11 |
0.0003561 |
0.1063 |
b3857 |
mobA |
-16.95 |
0.002119 |
239 -- 276 |
15 -- 59 |
molybdopterin-guanine dinucleotide synthase |
|
_____________238_______________________________________________277\n_____________|_________________________________________________|\n5'-UCC...CUGGC___C______GC___________________G_____C___________GAUUG...AAC-3'\n______________AGG_GGUAAA__CAGAC__________GAAU_GGCGG__GUAGAUAAAG\n______________|||_||||||__|||||__________||||_|:|||__:||:||||||\n______________UCC_CCAUUU__GUCUG__________CUUA_CUGCC__UAUUUAUUUC\n3'-UUU...CUUUA_________________UAAGUCUUUA__________AU__________AAUUA...UCG-5'\n_____________|_________________________________________________|\n_____________60________________________________________________14\n |
270 -- 276 |
15 -- 21 |
-31.2728 kcal/mol |
7.99479 kcal/mol |
6.32587 kcal/mol |
238 277@LB@ | |@LB@5'-UCC...CUGGC C GC G C GAUUG...AAC-3'@LB@ AGG GGUAAA CAGAC GAAU GGCGG GUAGAUAAAG@LB@ ||| |||||| ||||| |||| |:||| :||:||||||@LB@ UCC CCAUUU GUCUG CUUA CUGCC UAUUUAUUUC@LB@3'-UUU...CUUUA UAAGUCUUUA AU AAUUA...UCG-5'@LB@ | |@LB@ 60 14@LB@@LB@@LB@Energy -16.95 kcal/mol@LB@Hybridization Energy -31.2728 kcal/mol@LB@Unfolding Energy - mRNA 7.99479 kcal/mol@LB@Unfolding Energy - sRNA 6.32587 kcal/mol@LB@@LB@Position - mRNA 239 -- 276@LB@Position - sRNA 15 -- 59@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 15 -- 21@LB@ |
178 |
0.02931 |
0.5406 |
b3858 |
yihD |
-11.25 |
0.053413 |
186 -- 232 |
8 -- 55 |
DUF1040 protein YihD |
|
_____________185__________________________________________________233\n_____________|____________________________________________________|\n5'-AUA...CAAGA_____G_________CUAU______UAA____UC______________U___ACUCC...CGA-3'\n______________GUAAG_AG_CA_UCA____GAAAUG____ACG____UGAAUGAAGUUA_UGA\n______________||||:_||_||_|||____||||||____|||____|:|||:||||||_|||\n______________CAUUU_UC_GU_AGU____CUUUAC____UGC____AUUUAUUUCAAU_ACU\n3'-UUU...AUCCC_____G__U__A_____________UUAC___CAUU____________U___ACUAUCG-5'\n_____________|____________________________________________________|\n_____________56___________________________________________________7\n |
222 -- 228 |
12 -- 18 |
-26.8405 kcal/mol |
9.25239 kcal/mol |
6.33488 kcal/mol |
185 233@LB@ | |@LB@5'-AUA...CAAGA G CUAU UAA UC U ACUCC...CGA-3'@LB@ GUAAG AG CA UCA GAAAUG ACG UGAAUGAAGUUA UGA@LB@ ||||: || || ||| |||||| ||| |:|||:|||||| |||@LB@ CAUUU UC GU AGU CUUUAC UGC AUUUAUUUCAAU ACU@LB@3'-UUU...AUCCC G U A UUAC CAUU U ACUAUCG-5'@LB@ | |@LB@ 56 7@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -26.8405 kcal/mol@LB@Unfolding Energy - mRNA 9.25239 kcal/mol@LB@Unfolding Energy - sRNA 6.33488 kcal/mol@LB@@LB@Position - mRNA 186 -- 232@LB@Position - sRNA 8 -- 55@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 12 -- 18@LB@ |
199 |
0.03375 |
0.5555 |
b3860 |
dsbA |
-9.14 |
0.142422 |
273 -- 281 |
48 -- 56 |
periplasmic protein disulfide isomerase I |
|
