| 98 |
0.009218 |
0.3118 |
b3391 |
hofQ |
-10.83 |
0.081241 |
8 -- 57 |
7 -- 65 |
DNA catabolic putative fimbrial transporter |
|
_____________7_____________________________________________________________58\n_____________|_____________________________________________________________|\n____5'-CUAUCAG____UGG_________G____GC__A___U___UGU_________________________AAAGA...UAG-3'\n______________GGGA___UAG_GGCGA_GCGA__GC_UCA_CGG___AAUAAAA_____GAC_____GGGCA\n______________||:|___:||_|||:|_||:|__||_:||_|:|___|||||||_____|||_____:||||\n______________CCUU___GUC_CCGUU_CGUU__CG_GGU_GUC___UUAUUUU_____CUG_____UCCGU\n3'-UUU...UACAA____UUA___A_____A____AC______U___UU________AGACA___UUAUU_____AUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________6\n |
43 -- 49 |
25 -- 31 |
-34.6984 kcal/mol |
11.715 kcal/mol |
12.1538 kcal/mol |
7 58@LB@ | |@LB@ 5'-CUAUCAG UGG G GC A U UGU AAAGA...UAG-3'@LB@ GGGA UAG GGCGA GCGA GC UCA CGG AAUAAAA GAC GGGCA@LB@ ||:| :|| |||:| ||:| || :|| |:| ||||||| ||| :||||@LB@ CCUU GUC CCGUU CGUU CG GGU GUC UUAUUUU CUG UCCGU@LB@3'-UUU...UACAA UUA A A AC U UU AGACA UUAUU AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -34.6984 kcal/mol@LB@Unfolding Energy - mRNA 11.715 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 8 -- 57@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 99 |
0.009334 |
0.3118 |
b0675 |
umpH |
-9.49 |
0.153954 |
143 -- 172 |
39 -- 66 |
UMP phosphatase |
|
_____________142____________________________173\n_____________|______________________________|\n5'-AGC...UUUGC__________A__U__UUUUA_______G_UUAUU...AUA-3'\n______________UGGAAAAUUA_UG_GC_____UAGUGGC_C\n______________||||||||:|_||_||_____:|:||||_|\n______________ACCUUUUAGU_AC_CG_____GUUACCG_G\n3'-UUU...AUACA__________C_____UUAC________G_UUGUC...UUG-5'\n_____________|______________________________|\n_____________67_____________________________38\n |
145 -- 151 |
58 -- 64 |
-25.171 kcal/mol |
9.00393 kcal/mol |
6.67256 kcal/mol |
142 173@LB@ | |@LB@5'-AGC...UUUGC A U UUUUA G UUAUU...AUA-3'@LB@ UGGAAAAUUA UG GC UAGUGGC C@LB@ ||||||||:| || || :|:|||| |@LB@ ACCUUUUAGU AC CG GUUACCG G@LB@3'-UUU...AUACA C UUAC G UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.171 kcal/mol@LB@Unfolding Energy - mRNA 9.00393 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 100 |
0.009417 |
0.3118 |
b4363 |
yjjB |
-11.70 |
0.052026 |
267 -- 280 |
41 -- 54 |
DUF3815 family inner membrane protein |
|
_____________266____________281\n_____________|______________|\n5'-ACU...CGGUC___UU_________GUUCA...GGG-3'\n______________GGC__UGCGAUGGU\n______________|||__|||:||||:\n______________CCG__ACGUUACCG\n3'-UUU...AGUCA___UU_________GGUUG...UUG-5'\n_____________|______________|\n_____________55_____________40\n |
274 -- 280 |
41 -- 47 |
-20.909 kcal/mol |
5.32115 kcal/mol |
3.89026 kcal/mol |
266 281@LB@ | |@LB@5'-ACU...CGGUC UU GUUCA...GGG-3'@LB@ GGC UGCGAUGGU@LB@ ||| |||:||||:@LB@ CCG ACGUUACCG@LB@3'-UUU...AGUCA UU GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -20.909 kcal/mol@LB@Unfolding Energy - mRNA 5.32115 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 267 -- 280@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 101 |
0.009525 |
0.3118 |
b2101 |
yegW |
-12.09 |
0.042153 |
47 -- 73 |
39 -- 66 |
putative DNA-binding transcriptional regulator |
|
_____________46____________________________74\n_____________|_____________________________|\n5'-CGG...GACCG____CAGG___A_____U___________GGUGG...AAA-3'\n______________UGGA____UAG_UGGCA___CAAUGGUCC\n______________||||____:||_|||||___||||||:||\n______________ACCU____GUC_ACCGU___GUUACCGGG\n3'-UUU...AUACA____UUUA_________UAC_________UUGUC...UUG-5'\n_____________|_____________________________|\n_____________67____________________________38\n |
67 -- 73 |
