192 |
0.01895 |
0.3104 |
b3333 |
gspL |
-4.89 |
0.645256 |
110 -- 132 |
1 -- 21 |
general secretory pathway component cryptic |
|
_____________109______________________133\n_____________|________________________|\n5'-GAU...CCAGG____________CAUAUU______AACCG...CGC-3'\n______________GAUGGCAAA_GC______UUUUUC\n______________|||::||||_||______|:||||\n______________CUAUUGUUU_CG______AGAAAG\n3'-UUU...UACUA_________A__CGC_________-5'\n_____________|_______________________|\n_____________22______________________1\n |
110 -- 116 |
15 -- 21 |
-12.6455 kcal/mol |
6.50221 kcal/mol |
1.25763 kcal/mol |
109 133@LB@ | |@LB@5'-GAU...CCAGG CAUAUU AACCG...CGC-3'@LB@ GAUGGCAAA GC UUUUUC@LB@ |||::|||| || |:||||@LB@ CUAUUGUUU CG AGAAAG@LB@3'-UUU...UACUA A CGC -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -4.89 kcal/mol@LB@Hybridization Energy -12.6455 kcal/mol@LB@Unfolding Energy - mRNA 6.50221 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 110 -- 132@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 15 -- 21@LB@ |
6 |
9.655e-05 |
0.04801 |
b4175 |
hflC |
-9.47 |
0.148653 |
186 -- 211 |
5 -- 32 |
HflB protease modulator specific for phage lambda cII repressor |
|
_____________185____________________________212\n_____________|______________________________|\n5'-UUA...CAGCG_________________________AA___AGUUA...GUU-3'\n______________UCAGGGG_GA__AUAAC_GAUGCGU__GUC\n______________||||||:_||__|||||_:|||||:__|||\n______________AGUCCCU_CU__UAUUG_UUACGCG__CAG\n3'-UUU...ACUUA_______A__AC_____U____________AAAG-5'\n_____________|______________________________|\n_____________33_____________________________4\n |
200 -- 206 |
8 -- 14 |
-26.2754 kcal/mol |
8.97237 kcal/mol |
7.8362 kcal/mol |
185 212@LB@ | |@LB@5'-UUA...CAGCG AA AGUUA...GUU-3'@LB@ UCAGGGG GA AUAAC GAUGCGU GUC@LB@ ||||||: || ||||| :|||||: |||@LB@ AGUCCCU CU UAUUG UUACGCG CAG@LB@3'-UUU...ACUUA A AC U AAAG-5'@LB@ | |@LB@ 33 4@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -26.2754 kcal/mol@LB@Unfolding Energy - mRNA 8.97237 kcal/mol@LB@Unfolding Energy - sRNA 7.8362 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 5 -- 32@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
183 |
0.01807 |
0.3104 |
b1508 |
hipB |
-7.23 |
0.331427 |
238 -- 247 |
10 -- 19 |
antitoxin of HipAB toxin-antitoxin system |
b1299 b1434 |
_____________237________248\n_____________|__________|\n5'-AUG...GCAAU__________AAUGA...AAA-3'\n______________UGGCGAAUGC\n______________|::|:|||||\n______________AUUGUUUACG\n3'-UUU...CUACU__________CGCAG...AAG-5'\n_____________|__________|\n_____________20_________9\n |
241 -- 247 |
10 -- 16 |
-11.7956 kcal/mol |
3.36082 kcal/mol |
1.20833 kcal/mol |
237 248@LB@ | |@LB@5'-AUG...GCAAU AAUGA...AAA-3'@LB@ UGGCGAAUGC@LB@ |::|:|||||@LB@ AUUGUUUACG@LB@3'-UUU...CUACU CGCAG...AAG-5'@LB@ | |@LB@ 20 9@LB@@LB@@LB@Energy -7.23 kcal/mol@LB@Hybridization Energy -11.7956 kcal/mol@LB@Unfolding Energy - mRNA 3.36082 kcal/mol@LB@Unfolding Energy - sRNA 1.20833 kcal/mol@LB@@LB@Position - mRNA 238 -- 247@LB@Position - sRNA 10 -- 19@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 10 -- 16@LB@ |
