| 79 |
0.01117 |
0.4523 |
b1593 |
ynfK |
-13.04 |
0.021217 |
188 -- 210 |
1 -- 21 |
putative dethiobiotin synthetase |
|
_____________187_____________________211\n_____________|_______________________|\n5'-CAC...AUAAC________________CUGA___GUUUC...CGG-3'\n______________GGUGGAGUUAGUGAUG____AGC\n______________::|::|||||:|||||____|||\n______________UUAUUUCAAUUACUAC____UCG\n3'-UUU...AUUAU________________UA_____-5'\n_____________|______________________|\n_____________22_____________________1\n |
197 -- 203 |
6 -- 12 |
-19.4081 kcal/mol |
6.29658 kcal/mol |
0.0669945 kcal/mol |
187 211@LB@ | |@LB@5'-CAC...AUAAC CUGA GUUUC...CGG-3'@LB@ GGUGGAGUUAGUGAUG AGC@LB@ ::|::|||||:||||| |||@LB@ UUAUUUCAAUUACUAC UCG@LB@3'-UUU...AUUAU UA -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -19.4081 kcal/mol@LB@Unfolding Energy - mRNA 6.29658 kcal/mol@LB@Unfolding Energy - sRNA 0.0669945 kcal/mol@LB@@LB@Position - mRNA 188 -- 210@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 154 |
0.02518 |
0.526 |
b1602 |
pntB |
-9.01 |
0.150855 |
190 -- 197 |
52 -- 59 |
pyridine nucleotide transhydrogenase beta subunit |
|
_____________189______198\n_____________|________|\n5'-GCU...AAUUA________CAUAU...GUA-3'\n______________AGGGGUAA\n______________||||||||\n______________UCCCCAUU\n3'-UUU...CUUUA________UGUCU...UCG-5'\n_____________|________|\n_____________60_______51\n |
191 -- 197 |
52 -- 58 |
-12.5664 kcal/mol |
3.49825 kcal/mol |
0.0599826 kcal/mol |
189 198@LB@ | |@LB@5'-GCU...AAUUA CAUAU...GUA-3'@LB@ AGGGGUAA@LB@ ||||||||@LB@ UCCCCAUU@LB@3'-UUU...CUUUA UGUCU...UCG-5'@LB@ | |@LB@ 60 51@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -12.5664 kcal/mol@LB@Unfolding Energy - mRNA 3.49825 kcal/mol@LB@Unfolding Energy - sRNA 0.0599826 kcal/mol@LB@@LB@Position - mRNA 190 -- 197@LB@Position - sRNA 52 -- 59@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 70 |
0.01004 |
0.4523 |
b1658 |
purR |
-15.06 |
0.006831 |
174 -- 223 |
1 -- 65 |
transcriptional repressor hypoxanthine-binding |
|
_____________173________________________________________________________________224\n_____________|__________________________________________________________________|\n5'-UUU...GGAGC______UA____C______GU_________G_______AAC______A__________________GAAAC...GCA-3'\n______________UGAAGU__GGGU___UGGA______GAAAU_GAAUGGC___AAUAAA__________GAUG_UAGC\n______________||||:|__||||___::||______|||||_|||||:|___||||||__________||||_||||\n______________ACUUUA__CCCA___GUCU______CUUUA_CUUACUG___UUAUUU__________CUAC_AUCG\n3'-UUU...GGCCA______UC____UUU____GUAAGU_____________CCA______AUUUCAAUUA____U____-5'\n_____________|_________________________________________________________________|\n_____________66________________________________________________________________1\n |
199 -- 205 |
29 -- 35 |
-29.7477 kcal/mol |
7.45199 kcal/mol |
7.23987 kcal/mol |
173 224@LB@ | |@LB@5'-UUU...GGAGC UA C GU G AAC A GAAAC...GCA-3'@LB@ UGAAGU GGGU UGGA GAAAU GAAUGGC AAUAAA GAUG UAGC@LB@ ||||:| |||| ::|| ||||| |||||:| |||||| |||| ||||@LB@ ACUUUA CCCA GUCU CUUUA CUUACUG UUAUUU CUAC AUCG@LB@3'-UUU...GGCCA UC UUU GUAAGU CCA AUUUCAAUUA U -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -29.7477 kcal/mol@LB@Unfolding Energy - mRNA 7.45199 kcal/mol@LB@Unfolding Energy - sRNA 7.23987 kcal/mol@LB@@LB@Position - mRNA 174 -- 223@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 40 |