39 -- 45 |
-28.0375 kcal/mol |
9.27172 kcal/mol |
6.67256 kcal/mol |
46 74@LB@ | |@LB@5'-CGG...GACCG CAGG A U GGUGG...AAA-3'@LB@ UGGA UAG UGGCA CAAUGGUCC@LB@ |||| :|| ||||| ||||||:||@LB@ ACCU GUC ACCGU GUUACCGGG@LB@3'-UUU...AUACA UUUA UAC UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -28.0375 kcal/mol@LB@Unfolding Energy - mRNA 9.27172 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 47 -- 73@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 102 |
0.009578 |
0.3118 |
b1247 |
oppF |
-10.09 |
0.116865 |
264 -- 290 |
39 -- 63 |
oligopeptide ABC transporter ATPase |
|
_____________263__________________________291\n_____________|____________________________|\n5'-GCG...ACUUU______AA__A______A__________UGGCA...CGC-3'\n______________GAAAUC__AG_UGGCAA__CAGUGGUUC\n______________:|||||__||_||||||__||:|||::|\n______________UUUUAG__UC_ACCGUU__GUUACCGGG\n3'-UUU...CAACC_________________AC_________UUGUC...UUG-5'\n_____________|____________________________|\n_____________64___________________________38\n |
284 -- 290 |
39 -- 45 |
-23.4236 kcal/mol |
6.69228 kcal/mol |
6.64584 kcal/mol |
263 291@LB@ | |@LB@5'-GCG...ACUUU AA A A UGGCA...CGC-3'@LB@ GAAAUC AG UGGCAA CAGUGGUUC@LB@ :||||| || |||||| ||:|||::|@LB@ UUUUAG UC ACCGUU GUUACCGGG@LB@3'-UUU...CAACC AC UUGUC...UUG-5'@LB@ | |@LB@ 64 38@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -23.4236 kcal/mol@LB@Unfolding Energy - mRNA 6.69228 kcal/mol@LB@Unfolding Energy - sRNA 6.64584 kcal/mol@LB@@LB@Position - mRNA 264 -- 290@LB@Position - sRNA 39 -- 63@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 103 |
0.009615 |
0.3118 |
b4045 |
yjbJ |
-8.83 |
0.207064 |
48 -- 67 |
39 -- 60 |
stress-induced protein UPF0337 family |
|
_____________47______________________68\n_____________|_______________________|\n5'-CGU...GCGGC____C_______________A__UGGUU...AAG-3'\n______________GUCA_UGGC___GCAAUGGU_CC\n______________:|||_||||___|||||||:_||\n______________UAGU_ACCG___CGUUACCG_GG\n3'-UUU...CCUUU____C____UUA___________UUGUC...UUG-5'\n_____________|_______________________|\n_____________61______________________38\n |
58 -- 64 |
41 -- 47 |
-22.6105 kcal/mol |
7.1744 kcal/mol |
6.61009 kcal/mol |
47 68@LB@ | |@LB@5'-CGU...GCGGC C A UGGUU...AAG-3'@LB@ GUCA UGGC GCAAUGGU CC@LB@ :||| |||| |||||||: ||@LB@ UAGU ACCG CGUUACCG GG@LB@3'-UUU...CCUUU C UUA UUGUC...UUG-5'@LB@ | |@LB@ 61 38@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -22.6105 kcal/mol@LB@Unfolding Energy - mRNA 7.1744 kcal/mol@LB@Unfolding Energy - sRNA 6.61009 kcal/mol@LB@@LB@Position - mRNA 48 -- 67@LB@Position - sRNA 39 -- 60@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 104 |
0.009649 |
0.3118 |
b0910 |
cmk |
-9.70 |
0.140357 |
282 -- 294 |
41 -- 53 |
cytidylate kinase |
|
_____________281___________295\n_____________|_____________|\n5'-CCG...CGGAA___U_________AUCUGC-3'\n______________GCG_UGCAAUGGC\n______________||:_|||||||||\n______________CGU_ACGUUACCG\n3'-UUU...GUCAC___U_________GGUUG...UUG-5'\n_____________|_____________|\n_____________54____________40\n |
288 -- 294 |
41 -- 47 |
-19.191 kcal/mol |
5.61932 kcal/mol |
3.8759 kcal/mol |
281 295@LB@ | |@LB@5'-CCG...CGGAA U AUCUGC-3'@LB@ GCG UGCAAUGGC@LB@ ||: |||||||||@LB@ CGU ACGUUACCG@LB@3'-UUU...GUCAC U GGUUG...UUG-5'@LB@ | |@LB@ 54 40@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -19.191 kcal/mol@LB@Unfolding Energy - mRNA 5.61932 kcal/mol@LB@Unfolding Energy - sRNA 3.8759 kcal/mol@LB@@LB@Position - mRNA 282 -- 294@LB@Position - sRNA 41 -- 53@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 105 |
