| 64 |
0.008913 |
0.4523 |
b4231 |
yjfF |
-11.33 |
0.051476 |
106 -- 140 |
1 -- 41 |
putative sugar ABC transporter permease |
|
_____________105_______________________________________141\n_____________|_________________________________________|\n5'-CGG...CCGCC_________CCA_______________C_____________UUUGC...GAG-3'\n______________AGAGAUGAA____GGUGGUGA___AAG__GGUGGUGGU_GC\n______________|||:|||||____|||::|:|___|||__::||:||:|_||\n______________UCUUUACUU____CCAUUAUU___UUC__UUACUACUA_CG\n3'-UUU...GUAAG_________ACUG________UAU___AA_________U__-5'\n_____________|________________________________________|\n_____________42_______________________________________1\n |
132 -- 138 |
4 -- 10 |
-27.205 kcal/mol |
9.83395 kcal/mol |
6.043 kcal/mol |
105 141@LB@ | |@LB@5'-CGG...CCGCC CCA C UUUGC...GAG-3'@LB@ AGAGAUGAA GGUGGUGA AAG GGUGGUGGU GC@LB@ |||:||||| |||::|:| ||| ::||:||:| ||@LB@ UCUUUACUU CCAUUAUU UUC UUACUACUA CG@LB@3'-UUU...GUAAG ACUG UAU AA U -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -27.205 kcal/mol@LB@Unfolding Energy - mRNA 9.83395 kcal/mol@LB@Unfolding Energy - sRNA 6.043 kcal/mol@LB@@LB@Position - mRNA 106 -- 140@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 25 |
0.00149 |
0.1957 |
b4244 |
pyrI |
-16.22 |
0.003374 |
188 -- 229 |
11 -- 59 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________187_________________________________________________230\n_____________|___________________________________________________|\n5'-UUC...CUGUA__________________________CAC___A________UGC_______AGCUA...UCA-3'\n______________AGGGG_AAAUAGA________GAUGA___ACG_UAAUAAAU___AGGUUGA\n______________|||||_|||:|||________:||||___|||_||||||||___|:|||:|\n______________UCCCC_UUUGUCU________UUACU___UGC_AUUAUUUA___UUCAAUU\n3'-UUU...CUUUA_____A_______GUAAGUCU_____UAC___C________U_________ACUAC...UCG-5'\n_____________|___________________________________________________|\n_____________60__________________________________________________10\n |
223 -- 229 |
11 -- 17 |
-28.8643 kcal/mol |
6.31236 kcal/mol |
6.33314 kcal/mol |
187 230@LB@ | |@LB@5'-UUC...CUGUA CAC A UGC AGCUA...UCA-3'@LB@ AGGGG AAAUAGA GAUGA ACG UAAUAAAU AGGUUGA@LB@ ||||| |||:||| :|||| ||| |||||||| |:|||:|@LB@ UCCCC UUUGUCU UUACU UGC AUUAUUUA UUCAAUU@LB@3'-UUU...CUUUA A GUAAGUCU UAC C U ACUAC...UCG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -28.8643 kcal/mol@LB@Unfolding Energy - mRNA 6.31236 kcal/mol@LB@Unfolding Energy - sRNA 6.33314 kcal/mol@LB@@LB@Position - mRNA 188 -- 229@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 75 |
0.01076 |
0.4523 |
b4291 |
fecA |
-8.60 |
0.179326 |
183 -- 193 |
2 -- 12 |
TonB-dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR-interacting protein |
|
_____________182_________194\n_____________|___________|\n5'-AGC...ACAAA___________GGAAG...CUG-3'\n______________AAUGAUGAUGG\n______________|||||||||:|\n______________UUACUACUAUC\n3'-UUU...UUCAA___________G-5'\n_____________|___________|\n_____________13__________1\n |
187 -- 193 |
2 -- 8 |
-12.8036 kcal/mol |
4.16536 kcal/mol |
0.0386655 kcal/mol |
182 194@LB@ | |@LB@5'-AGC...ACAAA GGAAG...CUG-3'@LB@ AAUGAUGAUGG@LB@ |||||||||:|@LB@ UUACUACUAUC@LB@3'-UUU...UUCAA G-5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.8036 kcal/mol@LB@Unfolding Energy - mRNA 4.16536 kcal/mol@LB@Unfolding Energy - sRNA 0.0386655 kcal/mol@LB@@LB@Position - mRNA 183 -- 193@LB@Position - sRNA 2 -- 12@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 14 |
0.0005823 |
0.1358 |
b4348 |
hsdS |
-17.02 |
0.002033 |
190 -- 210 |
27 -- 58 |
specificity determinant for hsdM and hsdR |
|
