| 76 |
0.01084 |
0.4523 |
b3990 |
thiH |
-9.70 |
0.111440 |
16 -- 25 |
55 -- 64 |
tyrosine lyase involved in thiamine-thiazole moiety synthesis |
|
_____________15_________26\n_____________|__________|\n5'-GCC...CGCUG__________CCGAC...AUG-3'\n______________GAAAUGGGGG\n______________|||||:||||\n______________CUUUAUCCCC\n3'-UUU...GCCAA__________AUUUG...UCG-5'\n_____________|__________|\n_____________65_________54\n |
19 -- 25 |
55 -- 61 |
-15.2995 kcal/mol |
5.57445 kcal/mol |
0.0291912 kcal/mol |
15 26@LB@ | |@LB@5'-GCC...CGCUG CCGAC...AUG-3'@LB@ GAAAUGGGGG@LB@ |||||:||||@LB@ CUUUAUCCCC@LB@3'-UUU...GCCAA AUUUG...UCG-5'@LB@ | |@LB@ 65 54@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -15.2995 kcal/mol@LB@Unfolding Energy - mRNA 5.57445 kcal/mol@LB@Unfolding Energy - sRNA 0.0291912 kcal/mol@LB@@LB@Position - mRNA 16 -- 25@LB@Position - sRNA 55 -- 64@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 164 |
0.02654 |
0.526 |
b3993 |
thiE |
-11.45 |
0.048376 |
123 -- 151 |
37 -- 65 |
thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) |
|
_____________122____________________________152\n_____________|______________________________|\n5'-CAC...ACUAU_________AAU__________G_______ACUUC...UAC-3'\n______________UGAAAUGGG____GGCGGAUAU_UCGGAGA\n______________||||||:||____::|:||:||_||:||:|\n______________ACUUUAUCC____UUGUCUGUA_AGUCUUU\n3'-UUU...GGCCA_________CCAU_________________ACUUA...UCG-5'\n_____________|______________________________|\n_____________66_____________________________36\n |
125 -- 131 |
57 -- 63 |
-26.5084 kcal/mol |
7.89908 kcal/mol |
7.1561 kcal/mol |
122 152@LB@ | |@LB@5'-CAC...ACUAU AAU G ACUUC...UAC-3'@LB@ UGAAAUGGG GGCGGAUAU UCGGAGA@LB@ ||||||:|| ::|:||:|| ||:||:|@LB@ ACUUUAUCC UUGUCUGUA AGUCUUU@LB@3'-UUU...GGCCA CCAU ACUUA...UCG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -26.5084 kcal/mol@LB@Unfolding Energy - mRNA 7.89908 kcal/mol@LB@Unfolding Energy - sRNA 7.1561 kcal/mol@LB@@LB@Position - mRNA 123 -- 151@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 120 |
0.01923 |
0.5155 |
b4004 |
zraR |
-8.11 |
0.219313 |
234 -- 248 |
1 -- 12 |
fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein |
b2220 |
_____________233_____________249\n_____________|_______________|\n5'-GGA...UGGUG________CAU____CACUG...CGC-3'\n______________GAUGAUGA___UAGC\n______________:|||||||___||||\n______________UUACUACU___AUCG\n3'-UUU...UUCAA_______________-5'\n_____________|______________|\n_____________13_____________1\n |
235 -- 241 |
5 -- 11 |
-11.3572 kcal/mol |
3.21186 kcal/mol |
0.0394463 kcal/mol |
233 249@LB@ | |@LB@5'-GGA...UGGUG CAU CACUG...CGC-3'@LB@ GAUGAUGA UAGC@LB@ :||||||| ||||@LB@ UUACUACU AUCG@LB@3'-UUU...UUCAA -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -8.11 kcal/mol@LB@Hybridization Energy -11.3572 kcal/mol@LB@Unfolding Energy - mRNA 3.21186 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 234 -- 248@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 111 |
0.01748 |
0.5155 |
