| 182 |
0.03007 |
0.5424 |
b3131 |
agaR |
-10.52 |
0.076061 |
148 -- 177 |
28 -- 59 |
transcriptional repressor of the aga regulon |
|
_____________147______________________________178\n_____________|________________________________|\n5'-CAG...UAGAA___C__U________AAAC_____________AAAGU...AGG-3'\n______________AGG_GU_AAUAGGCA____GAAAUGAA__ACG\n______________|||_||_||:||:||____||||||||__|||\n______________UCC_CA_UUGUCUGU____CUUUACUU__UGC\n3'-UUU...CUUUA___C__U________AAGU________AC___CAUUA...UCG-5'\n_____________|________________________________|\n_____________60_______________________________27\n |
167 -- 173 |
34 -- 40 |
-23.0737 kcal/mol |
6.26419 kcal/mol |
6.28754 kcal/mol |
147 178@LB@ | |@LB@5'-CAG...UAGAA C U AAAC AAAGU...AGG-3'@LB@ AGG GU AAUAGGCA GAAAUGAA ACG@LB@ ||| || ||:||:|| |||||||| |||@LB@ UCC CA UUGUCUGU CUUUACUU UGC@LB@3'-UUU...CUUUA C U AAGU AC CAUUA...UCG-5'@LB@ | |@LB@ 60 27@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -23.0737 kcal/mol@LB@Unfolding Energy - mRNA 6.26419 kcal/mol@LB@Unfolding Energy - sRNA 6.28754 kcal/mol@LB@@LB@Position - mRNA 148 -- 177@LB@Position - sRNA 28 -- 59@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 163 |
0.02649 |
0.526 |
b3156 |
yhbS |
-11.68 |
0.043230 |
178 -- 217 |
16 -- 53 |
GNAT family putative N-acetyltransferase |
|
_____________177_______________________________________218\n_____________|_________________________________________|\n5'-CCG...AAACC______________U_______CC___C____UC_______AAUUC...AUC-3'\n______________AAACAGACA_UCGG_AGGUGAA__AUG_UAAU__GAGUAGA\n______________|||||||||_||:|_|::||||__|:|_||||__:|:||:|\n______________UUUGUCUGU_AGUC_UUUACUU__UGC_AUUA__UUUAUUU\n3'-UUU...CCCCA_________A____________AC___C_____________CAAUU...UCG-5'\n_____________|_________________________________________|\n_____________54________________________________________15\n |
211 -- 217 |
16 -- 22 |
-26.1463 kcal/mol |
8.14596 kcal/mol |
6.32252 kcal/mol |
177 218@LB@ | |@LB@5'-CCG...AAACC U CC C UC AAUUC...AUC-3'@LB@ AAACAGACA UCGG AGGUGAA AUG UAAU GAGUAGA@LB@ ||||||||| ||:| |::|||| |:| |||| :|:||:|@LB@ UUUGUCUGU AGUC UUUACUU UGC AUUA UUUAUUU@LB@3'-UUU...CCCCA A AC C CAAUU...UCG-5'@LB@ | |@LB@ 54 15@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -26.1463 kcal/mol@LB@Unfolding Energy - mRNA 8.14596 kcal/mol@LB@Unfolding Energy - sRNA 6.32252 kcal/mol@LB@@LB@Position - mRNA 178 -- 217@LB@Position - sRNA 16 -- 53@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 6 |
0.0001423 |
0.07172 |
b3183 |
obgE |
-17.58 |
0.001399 |
174 -- 220 |
1 -- 51 |
GTPase involved in cell partioning and DNA repair |
|
_____________173____________________________________________________221\n_____________|______________________________________________________|\n5'-UUU...CCCGC__________________UUU____AG___A__________UGU__________AUCGA...GCC-3'\n______________GCAGGC______GAAUGA___ACGG__AAU_AAAUGAAGUU___UGAUGA_AGC\n______________:|||:|______:|||||___||||__|||_||||:|||||___||||||_|||\n______________UGUCUG______UUUACU___UGCC__UUA_UUUAUUUCAA___ACUACU_UCG\n3'-UUU...CCAUU______UAAGUC______UAC____A_______________UU_______A___-5'\n_____________|_____________________________________________________|\n_____________52____________________________________________________1\n |
202 -- 208 |
13 -- 19 |
-33.7182 kcal/mol |
9.79823 kcal/mol |
6.33528 kcal/mol |
173 221@LB@ | |@LB@5'-UUU...CCCGC UUU AG A UGU AUCGA...GCC-3'@LB@ GCAGGC GAAUGA ACGG AAU AAAUGAAGUU UGAUGA AGC@LB@ :|||:| :||||| |||| ||| ||||:||||| |||||| |||@LB@ UGUCUG UUUACU UGCC UUA UUUAUUUCAA ACUACU UCG@LB@3'-UUU...CCAUU UAAGUC UAC A UU A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -17.58 kcal/mol@LB@Hybridization Energy -33.7182 kcal/mol@LB@Unfolding Energy - mRNA 9.79823 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 174 -- 220@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 170 |
0.02787 |
0.531 |
b3184 |
yhbE |
-10.77 |
0.067448 |
1 -- 31 |
11 -- 53 |