_____________189______________________________211\n_____________|________________________________|\n5'-CUG...UUGGU________________________________GGAAA...UAA-3'\n______________GGGGUGA__________AGGAAUGAGUG_CGG\n______________|||||:|__________||:|||||:||_|||\n______________CCCCAUU__________UCUUUACUUAC_GCC\n3'-UUU...UUUAU_______UGUCUGUAAG___________U___AUUAU...UCG-5'\n_____________|________________________________|\n_____________59_______________________________26\n |
190 -- 196 |
52 -- 58 |
-27.0928 kcal/mol |
3.78881 kcal/mol |
6.28755 kcal/mol |
189 211@LB@ | |@LB@5'-CUG...UUGGU GGAAA...UAA-3'@LB@ GGGGUGA AGGAAUGAGUG CGG@LB@ |||||:| ||:|||||:|| |||@LB@ CCCCAUU UCUUUACUUAC GCC@LB@3'-UUU...UUUAU UGUCUGUAAG U AUUAU...UCG-5'@LB@ | |@LB@ 59 26@LB@@LB@@LB@Energy -17.02 kcal/mol@LB@Hybridization Energy -27.0928 kcal/mol@LB@Unfolding Energy - mRNA 3.78881 kcal/mol@LB@Unfolding Energy - sRNA 6.28755 kcal/mol@LB@@LB@Position - mRNA 190 -- 210@LB@Position - sRNA 27 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 33 |
0.003163 |
0.3086 |
b4372 |
holD |
-10.86 |
0.064637 |
82 -- 98 |
44 -- 58 |
DNA polymerase III psi subunit |
|
_____________81________________99\n_____________|_________________|\n5'-AGG...UUGCC_______AU________GGAAU...UCC-3'\n______________GGGGUAA__GCAGACAU\n______________|||||||__:|||||||\n______________CCCCAUU__UGUCUGUA\n3'-UUU...UUUAU_________________AGUCU...UCG-5'\n_____________|_________________|\n_____________59________________43\n |
92 -- 98 |
44 -- 50 |
-21.4924 kcal/mol |
4.96784 kcal/mol |
5.66232 kcal/mol |
81 99@LB@ | |@LB@5'-AGG...UUGCC AU GGAAU...UCC-3'@LB@ GGGGUAA GCAGACAU@LB@ ||||||| :|||||||@LB@ CCCCAUU UGUCUGUA@LB@3'-UUU...UUUAU AGUCU...UCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -21.4924 kcal/mol@LB@Unfolding Energy - mRNA 4.96784 kcal/mol@LB@Unfolding Energy - sRNA 5.66232 kcal/mol@LB@@LB@Position - mRNA 82 -- 98@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 37 |
0.00362 |
0.3212 |
b4479 |
dgoR |
-15.45 |
0.005416 |
239 -- 256 |
41 -- 57 |
D-galactonate catabolism operon transcriptional repressor |
|
_____________238________________257\n_____________|__________________|\n5'-UUU...ACGCU___________U______CGGCA...AAC-3'\n______________GGGUAAACAGA_CGUUCA\n______________|||||||||||_|:||||\n______________CCCAUUUGUCU_GUAAGU\n3'-UUU...UUAUC__________________CUUUA...UCG-5'\n_____________|__________________|\n_____________58_________________40\n |
243 -- 249 |
47 -- 53 |
-24.0794 kcal/mol |
2.38777 kcal/mol |
6.24592 kcal/mol |
238 257@LB@ | |@LB@5'-UUU...ACGCU U CGGCA...AAC-3'@LB@ GGGUAAACAGA CGUUCA@LB@ ||||||||||| |:||||@LB@ CCCAUUUGUCU GUAAGU@LB@3'-UUU...UUAUC CUUUA...UCG-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -15.45 kcal/mol@LB@Hybridization Energy -24.0794 kcal/mol@LB@Unfolding Energy - mRNA 2.38777 kcal/mol@LB@Unfolding Energy - sRNA 6.24592 kcal/mol@LB@@LB@Position - mRNA 239 -- 256@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 115 |
0.01846 |
0.5155 |
b4483 |
tatD |
-10.31 |
0.084235 |
251 -- 265 |
1 -- 13 |
quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase |
|
_____________250_____________266\n_____________|_______________|\n5'-CUG...GACCG________UU_____GUGCG...UCA-3'\n______________UGAUGAUG__GUAGC\n______________|:||||||__:||||\n______________AUUACUAC__UAUCG\n3'-UUU...UUUCA_______________-5'\n_____________|______________|\n_____________14_____________1\n |
252 -- 258 |
6 -- 12 |
-13.1693 kcal/mol |
2.8194 kcal/mol |
0.0446954 kcal/mol |
250 266@LB@ | |@LB@5'-CUG...GACCG UU GUGCG...UCA-3'@LB@ UGAUGAUG GUAGC@LB@ |:|||||| :||||@LB@ AUUACUAC UAUCG@LB@3'-UUU...UUUCA -5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -13.1693 kcal/mol@LB@Unfolding Energy - mRNA 2.8194 kcal/mol@LB@Unfolding Energy - sRNA 0.0446954 kcal/mol@LB@@LB@Position - mRNA 251 -- 265@LB@Position - sRNA 1 -- 13@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 145 |
0.02447 |
0.526 |
b4518 |
ymdF |
-10.96 |
0.061577 |