0.004127 |
0.3349 |
b1659 |
ydhB |
-12.78 |
0.024485 |
130 -- 177 |
1 -- 61 |
LysR family putative transcriptional regulator |
|
_____________129_______________________________________________________________178\n_____________|_________________________________________________________________|\n5'-CGA...AAAGU______A_____AU_____________________________UU_______________C____UUCAA...UCA-3'\n______________GUAGGG_GUGAA__UAG_UGUU_____GUGAA__ACGGUAAUA___________UGAUGA_UGGU\n______________:|||||_||:||__:||_::||_____:||||__|||||||||___________||||||_|:|:\n______________UAUCCC_CAUUU__GUC_GUAA_____UACUU__UGCCAUUAU___________ACUACU_AUCG\n3'-UUU...AACUU_________________U____GUCUU_____AC_________UUAUUUCAAUU___________-5'\n_____________|________________________________________________________________|\n_____________62_______________________________________________________________1\n |
158 -- 164 |
22 -- 28 |
-31.01 kcal/mol |
11.8895 kcal/mol |
6.344 kcal/mol |
129 178@LB@ | |@LB@5'-CGA...AAAGU A AU UU C UUCAA...UCA-3'@LB@ GUAGGG GUGAA UAG UGUU GUGAA ACGGUAAUA UGAUGA UGGU@LB@ :||||| ||:|| :|| ::|| :|||| ||||||||| |||||| |:|:@LB@ UAUCCC CAUUU GUC GUAA UACUU UGCCAUUAU ACUACU AUCG@LB@3'-UUU...AACUU U GUCUU AC UUAUUUCAAUU -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -31.01 kcal/mol@LB@Unfolding Energy - mRNA 11.8895 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 130 -- 177@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 93 |
0.0151 |
0.5059 |
b1675 |
ydhZ |
-8.81 |
0.164498 |
185 -- 226 |
5 -- 54 |
uncharacterized protein |
|
_____________184________________________________________________227\n_____________|__________________________________________________|\n5'-CUU...CAUGA___________AA____UG___AAU___AC____________________ACUGU...AGC-3'\n______________UAAAUAGGUAU__AGAA__GGA___CGG____AAA_AGAG_____GAUGA\n______________||||:||::||__||||__|:|___|||____|||_|:||_____|||||\n______________AUUUGUCUGUA__UCUU__CUU___GCC____UUU_UUUC_____CUACU\n3'-UUU...UCCCC___________AG____UA___ACU___AUUA___A____AAUUA_____AUCG-5'\n_____________|__________________________________________________|\n_____________55_________________________________________________4\n |
186 -- 192 |
47 -- 53 |
-19.2855 kcal/mol |
4.14282 kcal/mol |
6.33746 kcal/mol |
184 227@LB@ | |@LB@5'-CUU...CAUGA AA UG AAU AC ACUGU...AGC-3'@LB@ UAAAUAGGUAU AGAA GGA CGG AAA AGAG GAUGA@LB@ ||||:||::|| |||| |:| ||| ||| |:|| |||||@LB@ AUUUGUCUGUA UCUU CUU GCC UUU UUUC CUACU@LB@3'-UUU...UCCCC AG UA ACU AUUA A AAUUA AUCG-5'@LB@ | |@LB@ 55 4@LB@@LB@@LB@Energy -8.81 kcal/mol@LB@Hybridization Energy -19.2855 kcal/mol@LB@Unfolding Energy - mRNA 4.14282 kcal/mol@LB@Unfolding Energy - sRNA 6.33746 kcal/mol@LB@@LB@Position - mRNA 185 -- 226@LB@Position - sRNA 5 -- 54@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 185 |
0.03096 |
0.5492 |
b1686 |
menI |
-12.09 |
0.035132 |
263 -- 300 |