_____________272_______282\n_____________|_________|\n5'-UUU...AAGAU_________UACAC...AAC-3'\n______________GGUAAACAG\n______________|||||||||\n______________CCAUUUGUC\n3'-UUU...UAUCC_________UGUAA...UCG-5'\n_____________|_________|\n_____________57________47\n |
275 -- 281 |
48 -- 54 |
-12.2563 kcal/mol |
1.07557 kcal/mol |
2.03935 kcal/mol |
272 282@LB@ | |@LB@5'-UUU...AAGAU UACAC...AAC-3'@LB@ GGUAAACAG@LB@ |||||||||@LB@ CCAUUUGUC@LB@3'-UUU...UAUCC UGUAA...UCG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -12.2563 kcal/mol@LB@Unfolding Energy - mRNA 1.07557 kcal/mol@LB@Unfolding Energy - sRNA 2.03935 kcal/mol@LB@@LB@Position - mRNA 273 -- 281@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 48 -- 54@LB@ |
113 |
0.01802 |
0.5155 |
b3910 |
yiiM |
-13.90 |
0.013248 |
191 -- 239 |
40 -- 92 |
6-N-hydroxylaminopurine resistance protein |
|
_____________190______________________________________________________240\n_____________|________________________________________________________|\n5'-UAA...GUGGA________A_____________________U_________C_______AGA_____GCUUA...UGC-3'\n______________GAGGGAAC__GAUGCGA__UAUCCGGUUGA_GUA____UA_ACAGGCA___UUCAG\n______________:|:::|||__:||||||__:||||||||||_:||____||_||||:||___|||||\n______________UUUUUUUG__UUACGCU__GUAGGCCAACU_UAU____AU_UGUCUGU___AAGUC\n__________3'-U________GC_______CC___________U___CCCC__U_______________UUUAC...UCG-5'\n_____________|________________________________________________________|\n_____________93_______________________________________________________39\n |
225 -- 231 |
45 -- 51 |
-43.4237 kcal/mol |
10.1845 kcal/mol |
19.3361 kcal/mol |
190 240@LB@ | |@LB@5'-UAA...GUGGA A U C AGA GCUUA...UGC-3'@LB@ GAGGGAAC GAUGCGA UAUCCGGUUGA GUA UA ACAGGCA UUCAG@LB@ :|:::||| :|||||| :|||||||||| :|| || ||||:|| |||||@LB@ UUUUUUUG UUACGCU GUAGGCCAACU UAU AU UGUCUGU AAGUC@LB@ 3'-U GC CC U CCCC U UUUAC...UCG-5'@LB@ | |@LB@ 93 39@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -43.4237 kcal/mol@LB@Unfolding Energy - mRNA 10.1845 kcal/mol@LB@Unfolding Energy - sRNA 19.3361 kcal/mol@LB@@LB@Position - mRNA 191 -- 239@LB@Position - sRNA 40 -- 92@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 45 -- 51@LB@ |
60 |
0.008489 |
0.4523 |
b3912 |
cpxR |
-10.34 |
0.082729 |
218 -- 229 |
5 -- 16 |
response regulator in two-component regulatory system with CpxA |
|
_____________217__________230\n_____________|____________|\n5'-UGA...CUGUU____________CCGAG...AUG-3'\n______________AGUUGAUGAUGA\n______________||||:|||||||\n______________UCAAUUACUACU\n3'-UUU...UUAUU____________AUCG-5'\n_____________|____________|\n_____________17___________4\n |
223 -- 229 |
5 -- 11 |
-14.1725 kcal/mol |
3.78244 kcal/mol |
0.0462955 kcal/mol |
