| 142 |
0.02395 |
0.526 |
b0192 |
nlpE |
-14.44 |
0.009771 |
167 -- 226 |
1 -- 55 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-UCA...GCAAA___C_______G________AAAAAGAAG____G________AA_______C____A____C___GAUGG...CGC-3'\n______________GUG_GCAG_CG_UCGGGAAU_________GAAU_GAUGGUGA_____AAAG__GAU_GUGA_AGC\n______________||:_:|||_|:_||:|:|||_________||||_||:|||:|_____||||__:||_:|||_|||\n______________CAU_UGUC_GU_AGUCUUUA_________CUUA_CUGCCAUU_____UUUC__UUA_UACU_UCG\n3'-UUU...AUCCC___U____U__A______________________________AUUUA____AA___C____A___-5'\n_____________|________________________________________________________________|\n_____________56_______________________________________________________________1\n |
201 -- 207 |
24 -- 30 |
-31.0616 kcal/mol |
10.2836 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-UCA...GCAAA C G AAAAAGAAG G AA C A C GAUGG...CGC-3'@LB@ GUG GCAG CG UCGGGAAU GAAU GAUGGUGA AAAG GAU GUGA AGC@LB@ ||: :||| |: ||:|:||| |||| ||:|||:| |||| :|| :||| |||@LB@ CAU UGUC GU AGUCUUUA CUUA CUGCCAUU UUUC UUA UACU UCG@LB@3'-UUU...AUCCC U U A AUUUA AA C A -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -31.0616 kcal/mol@LB@Unfolding Energy - mRNA 10.2836 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 23 |
0.001279 |
0.1825 |
b0199 |
metN |
-18.57 |
0.000714 |
152 -- 205 |
7 -- 50 |
DL-methionine transporter subunit |
|
_____________151_______________________________________________________206\n_____________|_________________________________________________________|\n5'-CGC...CGUUU________________CCACGACUAACUU_______A__________UC________AAAAC...UUU-3'\n______________CAGGCAUUC_GAGAUG_____________AAUGACG_UAAUAAAUAA____AAUGAU\n______________|||:|||||_||:|||_____________|||||||_||||||||||____||||||\n______________GUCUGUAAG_CUUUAC_____________UUACUGC_AUUAUUUAUU____UUACUA\n3'-UUU...CAUUU_________U__________________________C__________UCAA______CUAUCG-5'\n_____________|_________________________________________________________|\n_____________51________________________________________________________6\n |
191 -- 197 |
17 -- 23 |
-35.1892 kcal/mol |
10.2873 kcal/mol |
6.33206 kcal/mol |
151 206@LB@ | |@LB@5'-CGC...CGUUU CCACGACUAACUU A UC AAAAC...UUU-3'@LB@ CAGGCAUUC GAGAUG AAUGACG UAAUAAAUAA AAUGAU@LB@ |||:||||| ||:||| ||||||| |||||||||| ||||||@LB@ GUCUGUAAG CUUUAC UUACUGC AUUAUUUAUU UUACUA@LB@3'-UUU...CAUUU U C UCAA CUAUCG-5'@LB@ | |@LB@ 51 6@LB@@LB@@LB@Energy -18.57 kcal/mol@LB@Hybridization Energy -35.1892 kcal/mol@LB@Unfolding Energy - mRNA 10.2873 kcal/mol@LB@Unfolding Energy - sRNA 6.33206 kcal/mol@LB@@LB@Position - mRNA 152 -- 205@LB@Position - sRNA 7 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 80 |
0.01119 |
0.4523 |
b0241 |
phoE |
-11.22 |
0.054424 |
189 -- 234 |
2 -- 43 |
outer membrane phosphoporin protein E |
|
_____________188____________________________________________235\n_____________|______________________________________________|\n5'-AGC...UAAAA__________AA____AAAAGAGCACUCU__CA_____________GCAUU...AUG-3'\n______________UCAGGAAUGA__AUGA_____________GG__UUAGUGGUGAUGG\n______________||||:|||||__||||_____________:|__|||:||:||||:|\n______________AGUCUUUACU__UACU_____________UC__AAUUACUACUAUC\n3'-UUU...CUGUA________________GCCAUUAUUUAUU_________________G-5'\n_____________|______________________________________________|\n_____________44_____________________________________________1\n |
228 -- 234 |
2 -- 8 |
-27.55 kcal/mol |
10.0434 kcal/mol |
6.29139 kcal/mol |
188 235@LB@ | |@LB@5'-AGC...UAAAA AA AAAAGAGCACUCU CA GCAUU...AUG-3'@LB@ UCAGGAAUGA AUGA GG UUAGUGGUGAUGG@LB@ ||||:||||| |||| :| |||:||:||||:|@LB@ AGUCUUUACU UACU UC AAUUACUACUAUC@LB@3'-UUU...CUGUA GCCAUUAUUUAUU G-5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -11.22 kcal/mol@LB@Hybridization Energy -27.55 kcal/mol@LB@Unfolding Energy - mRNA 10.0434 kcal/mol@LB@Unfolding Energy - sRNA 6.29139 kcal/mol@LB@@LB@Position - mRNA 189 -- 234@LB@Position - sRNA 2 -- 43@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 200 |