22 -- 58 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________262____________________________________300\n_____________|______________________________________|\n5'-GGC...AUGGU_____UCCU_________CUU_____CAUAU________-3'\n______________GGGGU____GGAUAUUCG____UGAA_____UGGUGAUG\n______________|||||____:||:||||:____||||_____:|||:||:\n______________CCCCA____UCUGUAAGU____ACUU_____GCCAUUAU\n3'-UUU...UUUAU_____UUUG_________CUUU____ACU__________UUAUU...UCG-5'\n_____________|_______________________________________|\n_____________59______________________________________21\n |
294 -- 300 |
22 -- 28 |
-26.9755 kcal/mol |
8.57608 kcal/mol |
6.31389 kcal/mol |
262 300@LB@ | |@LB@5'-GGC...AUGGU UCCU CUU CAUAU -3'@LB@ GGGGU GGAUAUUCG UGAA UGGUGAUG@LB@ ||||| :||:||||: |||| :|||:||:@LB@ CCCCA UCUGUAAGU ACUU GCCAUUAU@LB@3'-UUU...UUUAU UUUG CUUU ACU UUAUU...UCG-5'@LB@ | |@LB@ 59 21@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -26.9755 kcal/mol@LB@Unfolding Energy - mRNA 8.57608 kcal/mol@LB@Unfolding Energy - sRNA 6.31389 kcal/mol@LB@@LB@Position - mRNA 263 -- 300@LB@Position - sRNA 22 -- 58@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 81 |
0.01129 |
0.4523 |
b1718 |
infC |
-12.35 |
0.030679 |
105 -- 150 |
1 -- 56 |
translation initiation factor IF-3 |
|
_____________104______________________________________________________151\n_____________|________________________________________________________|\n5'-UUG...GCCGU___________C________GCAUG__________________GAUC_________UGCAA...AGC-3'\n______________GGUAA__AGAC___UGGGAA_____GACG____UAAAUGAAGU____GA_GA_AGC\n______________|||||__||||___::|:||_____||||____|||||:||||____||_||_|||\n______________CCAUU__UCUG___GUCUUU_____CUGC____AUUUAUUUCA____CU_CU_UCG\n3'-UUU...UAUCC_____UG____UAA______ACUUA____CAUU__________AUUA__A__A___-5'\n_____________|_______________________________________________________|\n_____________57______________________________________________________1\n |
133 -- 139 |
14 -- 20 |
-27.0853 kcal/mol |
8.40012 kcal/mol |
6.33758 kcal/mol |
104 151@LB@ | |@LB@5'-UUG...GCCGU C GCAUG GAUC UGCAA...AGC-3'@LB@ GGUAA AGAC UGGGAA GACG UAAAUGAAGU GA GA AGC@LB@ ||||| |||| ::|:|| |||| |||||:|||| || || |||@LB@ CCAUU UCUG GUCUUU CUGC AUUUAUUUCA CU CU UCG@LB@3'-UUU...UAUCC UG UAA ACUUA CAUU AUUA A A -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -27.0853 kcal/mol@LB@Unfolding Energy - mRNA 8.40012 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 105 -- 150@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 137 |
0.02279 |
0.526 |
b1739 |
osmE |
-8.84 |
0.162198 |
202 -- 246 |
21 -- 65 |
osmotically-inducible lipoprotein |
|
_____________201____________________________________________247\n_____________|______________________________________________|\n5'-GAA...GAAUA____CA__AAUAU______A____U______C__C_______U___CCAUG...AGC-3'\n______________UGAA__AG_____GGCAGG_AUUC__GAGUG_AG_GGCGGUA_UAA\n______________||||__||_____::|||:_||||__:|:||_|:_|:|||||_|||\n______________ACUU__UC_____UUGUCU_UAAG__UUUAC_UU_CUGCCAU_AUU\n3'-UUU...GGCCA____UA__CCCAU______G____UC________A_______U___UAUUU...UCG-5'\n_____________|______________________________________________|\n_____________66_____________________________________________20\n |
236 -- 242 |
25 -- 31 |
-25.0909 kcal/mol |
9.03477 kcal/mol |
7.21767 kcal/mol |