217 230@LB@ | |@LB@5'-UGA...CUGUU CCGAG...AUG-3'@LB@ AGUUGAUGAUGA@LB@ ||||:|||||||@LB@ UCAAUUACUACU@LB@3'-UUU...UUAUU AUCG-5'@LB@ | |@LB@ 17 4@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -14.1725 kcal/mol@LB@Unfolding Energy - mRNA 3.78244 kcal/mol@LB@Unfolding Energy - sRNA 0.0462955 kcal/mol@LB@@LB@Position - mRNA 218 -- 229@LB@Position - sRNA 5 -- 16@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 5 -- 11@LB@ |
198 |
0.03373 |
0.5555 |
b3915 |
fieF |
-7.92 |
0.235762 |
278 -- 297 |
1 -- 19 |
ferrous iron and zinc transporter |
|
_____________277__________________298\n_____________|____________________|\n5'-AAA...CUGAU____A__UU__C________AUA-3'\n______________UAAA_UU__UG_AUGGUGGU\n______________||||_||__||_|||:|:|:\n______________AUUU_AA__AC_UACUAUCG\n3'-UUU...UAUUU____C__UU___________-5'\n_____________|___________________|\n_____________20__________________1\n |
291 -- 297 |
1 -- 7 |
-10.0103 kcal/mol |
2.02347 kcal/mol |
0.0638423 kcal/mol |
277 298@LB@ | |@LB@5'-AAA...CUGAU A UU C AUA-3'@LB@ UAAA UU UG AUGGUGGU@LB@ |||| || || |||:|:|:@LB@ AUUU AA AC UACUAUCG@LB@3'-UUU...UAUUU C UU -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -10.0103 kcal/mol@LB@Unfolding Energy - mRNA 2.02347 kcal/mol@LB@Unfolding Energy - sRNA 0.0638423 kcal/mol@LB@@LB@Position - mRNA 278 -- 297@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 1 -- 7@LB@ |
94 |
0.01566 |
0.5059 |
b3918 |
cdh |
-10.38 |
0.081442 |
225 -- 238 |
1 -- 14 |
CDP-diacylglycerol phosphotidylhydrolase |
|
_____________224____________239\n_____________|______________|\n5'-AUU...UUUUU______________UAUCG...CAU-3'\n______________UUGGUGAUGAUAGU\n______________||::|||||||||:\n______________AAUUACUACUAUCG\n3'-UUU...AUUUC______________-5'\n_____________|_____________|\n_____________15____________1\n |
232 -- 238 |
1 -- 7 |
-16.1883 kcal/mol |
5.76383 kcal/mol |
0.0473494 kcal/mol |
224 239@LB@ | |@LB@5'-AUU...UUUUU UAUCG...CAU-3'@LB@ UUGGUGAUGAUAGU@LB@ ||::|||||||||:@LB@ AAUUACUACUAUCG@LB@3'-UUU...AUUUC -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -10.38 kcal/mol@LB@Hybridization Energy -16.1883 kcal/mol@LB@Unfolding Energy - mRNA 5.76383 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 225 -- 238@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 1 -- 7@LB@ |
17 |
0.000872 |
0.1482 |
b3940 |
metL |
-12.03 |
0.036099 |
191 -- 199 |
51 -- 59 |
Bifunctional aspartokinase/homoserine dehydrogenase 2 |
|
_____________190_______200\n_____________|_________|\n5'-ACG...AAACA_________AAUGA...GCA-3'\n______________AGGGGUAAA\n______________|||||||||\n______________UCCCCAUUU\n3'-UUU...CUUUA_________GUCUG...UCG-5'\n_____________|_________|\n_____________60________50\n |
193 -- 199 |
51 -- 57 |
-13.5839 kcal/mol |
1.01846 kcal/mol |
0.532875 kcal/mol |
190 200@LB@ | |@LB@5'-ACG...AAACA AAUGA...GCA-3'@LB@ AGGGGUAAA@LB@ |||||||||@LB@ UCCCCAUUU@LB@3'-UUU...CUUUA GUCUG...UCG-5'@LB@ | |@LB@ 60 50@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -13.5839 kcal/mol@LB@Unfolding Energy - mRNA 1.01846 kcal/mol@LB@Unfolding Energy - sRNA 0.532875 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 51 -- 59@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 51 -- 57@LB@ |