EamA family inner membrane putative transporter |
|
______________1__________________________________________32\n______________|__________________________________________|\n___________5'-_________GUA_________AUU___________________AGGCC...UGG-3'\n______________AAGCAGACG_____AAGUGAA___CG__________AAGUUAA\n______________||:|||||:_____||:||||___||__________|||||||\n______________UUUGUCUGU_____UUUACUU___GC__________UUCAAUU\n3'-UUU...CCCCA_________AAGUC_______ACU__CAUUAUUUAU_______ACUAC...UCG-5'\n_____________|___________________________________________|\n_____________54__________________________________________10\n |
25 -- 31 |
11 -- 17 |
-18.1985 kcal/mol |
1.09209 kcal/mol |
6.3325 kcal/mol |
1 32@LB@ | |@LB@ 5'- GUA AUU AGGCC...UGG-3'@LB@ AAGCAGACG AAGUGAA CG AAGUUAA@LB@ ||:|||||: ||:|||| || |||||||@LB@ UUUGUCUGU UUUACUU GC UUCAAUU@LB@3'-UUU...CCCCA AAGUC ACU CAUUAUUUAU ACUAC...UCG-5'@LB@ | |@LB@ 54 10@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -18.1985 kcal/mol@LB@Unfolding Energy - mRNA 1.09209 kcal/mol@LB@Unfolding Energy - sRNA 6.3325 kcal/mol@LB@@LB@Position - mRNA 1 -- 31@LB@Position - sRNA 11 -- 53@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 55 |
0.006796 |
0.4056 |
b3192 |
mlaC |
-12.17 |
0.033659 |
167 -- 226 |
1 -- 57 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-GGA...CCUGU_____C______AAUAAU____________CC____C_____UU____C_U___________C__UUUGC...AGG-3'\n______________GGGUA_AAC_GA______UUCAGGA__GAA__GACG___AUG__UAAA_G_UUAAUGAUGGU_GC\n______________|||||_|||_||______|||||:|__|||__||||___||:__||||_|_|||||||||:|_||\n______________CCCAU_UUG_CU______AAGUCUU__CUU__CUGC___UAU__AUUU_C_AAUUACUACUA_CG\n3'-UUU...UUAUC_________U__GU___________UA___A_____CAU___UU__________________U__-5'\n_____________|________________________________________________________________|\n_____________58_______________________________________________________________1\n |
217 -- 223 |
4 -- 10 |
-32.157 kcal/mol |
13.6506 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-GGA...CCUGU C AAUAAU CC C UU C U C UUUGC...AGG-3'@LB@ GGGUA AAC GA UUCAGGA GAA GACG AUG UAAA G UUAAUGAUGGU GC@LB@ ||||| ||| || |||||:| ||| |||| ||: |||| | |||||||||:| ||@LB@ CCCAU UUG CU AAGUCUU CUU CUGC UAU AUUU C AAUUACUACUA CG@LB@3'-UUU...UUAUC U GU UA A CAU UU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -32.157 kcal/mol@LB@Unfolding Energy - mRNA 13.6506 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 195 |
0.03271 |
0.5507 |
b3213 |
gltD |
-10.79 |
0.067022 |
188 -- 211 |
38 -- 59 |
glutamate synthase 4Fe-4S protein small subunit |
|
_____________187______________________212\n_____________|________________________|\n5'-AGC...CAGUA_______GC____AUGAG______UGUUU...AGC-3'\n______________AGGGGUA__AACA_____UCAGAA\n______________|||||||__||||_____||||||\n______________UCCCCAU__UUGU_____AGUCUU\n3'-UUU...CUUUA_____________CUGUA______UACUU...UCG-5'\n_____________|________________________|\n_____________60_______________________37\n |
188 -- 194 |
53 -- 59 |
-20.1632 kcal/mol |
3.12506 kcal/mol |
6.25108 kcal/mol |
187 212@LB@ | |@LB@5'-AGC...CAGUA GC AUGAG UGUUU...AGC-3'@LB@ AGGGGUA AACA UCAGAA@LB@ ||||||| |||| ||||||@LB@ UCCCCAU UUGU AGUCUU@LB@3'-UUU...CUUUA CUGUA UACUU...UCG-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -20.1632 kcal/mol@LB@Unfolding Energy - mRNA 3.12506 kcal/mol@LB@Unfolding Energy - sRNA 6.25108 kcal/mol@LB@@LB@Position - mRNA 188 -- 211@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 44 |
0.004782 |
0.3568 |
b3243 |
aaeR |
-11.65 |
0.043804 |
4 -- 44 |
1 -- 57 |
transcriptional regulator for aaeXAB operon |
|
_____________3_________________________________________________________45\n_____________|_________________________________________________________|\n________5'-AAC_________________UGU____CCU_____U_____G__________________AGGCG...UCA-3'\n______________GGG_AAACAGAC__UCA____UGA____UGGU_GUAAA_AGAG___________AGC\n______________|||_||||||||__|||____|||____:|||_:||||_|:||___________|||\n______________CCC_UUUGUCUG__AGU____ACU____GCCA_UAUUU_UUUC___________UCG\n3'-UUU...UUAUC___A________UA___CUUU___UACU____U_____A____AAUUACUACUA___-5'\n_____________|________________________________________________________|\n_____________58_______________________________________________________1\n |
8 -- 14 |
