128 |
0.01375 |
0.3614 |
b1271 |
yciK |
-9.18 |
0.177475 |
2 -- 35 |
4 -- 52 |
putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase |
|
_____________1_________________________________________________36\n_____________|_________________________________________________|\n__________5'-A___C__UU___________UUU________________C__________UAAGC...CAC-3'\n______________CAA_GC__UGGCUC_ACAG_______________ACAA___AGGCAUGU\n______________|||_||__||||:|_||||_______________||||___||||||:|\n______________GUU_CG__ACCGGG_UGUC_______________UGUU___UCCGUAUA\n3'-UUU...UCACC___A__UU______U____UUUUAUUUUAGACAC____AUU________UUG-5'\n_____________|_________________________________________________|\n_____________53________________________________________________3\n |
29 -- 35 |
4 -- 10 |
-28.8633 kcal/mol |
7.6461 kcal/mol |
12.0385 kcal/mol |
1 36@LB@ | |@LB@ 5'-A C UU UUU C UAAGC...CAC-3'@LB@ CAA GC UGGCUC ACAG ACAA AGGCAUGU@LB@ ||| || ||||:| |||| |||| ||||||:|@LB@ GUU CG ACCGGG UGUC UGUU UCCGUAUA@LB@3'-UUU...UCACC A UU U UUUUAUUUUAGACAC AUU UUG-5'@LB@ | |@LB@ 53 3@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -28.8633 kcal/mol@LB@Unfolding Energy - mRNA 7.6461 kcal/mol@LB@Unfolding Energy - sRNA 12.0385 kcal/mol@LB@@LB@Position - mRNA 2 -- 35@LB@Position - sRNA 4 -- 52@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 4 -- 10@LB@ |
129 |
0.01395 |
0.3636 |
b2314 |
dedD |
-15.05 |
0.007607 |
192 -- 211 |
45 -- 65 |
membrane-anchored periplasmic protein involved in septation |
|
_____________191___________________212\n_____________|_____________________|\n5'-UUG...CGCGA______G______________GUUUC...AUU-3'\n______________GGAGAA_CGGUGGCAA_GUAA\n______________|||:||_|:|||||||_|:||\n______________CCUUUU_GUCACCGUU_CGUU\n3'-UUU...UACAA______A_________A____ACCGG...UUG-5'\n_____________|_____________________|\n_____________66____________________44\n |
201 -- 207 |
50 -- 56 |
-23.8601 kcal/mol |
4.54883 kcal/mol |
4.26469 kcal/mol |
191 212@LB@ | |@LB@5'-UUG...CGCGA G GUUUC...AUU-3'@LB@ GGAGAA CGGUGGCAA GUAA@LB@ |||:|| |:||||||| |:||@LB@ CCUUUU GUCACCGUU CGUU@LB@3'-UUU...UACAA A A ACCGG...UUG-5'@LB@ | |@LB@ 66 44@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -23.8601 kcal/mol@LB@Unfolding Energy - mRNA 4.54883 kcal/mol@LB@Unfolding Energy - sRNA 4.26469 kcal/mol@LB@@LB@Position - mRNA 192 -- 211@LB@Position - sRNA 45 -- 65@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 50 -- 56@LB@ |
130 |
0.01417 |
0.3654 |
b3188 |
sfsB |
-12.77 |
0.029182 |
125 -- 158 |
30 -- 65 |
malPQ operon transcriptional activator |
|
_____________124__________________________________159\n_____________|____________________________________|\n5'-CGG...CAAUA__CC______GA___UA___________________AGUGU...UGA-3'\n______________GG___AUCAG__GUA__GUGAU_GCUCGACAGAAGA\n______________||___|||||__|:|__|::||_||:|:||||||:|\n______________CC___UAGUC__CGU__CGUUA_CGGGUUGUCUUUU\n3'-UUU...UACAA__UUU_____AC___UA_____C_____________AUUUU...UUG-5'\n_____________|____________________________________|\n_____________66___________________________________29\n |
152 -- 158 |
30 -- 36 |
-32.1455 kcal/mol |
8.39464 kcal/mol |
10.9856 kcal/mol |
124 159@LB@ | |@LB@5'-CGG...CAAUA CC GA UA AGUGU...UGA-3'@LB@ GG AUCAG GUA GUGAU GCUCGACAGAAGA@LB@ || ||||| |:| |::|| ||:|:||||||:|@LB@ CC UAGUC CGU CGUUA CGGGUUGUCUUUU@LB@3'-UUU...UACAA UUU AC UA C AUUUU...UUG-5'@LB@ | |@LB@ 66 29@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -32.1455 kcal/mol@LB@Unfolding Energy - mRNA 8.39464 kcal/mol@LB@Unfolding Energy - sRNA 10.9856 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 30 -- 65@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 30 -- 36@LB@ |