b4012 |
yjaB |
-9.42 |
0.126217 |
155 -- 212 |
1 -- 59 |
GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein |
|
_____________154_____________________________________________________________213\n_____________|_______________________________________________________________|\n5'-AAG...UUUCA___AAA____U___________UAUAA____________A________AA______UAU____AUUCG...CAG-3'\n______________AGG___AGAC__ACG_UUAGAA_____GAAUGAC__UAA_AGG_AGAG__AAUGGU___UAGU\n______________|||___|:||__||:_|:||||_____|||||||__|||_|::_|:||__||||:|___|||:\n______________UCC___UUUG__UGU_AGUCUU_____CUUACUG__AUU_UUU_UUUC__UUACUA___AUCG\n3'-UUU...CUUUA___CCA____UC___A______UA__________CC___A___A____AA______CU_____-5'\n_____________|______________________________________________________________|\n_____________60_____________________________________________________________1\n |
180 -- 186 |
29 -- 35 |
-23.4815 kcal/mol |
7.7268 kcal/mol |
6.33764 kcal/mol |
154 213@LB@ | |@LB@5'-AAG...UUUCA AAA U UAUAA A AA UAU AUUCG...CAG-3'@LB@ AGG AGAC ACG UUAGAA GAAUGAC UAA AGG AGAG AAUGGU UAGU@LB@ ||| |:|| ||: |:|||| ||||||| ||| |:: |:|| ||||:| |||:@LB@ UCC UUUG UGU AGUCUU CUUACUG AUU UUU UUUC UUACUA AUCG@LB@3'-UUU...CUUUA CCA UC A UA CC A A AA CU -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -23.4815 kcal/mol@LB@Unfolding Energy - mRNA 7.7268 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 155 -- 212@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 66 |
0.009484 |
0.4523 |
b4034 |
malE |
-12.98 |
0.021943 |
73 -- 123 |
2 -- 55 |
maltose transporter subunit |
|
_____________72_____________________________________________________124\n_____________|______________________________________________________|\n5'-AGG...AUUCU_________G_____CACAAAGC_________GGC______GC__G__G_____AAAGA...UGG-3'\n______________GU_AACAGA_A_UCA_________GACGGUGG___GUAGGG__AA_GA_GAUGG\n______________||_||||||_|_|||_________||||||::___:||::|__||_||_|||:|\n______________CA_UUGUCU_U_AGU_________CUGCCAUU___UAUUUC__UU_CU_CUAUC\n3'-UUU...AUCCC__U______G_A___CUUUACUUA________AUU______AA__A__A_____G-5'\n_____________|______________________________________________________|\n_____________56_____________________________________________________1\n |
95 -- 101 |
24 -- 30 |
-30.2337 kcal/mol |
10.9143 kcal/mol |
6.33752 kcal/mol |
72 124@LB@ | |@LB@5'-AGG...AUUCU G CACAAAGC GGC GC G G AAAGA...UGG-3'@LB@ GU AACAGA A UCA GACGGUGG GUAGGG AA GA GAUGG@LB@ || |||||| | ||| ||||||:: :||::| || || |||:|@LB@ CA UUGUCU U AGU CUGCCAUU UAUUUC UU CU CUAUC@LB@3'-UUU...AUCCC U G A CUUUACUUA AUU AA A A G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -30.2337 kcal/mol@LB@Unfolding Energy - mRNA 10.9143 kcal/mol@LB@Unfolding Energy - sRNA 6.33752 kcal/mol@LB@@LB@Position - mRNA 73 -- 123@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 21 |
0.001002 |
0.1516 |
b4045 |
yjbJ |
-13.25 |
0.018991 |
259 -- 290 |
28 -- 62 |
stress-induced protein UPF0337 family |
|