0.03384 |
0.5555 |
b0316 |
yahB |
-11.86 |
0.039401 |
41 -- 57 |
47 -- 61 |
putative DNA-bindng transcriptional regulator |
b0504 |
_____________40________________58\n_____________|_________________|\n5'-CUG...ACUGC__________UUU____AUAUG...CUU-3'\n______________GUGGGGGUAA___CAGA\n______________:|:|||||||___||||\n______________UAUCCCCAUU___GUCU\n3'-UUU...AACUU__________U______GUAAG...UCG-5'\n_____________|_________________|\n_____________62________________46\n |
44 -- 50 |
52 -- 58 |
-17.391 kcal/mol |
3.44789 kcal/mol |
2.08204 kcal/mol |
40 58@LB@ | |@LB@5'-CUG...ACUGC UUU AUAUG...CUU-3'@LB@ GUGGGGGUAA CAGA@LB@ :|:||||||| ||||@LB@ UAUCCCCAUU GUCU@LB@3'-UUU...AACUU U GUAAG...UCG-5'@LB@ | |@LB@ 62 46@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -17.391 kcal/mol@LB@Unfolding Energy - mRNA 3.44789 kcal/mol@LB@Unfolding Energy - sRNA 2.08204 kcal/mol@LB@@LB@Position - mRNA 41 -- 57@LB@Position - sRNA 47 -- 61@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 45 |
0.005107 |
0.3601 |
b0435 |
bolA |
-10.01 |
0.096403 |
160 -- 209 |
3 -- 59 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________159________________________________________________________210\n_____________|__________________________________________________________|\n5'-UGA...UUUAA____A___________C____CGU______U___AGG______UUUC___________CGUGA...CCG-3'\n______________AGGG_UGGAU_GACAU_UCAG_______UG_CGG____AGAUA______AUGAUGAUA\n______________||||_|::|:_|||||_||||_______||_|||____|:|||______|||||||||\n______________UCCC_AUUUG_CUGUA_AGUC_______AC_GCC____UUUAU______UACUACUAU\n3'-UUU...CUUUA____C_____U__________UUUACUU__U___AUUA_____UUCAAU_________CG-5'\n_____________|__________________________________________________________|\n_____________60_________________________________________________________2\n |
203 -- 209 |
3 -- 9 |
-31.3101 kcal/mol |
14.9582 kcal/mol |
6.33762 kcal/mol |
159 210@LB@ | |@LB@5'-UGA...UUUAA A C CGU U AGG UUUC CGUGA...CCG-3'@LB@ AGGG UGGAU GACAU UCAG UG CGG AGAUA AUGAUGAUA@LB@ |||| |::|: ||||| |||| || ||| |:||| |||||||||@LB@ UCCC AUUUG CUGUA AGUC AC GCC UUUAU UACUACUAU@LB@3'-UUU...CUUUA C U UUUACUU U AUUA UUCAAU CG-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -31.3101 kcal/mol@LB@Unfolding Energy - mRNA 14.9582 kcal/mol@LB@Unfolding Energy - sRNA 6.33762 kcal/mol@LB@@LB@Position - mRNA 160 -- 209@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 191 |
0.03238 |
0.5507 |
b0445 |
ybaE |
-8.08 |
0.221556 |
124 -- 136 |
4 -- 16 |
putative ABC transporter periplasmic binding protein |
|
_____________123___________137\n_____________|_____________|\n5'-CGU...GACAC_____________UGAGU...GUU-3'\n______________GGUUAAUGGUGAU\n______________:|||||||:||||\n______________UCAAUUACUACUA\n3'-UUU...UUAUU_____________UCG-5'\n_____________|_____________|\n_____________17____________3\n |
130 -- 136 |
4 -- 10 |
-14.6304 kcal/mol |
6.50117 kcal/mol |
0.0488422 kcal/mol |
123 137@LB@ | |@LB@5'-CGU...GACAC UGAGU...GUU-3'@LB@ GGUUAAUGGUGAU@LB@ :|||||||:||||@LB@ UCAAUUACUACUA@LB@3'-UUU...UUAUU UCG-5'@LB@ | |@LB@ 17 3@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -14.6304 kcal/mol@LB@Unfolding Energy - mRNA 6.50117 kcal/mol@LB@Unfolding Energy - sRNA 0.0488422 kcal/mol@LB@@LB@Position - mRNA 124 -- 136@LB@Position - sRNA 4 -- 16@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 86 |
0.013 |
0.4962 |
b0451 |
amtB |
-9.48 |
0.122870 |
5 -- 23 |
1 -- 22 |
ammonium transporter |
|
_____________4______________________24\n_____________|______________________|\n_______5'-CCAA_______AAU____________GAUUG...CGU-3'\n______________AAGUAAA_____UGAUG_UGGC\n______________||:||||_____|||||_|:||\n______________UUUAUUU_____ACUAC_AUCG\n3'-UUU...CAUUA_______CAAUU_____U____-5'\n_____________|_____________________|\n_____________23____________________1\n |
5 -- 11 |
16 -- 22 |
-11.4865 kcal/mol |
1.90989 kcal/mol |
0.0989066 kcal/mol |
4 24@LB@ | |@LB@ 5'-CCAA AAU GAUUG...CGU-3'@LB@ AAGUAAA UGAUG UGGC@LB@ ||:|||| ||||| |:||@LB@ UUUAUUU ACUAC AUCG@LB@3'-UUU...CAUUA CAAUU U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -11.4865 kcal/mol@LB@Unfolding Energy - mRNA 1.90989 kcal/mol@LB@Unfolding Energy - sRNA 0.0989066 kcal/mol@LB@@LB@Position - mRNA 5 -- 23@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 105 |
0.01645 |
0.5059 |
b0454 |
ybaZ |
-8.45 |
0.190978 |
84 -- 93 |
47 -- 56 |
excision repair protein alkyltransferase-like protein ATL |
|
_____________83_________94\n_____________|__________|\n5'-AGG...GACCU__________GUAGC...UUC-3'\n______________GGUAAACAGA\n______________||||||||||\n______________CCAUUUGUCU\n3'-UUU...UAUCC__________GUAAG...UCG-5'\n_____________|__________|\n_____________57_________46\n |
87 -- 93 |
47 -- 53 |
-13.2019 kcal/mol |
2.68818 kcal/mol |
2.06629 kcal/mol |
83 94@LB@ | |@LB@5'-AGG...GACCU GUAGC...UUC-3'@LB@ GGUAAACAGA@LB@ ||||||||||@LB@ CCAUUUGUCU@LB@3'-UUU...UAUCC GUAAG...UCG-5'@LB@ | |@LB@ 57 46@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -13.2019 kcal/mol@LB@Unfolding Energy - mRNA 2.68818 kcal/mol@LB@Unfolding Energy - sRNA 2.06629 kcal/mol@LB@@LB@Position - mRNA 84 -- 93@LB@Position - sRNA 47 -- 56@LB@Position Seed - mRNA 87 -- 93@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 146 |
0.02455 |
0.526 |
b0491 |
fetB |
-8.60 |
0.179526 |
114 -- 156 |
14 -- 57 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________113_______________________________________________157\n_____________|_________________________________________________|\n5'-GCC...GCUGU______C___C____AAGAC_____U___CAU_________________GAUUA...AGA-3'\n______________GGGUGA_ACA_GAUA_____GAAAU_AAU___GCGG______AUAAAGU\n______________||||:|_|||_||:|_____|||||_|||___:|||______|||||||\n______________CCCAUU_UGU_CUGU_____CUUUA_UUA___UGCC______UAUUUCA\n3'-UUU...UUAUC_______________AAGU______C___C______AUUAUU_______AUUAC...UCG-5'\n_____________|_________________________________________________|\n_____________58________________________________________________13\n |
150 -- 156 |
14 -- 20 |
-22.3302 kcal/mol |
7.40722 kcal/mol |
6.32606 kcal/mol |
113 157@LB@ | |@LB@5'-GCC...GCUGU C C AAGAC U CAU GAUUA...AGA-3'@LB@ GGGUGA ACA GAUA GAAAU AAU GCGG AUAAAGU@LB@ ||||:| ||| ||:| ||||| ||| :||| |||||||@LB@ CCCAUU UGU CUGU CUUUA UUA UGCC UAUUUCA@LB@3'-UUU...UUAUC AAGU C C AUUAUU AUUAC...UCG-5'@LB@ | |@LB@ 58 13@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -22.3302 kcal/mol@LB@Unfolding Energy - mRNA 7.40722 kcal/mol@LB@Unfolding Energy - sRNA 6.32606 kcal/mol@LB@@LB@Position - mRNA 114 -- 156@LB@Position - sRNA 14 -- 57@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 176 |
0.02871 |
0.5353 |
b0518 |
fdrA |
-11.39 |
0.049925 |
288 -- 297 |
6 -- 15 |
putative NAD(P)-binding acyl-CoA synthetase |
b0320 |
_____________287________298\n_____________|__________|\n5'-CGC...AAAAU__________UUU-3'\n______________GUUGAUGAUG\n______________|||:||||||\n______________CAAUUACUAC\n3'-UUU...UAUUU__________UAUCG-5'\n_____________|__________|\n_____________16_________5\n |
291 -- 297 |
6 -- 12 |
-11.8608 kcal/mol |
0.426728 kcal/mol |
0.0442104 kcal/mol |
287 298@LB@ | |@LB@5'-CGC...AAAAU UUU-3'@LB@ GUUGAUGAUG@LB@ |||:||||||@LB@ CAAUUACUAC@LB@3'-UUU...UAUUU UAUCG-5'@LB@ | |@LB@ 16 5@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -11.8608 kcal/mol@LB@Unfolding Energy - mRNA 0.426728 kcal/mol@LB@Unfolding Energy - sRNA 0.0442104 kcal/mol@LB@@LB@Position - mRNA 288 -- 297@LB@Position - sRNA 6 -- 15@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 6 -- 12@LB@ |