160 |
0.015 |
0.3104 |
b2022 |
hisB |
-11.12 |
0.077869 |
165 -- 171 |
5 -- 11 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________164_____172\n_____________|_______|\n5'-CAG...AGCCA_______AUUGA...AAC-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
165 -- 171 |
5 -- 11 |
-14.7431 kcal/mol |
2.50821 kcal/mol |
1.11145 kcal/mol |
164 172@LB@ | |@LB@5'-CAG...AGCCA AUUGA...AAC-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -14.7431 kcal/mol@LB@Unfolding Energy - mRNA 2.50821 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 165 -- 171@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 5 -- 11@LB@ |
28 |
0.001743 |
0.2094 |
b2308 |
hisQ |
-15.00 |
0.015715 |
1 -- 16 |
7 -- 21 |
histidine ABC transporter permease |
|
______________1_______________17\n______________|_______________|\n___________5'-_________C______AAGCA...UUG-3'\n______________GAUAACGAA_UGCGCG\n______________||||||:||_||||||\n______________CUAUUGUUU_ACGCGC\n3'-UUU...UACUA________________AGAAAG-5'\n_____________|________________|\n_____________22_______________6\n |
3 -- 9 |
13 -- 19 |
-21.0778 kcal/mol |
4.83206 kcal/mol |
1.24179 kcal/mol |
1 17@LB@ | |@LB@ 5'- C AAGCA...UUG-3'@LB@ GAUAACGAA UGCGCG@LB@ ||||||:|| ||||||@LB@ CUAUUGUUU ACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -21.0778 kcal/mol@LB@Unfolding Energy - mRNA 4.83206 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 1 -- 16@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 13 -- 19@LB@ |
114 |
0.01161 |
0.3104 |
b3392 |
hofP |
-8.60 |
0.204995 |
138 -- 147 |
1 -- 11 |
DNA catabolic protein |
|
_____________137_________148\n_____________|___________|\n5'-ACU...CGUGA___________GUUAA...GCG-3'\n______________GC_CGUUUUUC\n______________||_|||:||||\n______________CG_GCAGAAAG\n3'-UUU...GUUUA__C________-5'\n_____________|__________|\n_____________12_________1\n |
141 -- 147 |
1 -- 7 |
-12.6405 kcal/mol |
2.86562 kcal/mol |
1.17076 kcal/mol |
137 148@LB@ | |@LB@5'-ACU...CGUGA GUUAA...GCG-3'@LB@ GC CGUUUUUC@LB@ || |||:||||@LB@ CG GCAGAAAG@LB@3'-UUU...GUUUA C -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.6405 kcal/mol@LB@Unfolding Energy - mRNA 2.86562 kcal/mol@LB@Unfolding Energy - sRNA 1.17076 kcal/mol@LB@@LB@Position - mRNA 138 -- 147@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 1 -- 7@LB@ |
75 |
0.006972 |
0.3087 |
b4348 |
hsdS |
-13.63 |
0.027959 |
190 -- 211 |
7 -- 29 |
specificity determinant for hsdM and hsdR |
|
_____________189_____________________212\n_____________|_______________________|\n5'-CUG...UUGGU_______A_____________G_GAAAU...UAA-3'\n______________GGGGUGA_GG_AAUGAGUGCG_G\n______________|||:|||_|:_||::|:||||_|\n______________CCCUACU_CU_UUGUUUACGC_C\n3'-UUU...UAAGU_______A__A__________G_AGAAAG-5'\n_____________|_______________________|\n_____________30______________________6\n |
203 -- 209 |
9 -- 15 |
-24.9713 kcal/mol |
3.9222 kcal/mol |
7.41901 kcal/mol |
