | |@LB@ 5'-U UUUAU U CUUU U UAUACCAUCAAGAA CAAGA...AAG-3'@LB@ UAUGUUG GUCA GUG UGCAGU UUCGAC UGUGACGGUAAG@LB@ ||||||| :||| ||| ||||:| ::|:|| ||||||::|||:@LB@ AUACAAC UAGU CAC ACGUUA GGGUUG ACACUGUUAUUU@LB@3'-UUU...AAAAU CUUU CGUU CC UCUUUUAUUUUAG CCGUA...UUG-5'@LB@ | |@LB@ 72 10@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -35.6179 kcal/mol@LB@Unfolding Energy - mRNA 16.0903 kcal/mol@LB@Unfolding Energy - sRNA 12.1045 kcal/mol@LB@@LB@Position - mRNA 2 -- 64@LB@Position - sRNA 11 -- 71@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 149 |
0.01777 |
0.3828 |
b3024 |
ygiW |
-12.90 |
0.027028 |
214 -- 237 |
39 -- 58 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________213______________________238\n_____________|________________________|\n5'-UGA...AUUCG___CA_____CGCA__________UGUGC...AAA-3'\n______________CAG__GUAAU____GUAAUGGCCC\n______________|||__|:|||____|:||||||||\n______________GUC__CGUUA____CGUUACCGGG\n3'-UUU...UUUUA___AC___________________UUGUC...UUG-5'\n_____________|________________________|\n_____________59_______________________38\n |
231 -- 237 |
39 -- 45 |
-23.1488 kcal/mol |
3.67833 kcal/mol |
6.56779 kcal/mol |
213 238@LB@ | |@LB@5'-UGA...AUUCG CA CGCA UGUGC...AAA-3'@LB@ CAG GUAAU GUAAUGGCCC@LB@ ||| |:||| |:||||||||@LB@ GUC CGUUA CGUUACCGGG@LB@3'-UUU...UUUUA AC UUGUC...UUG-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -23.1488 kcal/mol@LB@Unfolding Energy - mRNA 3.67833 kcal/mol@LB@Unfolding Energy - sRNA 6.56779 kcal/mol@LB@@LB@Position - mRNA 214 -- 237@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |
