| 28 |
0.00198 |
0.2275 |
b2821 |
ptrA |
-8.02 |
0.226801 |
174 -- 191 |
5 -- 22 |
protease III |
|
_____________173________________192\n_____________|__________________|\n5'-GCU...ACAGA____U________U____GGUCC...CCA-3'\n______________AAAU_AAGUUGAU_AUGA\n______________||||_|||||:||_||||\n______________UUUA_UUCAAUUA_UACU\n3'-UUU...CAUUA____U________C____AUCG-5'\n_____________|__________________|\n_____________23_________________4\n |
180 -- 186 |
10 -- 16 |
-10.4485 kcal/mol |
2.32937 kcal/mol |
0.0977783 kcal/mol |
173 192@LB@ | |@LB@5'-GCU...ACAGA U U GGUCC...CCA-3'@LB@ AAAU AAGUUGAU AUGA@LB@ |||| |||||:|| ||||@LB@ UUUA UUCAAUUA UACU@LB@3'-UUU...CAUUA U C AUCG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -10.4485 kcal/mol@LB@Unfolding Energy - mRNA 2.32937 kcal/mol@LB@Unfolding Energy - sRNA 0.0977783 kcal/mol@LB@@LB@Position - mRNA 174 -- 191@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 67 |
0.009794 |
0.4523 |
b2823 |
ppdC |
-12.40 |
0.029910 |
245 -- 275 |
3 -- 28 |
putative prepilin peptidase-dependent protein |
|
_____________244_____________________________276\n_____________|_______________________________|\n5'-ACG...CCGGA_______UUGGC_____U_____________AUUGU...UCC-3'\n______________GGUAAUG_____GAUGG_GUUGAUGGUGAUG\n______________||||||:_____:||::_|||:|||:||||:\n______________CCAUUAU_____UUAUU_CAAUUACUACUAU\n3'-UUU...UACUG_________________U_____________CG-5'\n_____________|_______________________________|\n_____________29______________________________2\n |
269 -- 275 |
3 -- 9 |
-21.5159 kcal/mol |
8.35299 kcal/mol |
0.766561 kcal/mol |
244 276@LB@ | |@LB@5'-ACG...CCGGA UUGGC U AUUGU...UCC-3'@LB@ GGUAAUG GAUGG GUUGAUGGUGAUG@LB@ ||||||: :||:: |||:|||:||||:@LB@ CCAUUAU UUAUU CAAUUACUACUAU@LB@3'-UUU...UACUG U CG-5'@LB@ | |@LB@ 29 2@LB@@LB@@LB@Energy -12.40 kcal/mol@LB@Hybridization Energy -21.5159 kcal/mol@LB@Unfolding Energy - mRNA 8.35299 kcal/mol@LB@Unfolding Energy - sRNA 0.766561 kcal/mol@LB@@LB@Position - mRNA 245 -- 275@LB@Position - sRNA 3 -- 28@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 147 |
0.02463 |
0.526 |
b2830 |
rppH |
-8.72 |
0.170707 |
205 -- 218 |
1 -- 14 |
RNA pyrophosphohydrolase |
|
_____________204____________219\n_____________|______________|\n5'-UUC...GGUGA_______C______UACCG...GGC-3'\n______________UUGAUGA_GAUGGC\n______________||:||||_|||:||\n______________AAUUACU_CUAUCG\n3'-UUU...AUUUC_______A______-5'\n_____________|_____________|\n_____________15____________1\n |
205 -- 211 |
8 -- 14 |
-13.7427 kcal/mol |
4.97796 kcal/mol |
0.0473494 kcal/mol |
204 219@LB@ | |@LB@5'-UUC...GGUGA C UACCG...GGC-3'@LB@ UUGAUGA GAUGGC@LB@ ||:|||| |||:||@LB@ AAUUACU CUAUCG@LB@3'-UUU...AUUUC A -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -13.7427 kcal/mol@LB@Unfolding Energy - mRNA 4.97796 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 205 -- 218@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 53 |
0.006355 |
0.3902 |
b2916 |
argP |
-17.11 |
0.001913 |
217 -- 267 |
1 -- 51 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________216____________________________________________________268\n_____________|______________________________________________________|\n5'-GGC...GGACU____A_____A____CAC_______________C_____CGAG_____UUG___GCGCG...CAG-3'\n______________ACAG_ACAUU_CAGG___UGGAUG_CGGUGAUA_GUGAA______GAU___AGC\n______________||||_|||||_|||:___||:|||_||||:|||_:|:||______|||___|||\n______________UGUC_UGUAA_GUCU___ACUUAC_GCCAUUAU_UAUUU______CUA___UCG\n3'-UUU...CCAUU_______________UU_______U________U_____CAAUUA___CUA___-5'\n_____________|_____________________________________________________|\n_____________52____________________________________________________1\n |
242 -- 248 |
22 -- 28 |
-33.3201 kcal/mol |
9.87503 kcal/mol |
6.33528 kcal/mol |
216 268@LB@ | |@LB@5'-GGC...GGACU A A CAC C CGAG UUG GCGCG...CAG-3'@LB@ ACAG ACAUU CAGG UGGAUG CGGUGAUA GUGAA GAU AGC@LB@ |||| ||||| |||: ||:||| ||||:||| :|:|| ||| |||@LB@ UGUC UGUAA GUCU ACUUAC GCCAUUAU UAUUU CUA UCG@LB@3'-UUU...CCAUU UU U U CAAUUA CUA -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -33.3201 kcal/mol@LB@Unfolding Energy - mRNA 9.87503 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 217 -- 267@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 127 |
0.01998 |
0.5155 |
b2922 |
yggE |
-8.69 |
0.172995 |
232 -- 253 |
1 -- 26 |
oxidative stress defense protein |
|
_____________231________________________254\n_____________|__________________________|\n5'-GCA...GGCAU________________C_________AGCGC...CCG-3'\n______________UAAUGGGUA___UUAG_GG_GAUGGC\n______________||||:::||___|||:_|:_|||:||\n______________AUUAUUUAU___AAUU_CU_CUAUCG\n3'-UUU...CUGCC_________UUC____A__A______-5'\n_____________|_________________________|\n_____________27________________________1\n |
234 -- 240 |
18 -- 24 |
-12.7828 kcal/mol |
3.51669 kcal/mol |
0.580494 kcal/mol |
231 254@LB@ | |@LB@5'-GCA...GGCAU C AGCGC...CCG-3'@LB@ UAAUGGGUA UUAG GG GAUGGC@LB@ ||||:::|| |||: |: |||:||@LB@ AUUAUUUAU AAUU CU CUAUCG@LB@3'-UUU...CUGCC UUC A A -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -8.69 kcal/mol@LB@Hybridization Energy -12.7828 kcal/mol@LB@Unfolding Energy - mRNA 3.51669 kcal/mol@LB@Unfolding Energy - sRNA 0.580494 kcal/mol@LB@@LB@Position - mRNA 232 -- 253@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 117 |
0.01855 |
0.5155 |
b3011 |
yqhD |
-12.43 |
0.029448 |
82 -- 109 |
34 -- 64 |
aldehyde reductase NADPH-dependent |
|
_____________81________________________________110\n_____________|_________________________________|\n5'-GUU...CUGGA________CA____________GG_________GCAUU...UGA-3'\n______________GAAAUAGG_______AGACAUU__CAGAAAUGA\n______________||||||||_______|||||||__|||||||||\n______________CUUUAUCC_______UCUGUAA__GUCUUUACU\n3'-UUU...GCCAA________CCAUUUG__________________UACUG...UCG-5'\n_____________|_________________________________|\n_____________65________________________________33\n |
83 -- 89 |
57 -- 63 |
-24.9555 kcal/mol |
6.2587 kcal/mol |
6.27071 kcal/mol |
81 110@LB@ | |@LB@5'-GUU...CUGGA CA GG GCAUU...UGA-3'@LB@ GAAAUAGG AGACAUU CAGAAAUGA@LB@ |||||||| ||||||| |||||||||@LB@ CUUUAUCC UCUGUAA GUCUUUACU@LB@3'-UUU...GCCAA CCAUUUG UACUG...UCG-5'@LB@ | |@LB@ 65 33@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -24.9555 kcal/mol@LB@Unfolding Energy - mRNA 6.2587 kcal/mol@LB@Unfolding Energy - sRNA 6.27071 kcal/mol@LB@@LB@Position - mRNA 82 -- 109@LB@Position - sRNA 34 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 114 |
0.01806 |
0.5155 |
b3033 |
yqiB |
-9.53 |
0.119911 |
174 -- 206 |
15 -- 50 |
DUF1249 protein YqiB |
|
_____________173__________________________________207\n_____________|____________________________________|\n5'-UGG...AUCAU__A_____AAA_____________C___________CGUUA...GCG-3'\n______________CA_GCGUU___AAAUGAGUG__GG__AUAAAUGAAG\n______________||_:|:||___||||||:||__||__||||||:|||\n______________GU_UGUAA___UUUACUUAC__CC__UAUUUAUUUC\n3'-UUU...CAUUU__C_____GUC_________UG__AU__________AAUUA...UCG-5'\n_____________|____________________________________|\n_____________51___________________________________14\n |
200 -- 206 |
15 -- 21 |
-20.8588 kcal/mol |
5.00376 kcal/mol |
6.32253 kcal/mol |
173 207@LB@ | |@LB@5'-UGG...AUCAU A AAA C CGUUA...GCG-3'@LB@ CA GCGUU AAAUGAGUG GG AUAAAUGAAG@LB@ || :|:|| ||||||:|| || ||||||:|||@LB@ GU UGUAA UUUACUUAC CC UAUUUAUUUC@LB@3'-UUU...CAUUU C GUC UG AU AAUUA...UCG-5'@LB@ | |@LB@ 51 14@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -20.8588 kcal/mol@LB@Unfolding Energy - mRNA 5.00376 kcal/mol@LB@Unfolding Energy - sRNA 6.32253 kcal/mol@LB@@LB@Position - mRNA 174 -- 206@LB@Position - sRNA 15 -- 50@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 27 |
0.001735 |
0.211 |
b3052 |
hldE |
-15.91 |
0.004078 |
227 -- 261 |
1 -- 47 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________226______________________________________________262\n_____________|________________________________________________|\n5'-GCG...UUUGA____G_____________________________________UGAU__UGGAU...CGC-3'\n______________ACGU_CAG____GAGUGAUGGU_________GGUUGGUGAUG____GC\n______________||:|_|||____||:|||:|||_________:|||::|||||____||\n______________UGUA_GUC____CUUACUGCCA_________UCAAUUACUAC____CG\n3'-UUU...UUGUC____A___UUUA__________UUAUUUAUU___________UAU___-5'\n_____________|_______________________________________________|\n_____________48______________________________________________1\n |
249 -- 255 |
6 -- 12 |
-30.7414 kcal/mol |
8.50852 kcal/mol |
6.32011 kcal/mol |
226 262@LB@ | |@LB@5'-GCG...UUUGA G UGAU UGGAU...CGC-3'@LB@ ACGU CAG GAGUGAUGGU GGUUGGUGAUG GC@LB@ ||:| ||| ||:|||:||| :|||::||||| ||@LB@ UGUA GUC CUUACUGCCA UCAAUUACUAC CG@LB@3'-UUU...UUGUC A UUUA UUAUUUAUU UAU -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -30.7414 kcal/mol@LB@Unfolding Energy - mRNA 8.50852 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 227 -- 261@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 104 |
0.01633 |
0.5059 |
b3057 |
bacA |
-10.04 |
0.095309 |
188 -- 194 |
54 -- 60 |
undecaprenyl pyrophosphate phosphatase |
|
_____________187_____195\n_____________|_______|\n5'-UUC...UAAUU_______UUAUU...UUG-3'\n______________UAGGGGU\n______________|||||||\n______________AUCCCCA\n3'-UUU...ACUUU_______UUUGU...UCG-5'\n_____________|_______|\n_____________61______53\n |
188 -- 194 |
54 -- 60 |
-11.2865 kcal/mol |
1.18126 kcal/mol |
0.0661814 kcal/mol |
187 195@LB@ | |@LB@5'-UUC...UAAUU UUAUU...UUG-3'@LB@ UAGGGGU@LB@ |||||||@LB@ AUCCCCA@LB@3'-UUU...ACUUU UUUGU...UCG-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -11.2865 kcal/mol@LB@Unfolding Energy - mRNA 1.18126 kcal/mol@LB@Unfolding Energy - sRNA 0.0661814 kcal/mol@LB@@LB@Position - mRNA 188 -- 194@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 84 |
0.01184 |
0.4627 |
b3101 |
yqjF |
-11.66 |
0.043663 |
211 -- 235 |
1 -- 23 |
putative quinol oxidase subunit |
|
_____________210_______________________236\n_____________|_________________________|\n5'-CAG...AAAAU____A__U_______UAC_______GCGCA...GUA-3'\n______________UAGA_GA_GUUGGUG___UGGUAGC\n______________||:|_:|_|||::||___||:||||\n______________AUUU_UU_CAAUUAC___ACUAUCG\n3'-UUU...CCAUU____A__U_______U_________-5'\n_____________|________________________|\n_____________24_______________________1\n |
229 -- 235 |
1 -- 7 |
-15.9826 kcal/mol |
4.21954 kcal/mol |
0.105066 kcal/mol |
210 236@LB@ | |@LB@5'-CAG...AAAAU A U UAC GCGCA...GUA-3'@LB@ UAGA GA GUUGGUG UGGUAGC@LB@ ||:| :| |||::|| ||:||||@LB@ AUUU UU CAAUUAC ACUAUCG@LB@3'-UUU...CCAUU A U U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -15.9826 kcal/mol@LB@Unfolding Energy - mRNA 4.21954 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 211 -- 235@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