131 |
0.01428 |
0.3654 |
b2099 |
yegU |
-10.27 |
0.106798 |
246 -- 258 |
42 -- 54 |
ADP-ribosylglycohydrolase family protein |
|
_____________245___________259\n_____________|_____________|\n5'-GUG...CGUUA__G__________GGAUG...CAC-3'\n______________GG_GAUGCGAUGG\n______________||_:||||:||||\n______________CC_UUACGUUACC\n3'-UUU...AGUCA__G__________GGGUU...UUG-5'\n_____________|_____________|\n_____________55____________41\n |
252 -- 258 |
42 -- 48 |
-19.8763 kcal/mol |
6.10373 kcal/mol |
3.49932 kcal/mol |
245 259@LB@ | |@LB@5'-GUG...CGUUA G GGAUG...CAC-3'@LB@ GG GAUGCGAUGG@LB@ || :||||:||||@LB@ CC UUACGUUACC@LB@3'-UUU...AGUCA G GGGUU...UUG-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -19.8763 kcal/mol@LB@Unfolding Energy - mRNA 6.10373 kcal/mol@LB@Unfolding Energy - sRNA 3.49932 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 42 -- 48@LB@ |
132 |
0.0144 |
0.3654 |
b2381 |
ypdB |
-7.98 |
0.293473 |
18 -- 39 |
11 -- 32 |
response regulator activating yhjX; pyruvate-responsive YpdAB two-component system |
|
_____________17_____________________40\n_____________|______________________|\n5'-AUU...GAAGC_________GCCG_________AUUGG...ACG-3'\n______________GAAUGAAAU____GGCAAUAAA\n______________:|||:||||____|:|||||||\n______________UUUAUUUUA____CUGUUAUUU\n3'-UUU...UGUCU_________GACA_________CCGUA...UUG-5'\n_____________|______________________|\n_____________33_____________________10\n |
33 -- 39 |
11 -- 17 |
-14.9693 kcal/mol |
2.07375 kcal/mol |
4.91579 kcal/mol |
17 40@LB@ | |@LB@5'-AUU...GAAGC GCCG AUUGG...ACG-3'@LB@ GAAUGAAAU GGCAAUAAA@LB@ :|||:|||| |:|||||||@LB@ UUUAUUUUA CUGUUAUUU@LB@3'-UUU...UGUCU GACA CCGUA...UUG-5'@LB@ | |@LB@ 33 10@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -14.9693 kcal/mol@LB@Unfolding Energy - mRNA 2.07375 kcal/mol@LB@Unfolding Energy - sRNA 4.91579 kcal/mol@LB@@LB@Position - mRNA 18 -- 39@LB@Position - sRNA 11 -- 32@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 11 -- 17@LB@ |
133 |
0.01445 |
0.3654 |
b1260 |
trpA |
-8.36 |
0.252100 |
71 -- 77 |
38 -- 44 |
tryptophan synthase alpha subunit |
|
_____________70______78\n_____________|_______|\n5'-GCC...CGCCC_______UGCGU...CAU-3'\n______________UGGCCCA\n______________|||||||\n______________ACCGGGU\n3'-UUU...ACGUU_______UGUCU...UUG-5'\n_____________|_______|\n_____________45______37\n |
71 -- 77 |
38 -- 44 |
-13.3519 kcal/mol |
1.05946 kcal/mol |
3.93445 kcal/mol |
70 78@LB@ | |@LB@5'-GCC...CGCCC UGCGU...CAU-3'@LB@ UGGCCCA@LB@ |||||||@LB@ ACCGGGU@LB@3'-UUU...ACGUU UGUCU...UUG-5'@LB@ | |@LB@ 45 37@LB@@LB@@LB@Energy -8.36 kcal/mol@LB@Hybridization Energy -13.3519 kcal/mol@LB@Unfolding Energy - mRNA 1.05946 kcal/mol@LB@Unfolding Energy - sRNA 3.93445 kcal/mol@LB@@LB@Position - mRNA 71 -- 77@LB@Position - sRNA 38 -- 44@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 38 -- 44@LB@ |
134 |
0.01498 |
0.3759 |
b3388 |
damX |
-9.22 |
0.174550 |
186 -- 204 |
42 -- 59 |
cell division protein that binds to the septal ring |
|
_____________185__________________205\n_____________|____________________|\n5'-GGG...ACCUU_____________UA_____AUGAA...AAC-3'\n______________UUAGUGG_GGUGU__AAUGG\n______________|:|||||_::||:__|||||\n______________AGUCACC_UUACG__UUACC\n3'-UUU...CUUUU_______G____________GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
186 -- 192 |
53 -- 59 |
-16.4488 kcal/mol |
3.53707 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-GGG...ACCUU UA AUGAA...AAC-3'@LB@ UUAGUGG GGUGU AAUGG@LB@ |:||||| ::||: |||||@LB@ AGUCACC UUACG UUACC@LB@3'-UUU...CUUUU G GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -16.4488 kcal/mol@LB@Unfolding Energy - mRNA 3.53707 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 53 -- 59@LB@ |