258 -- 296 |
23 -- 64 |
KGG family protein |
|
_____________257________________________________________________297\n_____________|__________________________________________________|\n5'-UUU...CAUCA____C___UAAAAAA_________C___GC_____________G______UUCA-3'\n______________GAAG_AGG_______GGUGGACAG_ACA_____________GG_GGUAAU\n______________|||:_|||_______|||::||||_|||_____________|:_||||||\n______________CUUU_UCC_______CCAUUUGUC_UGU_____________CU_CCAUUA\n3'-UUU...GCCAA____A_______________________AAGUCUUUACUUA__G______UUUAU...UCG-5'\n_____________|__________________________________________________|\n_____________65_________________________________________________22\n |
275 -- 281 |
48 -- 54 |
-22.543 kcal/mol |
5.2615 kcal/mol |
6.31898 kcal/mol |
257 297@LB@ | |@LB@5'-UUU...CAUCA C UAAAAAA C GC G UUCA-3'@LB@ GAAG AGG GGUGGACAG ACA GG GGUAAU@LB@ |||: ||| |||::|||| ||| |: ||||||@LB@ CUUU UCC CCAUUUGUC UGU CU CCAUUA@LB@3'-UUU...GCCAA A AAGUCUUUACUUA G UUUAU...UCG-5'@LB@ | |@LB@ 65 22@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -22.543 kcal/mol@LB@Unfolding Energy - mRNA 5.2615 kcal/mol@LB@Unfolding Energy - sRNA 6.31898 kcal/mol@LB@@LB@Position - mRNA 258 -- 296@LB@Position - sRNA 23 -- 64@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 30 |
0.002455 |
0.2686 |
b4551 |
yheV |
-11.67 |
0.043500 |
186 -- 213 |
38 -- 63 |
DUF2387 family putative metal-binding protein |
|
_____________185__________________________214\n_____________|____________________________|\n5'-AUC...AAUUU______A_______G_U____A__C___AACGU...UUG-3'\n______________GAGUAG_GGGUAAA_A_GGCA_UC_GAA\n______________:|:|||_|||||||_|_|:||_||_|||\n______________UUUAUC_CCCAUUU_U_CUGU_AG_CUU\n3'-UUU...CCAAC______________G______A__U___UACUU...UCG-5'\n_____________|____________________________|\n_____________64___________________________37\n |
193 -- 199 |
51 -- 57 |
-22.6178 kcal/mol |
4.69416 kcal/mol |
6.25833 kcal/mol |
185 214@LB@ | |@LB@5'-AUC...AAUUU A G U A C AACGU...UUG-3'@LB@ GAGUAG GGGUAAA A GGCA UC GAA@LB@ :|:||| ||||||| | |:|| || |||@LB@ UUUAUC CCCAUUU U CUGU AG CUU@LB@3'-UUU...CCAAC G A U UACUU...UCG-5'@LB@ | |@LB@ 64 37@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -22.6178 kcal/mol@LB@Unfolding Energy - mRNA 4.69416 kcal/mol@LB@Unfolding Energy - sRNA 6.25833 kcal/mol@LB@@LB@Position - mRNA 186 -- 213@LB@Position - sRNA 38 -- 63@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 5 |
3.022e-05 |
0.01984 |
b4553 |
ysaB |
-16.91 |
0.002179 |
166 -- 209 |
3 -- 54 |
uncharacterized protein |
|
_____________165__________________________________________________210\n_____________|____________________________________________________|\n5'-UCA...AUAAA___UA____UCACCUGCAAACCA_____________________________AACGC...AUC-3'\n______________UAA__AGAC______________GACGGUAAU________UUAAUGAUGAUG\n______________|||__||||______________|||||||||________|||||||||||:\n______________AUU__UCUG______________CUGCCAUUA________AAUUACUACUAU\n3'-UUU...UCCCC___UG____UAAGUCUUUACUUA_________UUUAUUUC____________CG-5'\n_____________|____________________________________________________|\n_____________55___________________________________________________2\n |
203 -- 209 |
3 -- 9 |
-28.2861 kcal/mol |
5.03949 kcal/mol |
6.3375 kcal/mol |
165 210@LB@ | |@LB@5'-UCA...AUAAA UA UCACCUGCAAACCA AACGC...AUC-3'@LB@ UAA AGAC GACGGUAAU UUAAUGAUGAUG@LB@ ||| |||| ||||||||| |||||||||||:@LB@ AUU UCUG CUGCCAUUA AAUUACUACUAU@LB@3'-UUU...UCCCC UG UAAGUCUUUACUUA UUUAUUUC CG-5'@LB@ | |@LB@ 55 2@LB@@LB@@LB@Energy -16.91 kcal/mol@LB@Hybridization Energy -28.2861 kcal/mol@LB@Unfolding Energy - mRNA 5.03949 kcal/mol@LB@Unfolding Energy - sRNA 6.3375 kcal/mol@LB@@LB@Position - mRNA 166 -- 209@LB@Position - sRNA 3 -- 54@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 3 -- 9@LB@ |