201 247@LB@ | |@LB@5'-GAA...GAAUA CA AAUAU A U C C U CCAUG...AGC-3'@LB@ UGAA AG GGCAGG AUUC GAGUG AG GGCGGUA UAA@LB@ |||| || ::|||: |||| :|:|| |: |:||||| |||@LB@ ACUU UC UUGUCU UAAG UUUAC UU CUGCCAU AUU@LB@3'-UUU...GGCCA UA CCCAU G UC A U UAUUU...UCG-5'@LB@ | |@LB@ 66 20@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -25.0909 kcal/mol@LB@Unfolding Energy - mRNA 9.03477 kcal/mol@LB@Unfolding Energy - sRNA 7.21767 kcal/mol@LB@@LB@Position - mRNA 202 -- 246@LB@Position - sRNA 21 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 62 |
0.008588 |
0.4523 |
b1746 |
astD |
-15.44 |
0.005443 |
188 -- 231 |
17 -- 59 |
succinylglutamic semialdehyde dehydrogenase |
|
_____________187___________________________________________232\n_____________|_____________________________________________|\n5'-GCA...CGCAG___A_A__________GACUUU______UA_______C_______CGGGC...AUG-3'\n______________AGG_G_AAACAG_CAU______AUGGAU__ACGGUGA_UGGAUAA\n______________|||_|_||||||_|||______|||:||__|||||:|_|::||||\n______________UCC_C_UUUGUC_GUA______UACUUA__UGCCAUU_AUUUAUU\n3'-UUU...CUUUA___C_A______U___AGUCUU______C________________UCAAU...UCG-5'\n_____________|_____________________________________________|\n_____________60____________________________________________16\n |
217 -- 223 |
24 -- 30 |
-28.1653 kcal/mol |
6.40491 kcal/mol |
6.3229 kcal/mol |
187 232@LB@ | |@LB@5'-GCA...CGCAG A A GACUUU UA C CGGGC...AUG-3'@LB@ AGG G AAACAG CAU AUGGAU ACGGUGA UGGAUAA@LB@ ||| | |||||| ||| |||:|| |||||:| |::||||@LB@ UCC C UUUGUC GUA UACUUA UGCCAUU AUUUAUU@LB@3'-UUU...CUUUA C A U AGUCUU C UCAAU...UCG-5'@LB@ | |@LB@ 60 16@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -28.1653 kcal/mol@LB@Unfolding Energy - mRNA 6.40491 kcal/mol@LB@Unfolding Energy - sRNA 6.3229 kcal/mol@LB@@LB@Position - mRNA 188 -- 231@LB@Position - sRNA 17 -- 59@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 110 |
0.01732 |
0.5155 |
b1800 |
dmlA |
-11.31 |
0.051964 |
127 -- 183 |
1 -- 58 |
D-malate oxidase NAD-dependent; putative tartrate dehydrogenase |
|
_____________126___________________________________________________________184\n_____________|_____________________________________________________________|\n5'-GGU...GUUAC____AUU___UCCUU_____UCAAUUAUAG__________UU______C___UU_______CAGGA...GCU-3'\n______________GGGG___AAU_____UUCAG__________GAUGGUGAUG______GU_AAU__UGAUGGU\n______________||||___||:_____|||||__________||:|||:||:______||_|||__||||:|:\n______________CCCC___UUG_____AAGUC__________CUGCCAUUAU______CA_UUA__ACUAUCG\n3'-UUU...UUUAU____AU____UCUGU_____UUUACUUA____________UUAUUU__A___CU_______-5'\n_____________|____________________________________________________________|\n_____________59___________________________________________________________1\n |
177 -- 183 |
1 -- 7 |
-30.6237 kcal/mol |
12.9772 kcal/mol |
6.33758 kcal/mol |
126 184@LB@ | |@LB@5'-GGU...GUUAC AUU UCCUU UCAAUUAUAG UU C UU CAGGA...GCU-3'@LB@ GGGG AAU UUCAG GAUGGUGAUG GU AAU UGAUGGU@LB@ |||| ||: ||||| ||:|||:||: || ||| ||||:|:@LB@ CCCC UUG AAGUC CUGCCAUUAU CA UUA ACUAUCG@LB@3'-UUU...UUUAU AU UCUGU UUUACUUA UUAUUU A CU -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -30.6237 kcal/mol@LB@Unfolding Energy - mRNA 12.9772 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 127 -- 183@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 1 -- 7@LB@ |