139 |
0.0229 |
0.526 |
b3958 |
argC |
-10.25 |
0.086580 |
11 -- 36 |
23 -- 56 |
N-acetyl-gamma-glutamylphosphate reductase NAD(P)-binding |
|
_____________10___________________________________37\n_____________|____________________________________|\n5'-AUC...AGCGC_______CUC__________________________UUGUU...CUG-3'\n______________GGUAAAU___GAUA__________AAUGGCGGUAAU\n______________||||||:___||:|__________||||:|||||||\n______________CCAUUUG___CUGU__________UUACUGCCAUUA\n3'-UUU...UAUCC_______U______AAGUCUUUAC____________UUUAU...UCG-5'\n_____________|____________________________________|\n_____________57___________________________________22\n |
30 -- 36 |
23 -- 29 |
-21.8632 kcal/mol |
5.30467 kcal/mol |
6.31216 kcal/mol |
10 37@LB@ | |@LB@5'-AUC...AGCGC CUC UUGUU...CUG-3'@LB@ GGUAAAU GAUA AAUGGCGGUAAU@LB@ ||||||: ||:| ||||:|||||||@LB@ CCAUUUG CUGU UUACUGCCAUUA@LB@3'-UUU...UAUCC U AAGUCUUUAC UUUAU...UCG-5'@LB@ | |@LB@ 57 22@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -21.8632 kcal/mol@LB@Unfolding Energy - mRNA 5.30467 kcal/mol@LB@Unfolding Energy - sRNA 6.31216 kcal/mol@LB@@LB@Position - mRNA 11 -- 36@LB@Position - sRNA 23 -- 56@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 23 -- 29@LB@ |
19 |
0.0008973 |
0.1482 |
b3964 |
yijD |
-17.08 |
0.001951 |
152 -- 223 |
2 -- 55 |
DUF1422 family inner membrane protein |
|
_____________151______________________________________________________________________224\n_____________|________________________________________________________________________|\n5'-ACU...UCGCC______A___GAAAACCGCAAU_____CG_______UGAAG____A________AC___CA___CAA_____AGGUA...UGC-3'\n______________GUGAAC_AGA____________UAUUC__GGAAAUG_____GACG_GUAAUGAA__AAG__AAU___GAUAG\n______________||:|||_|||____________:||||__:||||||_____||||_|||||:||__|||__|||___|||||\n______________CAUUUG_UCU____________GUAAG__UCUUUAC_____CUGC_CAUUAUUU__UUC__UUA___CUAUC\n3'-UUU...AUCCC____________________________________UUA_______________AU___AA___CUA_____G-5'\n_____________|________________________________________________________________________|\n_____________56_______________________________________________________________________1\n |
199 -- 205 |
20 -- 26 |
-31.4266 kcal/mol |
8.00944 kcal/mol |
6.33752 kcal/mol |
151 224@LB@ | |@LB@5'-ACU...UCGCC A GAAAACCGCAAU CG UGAAG A AC CA CAA AGGUA...UGC-3'@LB@ GUGAAC AGA UAUUC GGAAAUG GACG GUAAUGAA AAG AAU GAUAG@LB@ ||:||| ||| :|||| :|||||| |||| |||||:|| ||| ||| |||||@LB@ CAUUUG UCU GUAAG UCUUUAC CUGC CAUUAUUU UUC UUA CUAUC@LB@3'-UUU...AUCCC UUA AU AA CUA G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -17.08 kcal/mol@LB@Hybridization Energy -31.4266 kcal/mol@LB@Unfolding Energy - mRNA 8.00944 kcal/mol@LB@Unfolding Energy - sRNA 6.33752 kcal/mol@LB@@LB@Position - mRNA 152 -- 223@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 20 -- 26@LB@ |