135 |
0.01531 |
0.3774 |
b3224 |
nanT |
-10.34 |
0.103537 |
56 -- 77 |
28 -- 54 |
sialic acid transporter |
|
_____________55__________________________78\n_____________|___________________________|\n5'-CGC...CUGAA_____________________UU____CAAGA...GUU-3'\n______________GGC___GC__UGGCCCAGCAG__GAUG\n______________|||___||__|||||||:|||__:||:\n______________CCG___CG__ACCGGGUUGUC__UUAU\n3'-UUU...AGUCA___UUA__UU___________UU____UUUAG...UUG-5'\n_____________|___________________________|\n_____________55__________________________27\n |
63 -- 69 |
36 -- 42 |
-28.0045 kcal/mol |
8.68418 kcal/mol |
8.98285 kcal/mol |
55 78@LB@ | |@LB@5'-CGC...CUGAA UU CAAGA...GUU-3'@LB@ GGC GC UGGCCCAGCAG GAUG@LB@ ||| || |||||||:||| :||:@LB@ CCG CG ACCGGGUUGUC UUAU@LB@3'-UUU...AGUCA UUA UU UU UUUAG...UUG-5'@LB@ | |@LB@ 55 27@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -28.0045 kcal/mol@LB@Unfolding Energy - mRNA 8.68418 kcal/mol@LB@Unfolding Energy - sRNA 8.98285 kcal/mol@LB@@LB@Position - mRNA 56 -- 77@LB@Position - sRNA 28 -- 54@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 36 -- 42@LB@ |
136 |
0.01532 |
0.3774 |
b3054 |
ygiF |
-8.05 |
0.285135 |
192 -- 208 |
38 -- 53 |
inorganic triphosphatase |
|
_____________191_______________209\n_____________|_________________|\n5'-GGC...GAUAA____AG__C________GGAAA...CCG-3'\n______________GUAA__GC_AUGGCUCA\n______________|:||__||_|||||:||\n______________CGUU__CG_UACCGGGU\n3'-UUU...GUCAC____A___U________UGUCU...UUG-5'\n_____________|_________________|\n_____________54________________37\n |
202 -- 208 |
38 -- 44 |
-16.8567 kcal/mol |
4.04422 kcal/mol |
4.7597 kcal/mol |
191 209@LB@ | |@LB@5'-GGC...GAUAA AG C GGAAA...CCG-3'@LB@ GUAA GC AUGGCUCA@LB@ |:|| || |||||:||@LB@ CGUU CG UACCGGGU@LB@3'-UUU...GUCAC A U UGUCU...UUG-5'@LB@ | |@LB@ 54 37@LB@@LB@@LB@Energy -8.05 kcal/mol@LB@Hybridization Energy -16.8567 kcal/mol@LB@Unfolding Energy - mRNA 4.04422 kcal/mol@LB@Unfolding Energy - sRNA 4.7597 kcal/mol@LB@@LB@Position - mRNA 192 -- 208@LB@Position - sRNA 38 -- 53@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 38 -- 44@LB@ |
137 |
0.01537 |
0.3774 |
b0952 |
pqiC |
-8.31 |
0.257066 |
203 -- 237 |
17 -- 64 |
DUF330 family putative lipoprotein |
|
_____________202________________________________________________238\n_____________|__________________________________________________|\n5'-ACG...ACAAU_____________U____A_______G_______________________UGGCC...GCG-3'\n______________GAAAA__AGUGGC_AGUG_CGAU__U_CAGCA___________CUGUGGC\n______________|||||__||||||_|:||_|:||__:_||:||___________|||||:|\n______________CUUUU__UCACCG_UUAC_GUUA__G_GUUGU___________GACACUG\n3'-UUU...ACAAC_____AG________________CC_G_____CUUUUAUUUUA_______UUAUU...UUG-5'\n_____________|__________________________________________________|\n_____________65_________________________________________________16\n |
231 -- 237 |
17 -- 23 |
-29.1693 kcal/mol |
9.7543 kcal/mol |
11.1047 kcal/mol |
202 238@LB@ | |@LB@5'-ACG...ACAAU U A G UGGCC...GCG-3'@LB@ GAAAA AGUGGC AGUG CGAU U CAGCA CUGUGGC@LB@ ||||| |||||| |:|| |:|| : ||:|| |||||:|@LB@ CUUUU UCACCG UUAC GUUA G GUUGU GACACUG@LB@3'-UUU...ACAAC AG CC G CUUUUAUUUUA UUAUU...UUG-5'@LB@ | |@LB@ 65 16@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -29.1693 kcal/mol@LB@Unfolding Energy - mRNA 9.7543 kcal/mol@LB@Unfolding Energy - sRNA 11.1047 kcal/mol@LB@@LB@Position - mRNA 203 -- 237@LB@Position - sRNA 17 -- 64@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 17 -- 23@LB@ |