_____________258__________________________________291\n_____________|____________________________________|\n5'-CGU...AGAGC_______C_____U___CGAU________U______AUCAU...AAG-3'\n______________AAUGGGG__AAAC_GAC_______GAUGA_AUGACG\n______________|||:|||__||||_|||_______:||||_||||||\n______________UUAUCCC__UUUG_CUG_______UUACU_UACUGC\n3'-UUU...CAACU_______CA____U___UAAGUCU____________CAUUA...UCG-5'\n_____________|____________________________________|\n_____________63___________________________________27\n |
259 -- 265 |
56 -- 62 |
-23.7721 kcal/mol |
4.22826 kcal/mol |
6.29418 kcal/mol |
258 291@LB@ | |@LB@5'-CGU...AGAGC C U CGAU U AUCAU...AAG-3'@LB@ AAUGGGG AAAC GAC GAUGA AUGACG@LB@ |||:||| |||| ||| :|||| ||||||@LB@ UUAUCCC UUUG CUG UUACU UACUGC@LB@3'-UUU...CAACU CA U UAAGUCU CAUUA...UCG-5'@LB@ | |@LB@ 63 27@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -23.7721 kcal/mol@LB@Unfolding Energy - mRNA 4.22826 kcal/mol@LB@Unfolding Energy - sRNA 6.29418 kcal/mol@LB@@LB@Position - mRNA 259 -- 290@LB@Position - sRNA 28 -- 62@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 42 |
0.004307 |
0.3367 |
b4051 |
qorA |
-12.29 |
0.031673 |
118 -- 140 |
3 -- 26 |
quinone oxidoreductase NADPH-dependent |
|
_____________117______________________141\n_____________|________________________|\n5'-CGC...UGCCA_______________CC_______AAGAA...UCG-3'\n______________UAGUGAAUGGAGUUA__GA_GAUA\n______________||:|:|||::|||||__||_||||\n______________AUUAUUUAUUUCAAU__CU_CUAU\n3'-UUU...CUGCC_______________UA__A____CG-5'\n_____________|________________________|\n_____________27_______________________2\n |
126 -- 132 |
12 -- 18 |
-16.4059 kcal/mol |
3.53962 kcal/mol |
0.580109 kcal/mol |
117 141@LB@ | |@LB@5'-CGC...UGCCA CC AAGAA...UCG-3'@LB@ UAGUGAAUGGAGUUA GA GAUA@LB@ ||:|:|||::||||| || ||||@LB@ AUUAUUUAUUUCAAU CU CUAU@LB@3'-UUU...CUGCC UA A CG-5'@LB@ | |@LB@ 27 2@LB@@LB@@LB@Energy -12.29 kcal/mol@LB@Hybridization Energy -16.4059 kcal/mol@LB@Unfolding Energy - mRNA 3.53962 kcal/mol@LB@Unfolding Energy - sRNA 0.580109 kcal/mol@LB@@LB@Position - mRNA 118 -- 140@LB@Position - sRNA 3 -- 26@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 197 |
0.03325 |
0.554 |
b4139 |
aspA |
-12.92 |
0.022631 |
26 -- 66 |
25 -- 59 |
aspartate ammonia-lyase |
|
_____________25_________________________________________67\n_____________|__________________________________________|\n5'-GAU...AAUUA________AA__C____C__________UCCAG__U______GAAAU...ACU-3'\n______________AGGGGUAA__AC_GACA_UUA_AAGUGA_____AU_ACGGUA\n______________||||||||__||_||||_|:|_||:|||_____||_||||||\n______________UCCCCAUU__UG_CUGU_AGU_UUUACU_____UA_UGCCAU\n3'-UUU...CUUUA____________U____A___C_____________C______UAUUU...UCG-5'\n_____________|__________________________________________|\n_____________60_________________________________________24\n |
27 -- 33 |
52 -- 58 |
-28.0294 kcal/mol |
8.80617 kcal/mol |
6.29893 kcal/mol |