46 -- 52 |
-26.9604 kcal/mol |
8.9713 kcal/mol |
6.33758 kcal/mol |
3 45@LB@ | |@LB@ 5'-AAC UGU CCU U G AGGCG...UCA-3'@LB@ GGG AAACAGAC UCA UGA UGGU GUAAA AGAG AGC@LB@ ||| |||||||| ||| ||| :||| :|||| |:|| |||@LB@ CCC UUUGUCUG AGU ACU GCCA UAUUU UUUC UCG@LB@3'-UUU...UUAUC A UA CUUU UACU U A AAUUACUACUA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -26.9604 kcal/mol@LB@Unfolding Energy - mRNA 8.9713 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 4 -- 44@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 188 |
0.03165 |
0.5492 |
b3247 |
rng |
-10.28 |
0.085420 |
187 -- 220 |
10 -- 64 |
ribonuclease G |
|
_____________186_____________________________________________________221\n_____________|_______________________________________________________|\n5'-GUU...CGUGA_________A____________________________C_______U________AAACG...CGC-3'\n______________GAAA_AGGG_UAAAC________________AUGACGG___UGAAU___GUUAGU\n______________||||_||||_|||||________________|||||||___|:|||___||||:|\n______________CUUU_UCCC_AUUUG________________UACUGCC___AUUUA___CAAUUA\n3'-UUU...GCCAA____A____C_____UCUGUAAGUCUUUACU_______AUU_____UUU______CUACU...UCG-5'\n_____________|_______________________________________________________|\n_____________65______________________________________________________9\n |
201 -- 207 |
27 -- 33 |
-22.7807 kcal/mol |
6.16544 kcal/mol |
6.33995 kcal/mol |
186 221@LB@ | |@LB@5'-GUU...CGUGA A C U AAACG...CGC-3'@LB@ GAAA AGGG UAAAC AUGACGG UGAAU GUUAGU@LB@ |||| |||| ||||| ||||||| |:||| ||||:|@LB@ CUUU UCCC AUUUG UACUGCC AUUUA CAAUUA@LB@3'-UUU...GCCAA A C UCUGUAAGUCUUUACU AUU UUU CUACU...UCG-5'@LB@ | |@LB@ 65 9@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -22.7807 kcal/mol@LB@Unfolding Energy - mRNA 6.16544 kcal/mol@LB@Unfolding Energy - sRNA 6.33995 kcal/mol@LB@@LB@Position - mRNA 187 -- 220@LB@Position - sRNA 10 -- 64@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 96 |
0.01578 |
0.5059 |
b3283 |
yrdD |
-12.59 |
0.027007 |
10 -- 20 |
2 -- 12 |
ssDNA-binding protein function unknown |
|
_____________9___________21\n_____________|___________|\n5'-AAC...CGUGA___________AGCGA...UUG-3'\n______________AAUGGUGAUAG\n______________||||:||||||\n______________UUACUACUAUC\n3'-UUU...UUCAA___________G-5'\n_____________|___________|\n_____________13__________1\n |
14 -- 20 |
2 -- 8 |
-13.6612 kcal/mol |
1.03146 kcal/mol |
0.0386655 kcal/mol |
9 21@LB@ | |@LB@5'-AAC...CGUGA AGCGA...UUG-3'@LB@ AAUGGUGAUAG@LB@ ||||:||||||@LB@ UUACUACUAUC@LB@3'-UUU...UUCAA G-5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -13.6612 kcal/mol@LB@Unfolding Energy - mRNA 1.03146 kcal/mol@LB@Unfolding Energy - sRNA 0.0386655 kcal/mol@LB@@LB@Position - mRNA 10 -- 20@LB@Position - sRNA 2 -- 12@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 143 |
0.02405 |
0.526 |
b3292 |
zntR |
-11.17 |
0.055543 |
275 -- 285 |
1 -- 12 |
zntA gene transcriptional activator |
|
_____________274__________286\n_____________|____________|\n5'-UGA...CAGCA____________AUGAA...CUG-3'\n______________GAUGAUGG_AGC\n______________:||||||:_|||\n______________UUACUACU_UCG\n3'-UUU...UUCAA________A___-5'\n_____________|___________|\n_____________13__________1\n |
276 -- 282 |
5 -- 11 |
-12.3439 kcal/mol |
1.13072 kcal/mol |
0.0394463 kcal/mol |
274 286@LB@ | |@LB@5'-UGA...CAGCA AUGAA...CUG-3'@LB@ GAUGAUGG AGC@LB@ :||||||: |||@LB@ UUACUACU UCG@LB@3'-UUU...UUCAA A -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -12.3439 kcal/mol@LB@Unfolding Energy - mRNA 1.13072 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 275 -- 285@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 5 -- 11@LB@ |