0.009758 |
0.3118 |
b4478 |
dgoD |
-14.76 |
0.009064 |
185 -- 203 |
43 -- 60 |
D-galactonate dehydratase |
|
_____________184_________________204\n_____________|___________________|\n5'-AAA...GGCGU___G__A____________AAAAU...UGA-3'\n______________AUC_AG_GGCAGUGCAAUG\n______________|||_||_||||:|||||||\n______________UAG_UC_CCGUUACGUUAC\n3'-UUU...CCUUU______A____________CGGGU...UUG-5'\n_____________|___________________|\n_____________61__________________42\n |
197 -- 203 |
43 -- 49 |
-22.2033 kcal/mol |
3.91427 kcal/mol |
3.52557 kcal/mol |
184 204@LB@ | |@LB@5'-AAA...GGCGU G A AAAAU...UGA-3'@LB@ AUC AG GGCAGUGCAAUG@LB@ ||| || ||||:|||||||@LB@ UAG UC CCGUUACGUUAC@LB@3'-UUU...CCUUU A CGGGU...UUG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -22.2033 kcal/mol@LB@Unfolding Energy - mRNA 3.91427 kcal/mol@LB@Unfolding Energy - sRNA 3.52557 kcal/mol@LB@@LB@Position - mRNA 185 -- 203@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 106 |
0.009895 |
0.3118 |
b3962 |
sthA |
-8.25 |
0.262922 |
71 -- 97 |
8 -- 33 |
pyridine nucleotide transhydrogenase soluble |
|
_____________70___________________________98\n_____________|____________________________|\n5'-UAC...GGGCA_________AACA______AGC______CGCUC...CAG-3'\n______________AAAGUAAGA_____GACAA___AAAGGC\n______________|||:|||:|_____|||||___||||||\n______________UUUUAUUUU_____CUGUU___UUUCCG\n3'-UUU...UUGUC_________AGACA_____A________UAUAUUG-5'\n_____________|____________________________|\n_____________34___________________________7\n |
73 -- 79 |
25 -- 31 |
-15.3826 kcal/mol |
2.09876 kcal/mol |
5.02883 kcal/mol |
70 98@LB@ | |@LB@5'-UAC...GGGCA AACA AGC CGCUC...CAG-3'@LB@ AAAGUAAGA GACAA AAAGGC@LB@ |||:|||:| ||||| ||||||@LB@ UUUUAUUUU CUGUU UUUCCG@LB@3'-UUU...UUGUC AGACA A UAUAUUG-5'@LB@ | |@LB@ 34 7@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -15.3826 kcal/mol@LB@Unfolding Energy - mRNA 2.09876 kcal/mol@LB@Unfolding Energy - sRNA 5.02883 kcal/mol@LB@@LB@Position - mRNA 71 -- 97@LB@Position - sRNA 8 -- 33@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 107 |
0.009921 |
0.3118 |
b0836 |
bssR |
-14.44 |
0.011050 |
12 -- 65 |
14 -- 65 |
repressor of biofilm formation by indole transport regulation |
|
_____________11____________________________________________________________66\n_____________|_____________________________________________________________|\n5'-AUU...UUACA_____G___________________A___U______UUCUG____________AUC_____CUCAU...ACA-3'\n______________GGAAA_GUCAG_GGCAG______GG_UUC_ACAGAG_____GAUAAAAUUUGU___GCAAU\n______________|||||_:||||_||||:______||_::|_|||||:_____:|||||||:|||___:||||\n______________CCUUU_UAGUC_CCGUU______CC_GGG_UGUCUU_____UUAUUUUAGACA___UGUUA\n3'-UUU...UACAA___________A_____ACGUUA______U_______________________C_______UUUCC...UUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________13\n |
46 -- 52 |
25 -- 31 |
-37.4064 kcal/mol |
11.8508 kcal/mol |
11.1173 kcal/mol |
11 66@LB@ | |@LB@5'-AUU...UUACA G A U UUCUG AUC CUCAU...ACA-3'@LB@ GGAAA GUCAG GGCAG GG UUC ACAGAG GAUAAAAUUUGU GCAAU@LB@ ||||| :|||| ||||: || ::| |||||: :|||||||:||| :||||@LB@ CCUUU UAGUC CCGUU CC GGG UGUCUU UUAUUUUAGACA UGUUA@LB@3'-UUU...UACAA A ACGUUA U C UUUCC...UUG-5'@LB@ | |@LB@ 66 13@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -37.4064 kcal/mol@LB@Unfolding Energy - mRNA 11.8508 kcal/mol@LB@Unfolding Energy - sRNA 11.1173 kcal/mol@LB@@LB@Position - mRNA 12 -- 65@LB@Position - sRNA 14 -- 65@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 25 -- 31@LB@ |