25 67@LB@ | |@LB@5'-GAU...AAUUA AA C C UCCAG U GAAAU...ACU-3'@LB@ AGGGGUAA AC GACA UUA AAGUGA AU ACGGUA@LB@ |||||||| || |||| |:| ||:||| || ||||||@LB@ UCCCCAUU UG CUGU AGU UUUACU UA UGCCAU@LB@3'-UUU...CUUUA U A C C UAUUU...UCG-5'@LB@ | |@LB@ 60 24@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -28.0294 kcal/mol@LB@Unfolding Energy - mRNA 8.80617 kcal/mol@LB@Unfolding Energy - sRNA 6.29893 kcal/mol@LB@@LB@Position - mRNA 26 -- 66@LB@Position - sRNA 25 -- 59@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 155 |
0.02521 |
0.526 |
b4208 |
cycA |
-8.71 |
0.171102 |
175 -- 207 |
24 -- 51 |
D-alanine/D-serine/glycine transporter |
|
_____________174________________________________208\n_____________|__________________________________|\n5'-AUU...ACAAC_______GGUA__________AAAAAC_______AUCAG...UUG-3'\n______________ACAGACA____CAGGAA_GAA______AUGGUAG\n______________|||||||____|||:||_|||______|:||||:\n______________UGUCUGU____GUCUUU_CUU______UGCCAUU\n3'-UUU...CCAUU_______AA________A___AC___________AUUUA...UCG-5'\n_____________|__________________________________|\n_____________52_________________________________23\n |
201 -- 207 |
24 -- 30 |
-19.5671 kcal/mol |
4.55835 kcal/mol |
6.29692 kcal/mol |
174 208@LB@ | |@LB@5'-AUU...ACAAC GGUA AAAAAC AUCAG...UUG-3'@LB@ ACAGACA CAGGAA GAA AUGGUAG@LB@ ||||||| |||:|| ||| |:||||:@LB@ UGUCUGU GUCUUU CUU UGCCAUU@LB@3'-UUU...CCAUU AA A AC AUUUA...UCG-5'@LB@ | |@LB@ 52 23@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -19.5671 kcal/mol@LB@Unfolding Energy - mRNA 4.55835 kcal/mol@LB@Unfolding Energy - sRNA 6.29692 kcal/mol@LB@@LB@Position - mRNA 175 -- 207@LB@Position - sRNA 24 -- 51@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 180 |
0.02979 |
0.5424 |
b4217 |
ytfK |
-6.46 |
0.400721 |
35 -- 83 |
12 -- 56 |
DUF1107 family protein |
|
_____________34_____________________________________________________84\n_____________|______________________________________________________|\n5'-GAA...GCUUC______A____A______________A__U___ACCUUUAG_____A_______UACGC...AAU-3'\n______________GGUAAA_AGAU_AUUC_____UGAAU_AU_GUA________GUAAA_AAAGUUA\n______________||||||_|||:_||||_____|||||_|:_|||________:||||_|||||||\n______________CCAUUU_UCUG_UAAG_____ACUUA_UG_CAU________UAUUU_UUUCAAU\n3'-UUU...UAUCC______G_________UCUUU_____C__C________________A_______UACUA...UCG-5'\n_____________|______________________________________________________|\n_____________57_____________________________________________________11\n |
77 -- 83 |
12 -- 18 |
-20.0112 kcal/mol |
7.22293 kcal/mol |
6.33232 kcal/mol |
34 84@LB@ | |@LB@5'-GAA...GCUUC A A A U ACCUUUAG A UACGC...AAU-3'@LB@ GGUAAA AGAU AUUC UGAAU AU GUA GUAAA AAAGUUA@LB@ |||||| |||: |||| ||||| |: ||| :|||| |||||||@LB@ CCAUUU UCUG UAAG ACUUA UG CAU UAUUU UUUCAAU@LB@3'-UUU...UAUCC G UCUUU C C A UACUA...UCG-5'@LB@ | |@LB@ 57 11@LB@@LB@@LB@Energy -6.46 kcal/mol@LB@Hybridization Energy -20.0112 kcal/mol@LB@Unfolding Energy - mRNA 7.22293 kcal/mol@LB@Unfolding Energy - sRNA 6.33232 kcal/mol@LB@@LB@Position - mRNA 35 -- 83@LB@Position - sRNA 12 -- 56@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 12 -- 18@LB@ |