189 212@LB@ | |@LB@5'-CUG...UUGGU A G GAAAU...UAA-3'@LB@ GGGGUGA GG AAUGAGUGCG G@LB@ |||:||| |: ||::|:|||| |@LB@ CCCUACU CU UUGUUUACGC C@LB@3'-UUU...UAAGU A A G AGAAAG-5'@LB@ | |@LB@ 30 6@LB@@LB@@LB@Energy -13.63 kcal/mol@LB@Hybridization Energy -24.9713 kcal/mol@LB@Unfolding Energy - mRNA 3.9222 kcal/mol@LB@Unfolding Energy - sRNA 7.41901 kcal/mol@LB@@LB@Position - mRNA 190 -- 211@LB@Position - sRNA 7 -- 29@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 9 -- 15@LB@ |
27 |
0.001549 |
0.1943 |
b0440 |
hupB |
-11.81 |
0.059023 |
134 -- 149 |
5 -- 20 |
HU DNA-binding transcriptional regulator beta subunit |
|
_____________133______________150\n_____________|________________|\n5'-CGC...CUGAU_____UGC________CGUAC...CUG-3'\n______________AUAAC___UGCGCGUU\n______________|||||___|||||||:\n______________UAUUG___ACGCGCAG\n3'-UUU...ACUAC_____UUU________AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
143 -- 149 |
5 -- 11 |
-15.9939 kcal/mol |
2.93365 kcal/mol |
1.24804 kcal/mol |
133 150@LB@ | |@LB@5'-CGC...CUGAU UGC CGUAC...CUG-3'@LB@ AUAAC UGCGCGUU@LB@ ||||| |||||||:@LB@ UAUUG ACGCGCAG@LB@3'-UUU...ACUAC UUU AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -15.9939 kcal/mol@LB@Unfolding Energy - mRNA 2.93365 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 134 -- 149@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 5 -- 11@LB@ |
158 |
0.01496 |
0.3104 |
b4278 |
insG |
-10.00 |
0.121023 |
32 -- 48 |
3 -- 20 |
IS4 transposase |
|
_____________31_________________49\n_____________|__________________|\n5'-GUU...UCCAC________A_________GUUAC...CUC-3'\n______________AUAACAAA__CGCGUUUU\n______________||||||||__|||||:||\n______________UAUUGUUU__GCGCAGAA\n3'-UUU...ACUAC________AC________AG-5'\n_____________|__________________|\n_____________21_________________2\n |
42 -- 48 |
3 -- 9 |
-15.3953 kcal/mol |
4.13684 kcal/mol |
1.25547 kcal/mol |
31 49@LB@ | |@LB@5'-GUU...UCCAC A GUUAC...CUC-3'@LB@ AUAACAAA CGCGUUUU@LB@ |||||||| |||||:||@LB@ UAUUGUUU GCGCAGAA@LB@3'-UUU...ACUAC AC AG-5'@LB@ | |@LB@ 21 2@LB@@LB@@LB@Energy -10.00 kcal/mol@LB@Hybridization Energy -15.3953 kcal/mol@LB@Unfolding Energy - mRNA 4.13684 kcal/mol@LB@Unfolding Energy - sRNA 1.25547 kcal/mol@LB@@LB@Position - mRNA 32 -- 48@LB@Position - sRNA 3 -- 20@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 3 -- 9@LB@ |
112 |
0.01125 |
0.3104 |
b2515 |
ispG |
-10.24 |
0.110168 |
132 -- 140 |
4 -- 12 |
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|
_____________131_______141\n_____________|_________|\n5'-CGU...CAGGU_________GACCC...UGA-3'\n______________UGCGCGUCU\n______________|||||||||\n______________ACGCGCAGA\n3'-UUU...UGUUU_________AAG-5'\n_____________|_________|\n_____________13________3\n |
134 -- 140 |
4 -- 10 |
-16.4542 kcal/mol |
5.04928 kcal/mol |
1.16019 kcal/mol |
131 141@LB@ | |@LB@5'-CGU...CAGGU GACCC...UGA-3'@LB@ UGCGCGUCU@LB@ |||||||||@LB@ ACGCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -16.4542 kcal/mol@LB@Unfolding Energy - mRNA 5.04928 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 132 -- 140@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 4 -- 10@LB@ |