157 |
0.01467 |
0.3104 |
b0906 |
ycaP |
-12.44 |
0.045773 |
54 -- 69 |
5 -- 18 |
UPF0702 family putative inner membrane protein |
|
_____________53_______________70\n_____________|________________|\n5'-AGU...CCGGG_________UU_____AUGAA...UCU-3'\n______________GAUAAAUGU__GCGUC\n______________:|:|||||:__|||||\n______________UUGUUUACG__CGCAG\n3'-UUU...UACUA________________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
56 -- 62 |
10 -- 16 |
-16.0437 kcal/mol |
2.38303 kcal/mol |
1.2243 kcal/mol |
53 70@LB@ | |@LB@5'-AGU...CCGGG UU AUGAA...UCU-3'@LB@ GAUAAAUGU GCGUC@LB@ :|:|||||: |||||@LB@ UUGUUUACG CGCAG@LB@3'-UUU...UACUA AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -16.0437 kcal/mol@LB@Unfolding Energy - mRNA 2.38303 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 10 -- 16@LB@ |
120 |
0.01222 |
0.3104 |
b0916 |
ycaQ |
-9.32 |
0.156865 |
225 -- 243 |
1 -- 17 |
DUF1006 family protein with C-terminal wHTH domain |
|
_____________224_________________244\n_____________|___________________|\n5'-UGG...CCCUU__U_________AAUC___ACCUU...AUA-3'\n______________GC_GAUGCGCGU____UUC\n______________:|_:||||||||____|||\n______________UG_UUACGCGCA____AAG\n3'-UUU...ACUAU__U_________GA_____-5'\n_____________|__________________|\n_____________18_________________1\n |
230 -- 236 |
6 -- 12 |
-16.5738 kcal/mol |
6.00902 kcal/mol |
1.23994 kcal/mol |
224 244@LB@ | |@LB@5'-UGG...CCCUU U AAUC ACCUU...AUA-3'@LB@ GC GAUGCGCGU UUC@LB@ :| :|||||||| |||@LB@ UG UUACGCGCA AAG@LB@3'-UUU...ACUAU U GA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -16.5738 kcal/mol@LB@Unfolding Energy - mRNA 6.00902 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 225 -- 243@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 6 -- 12@LB@ |
68 |
0.006348 |
0.3087 |
b1202 |
ycgV |
-6.40 |
0.429936 |
233 -- 244 |
4 -- 18 |
putative adhesin |
b2647 |
_____________232_____________245\n_____________|_______________|\n5'-ACU...ACCAA_______________CGCUG...UUG-3'\n______________AGCAGAU___CGUCU\n______________|:||:||___|||||\n______________UUGUUUA___GCAGA\n3'-UUU...UACUA_______CGC_____AAG-5'\n_____________|_______________|\n_____________19______________3\n |
233 -- 239 |
12 -- 18 |
-9.8712 kcal/mol |
2.23703 kcal/mol |
1.22995 kcal/mol |
232 245@LB@ | |@LB@5'-ACU...ACCAA CGCUG...UUG-3'@LB@ AGCAGAU CGUCU@LB@ |:||:|| |||||@LB@ UUGUUUA GCAGA@LB@3'-UUU...UACUA CGC AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -6.40 kcal/mol@LB@Hybridization Energy -9.8712 kcal/mol@LB@Unfolding Energy - mRNA 2.23703 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 233 -- 244@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 12 -- 18@LB@ |
62 |
0.005646 |
0.3084 |
b1242 |
ychE |
-13.92 |
0.024785 |
141 -- 151 |
1 -- 11 |
UPF0056 family inner membrane protein |
|
_____________140_________152\n_____________|___________|\n5'-CAU...UGUCA___________CAACC...GCA-3'\n______________GCGCGUCUUUU\n______________||||||||||:\n______________CGCGCAGAAAG\n3'-UUU...GUUUA___________-5'\n_____________|__________|\n_____________12_________1\n |
145 -- 151 |
1 -- 7 |
-17.9236 kcal/mol |
2.83374 kcal/mol |
1.17076 kcal/mol |
140 152@LB@ | |@LB@5'-CAU...UGUCA CAACC...GCA-3'@LB@ GCGCGUCUUUU@LB@ ||||||||||:@LB@ CGCGCAGAAAG@LB@3'-UUU...GUUUA -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -17.9236 kcal/mol@LB@Unfolding Energy - mRNA 2.83374 kcal/mol@LB@Unfolding Energy - sRNA 1.17076 kcal/mol@LB@@LB@Position - mRNA 141 -- 151@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 1 -- 7@LB@ |
98 |
0.009835 |
0.3104 |
b1213 |
ychQ |
-13.77 |
0.026325 |
164 -- 179 |
6 -- 23 |
SIRB family inner membrane protein |
|
_____________163________________180\n_____________|__________________|\n5'-GAC...CUAUG__________________AACGC...AUC-3'\n______________GUGAUAACGA__GCGCGU\n______________:|||||||:|__||||||\n______________UACUAUUGUU__CGCGCA\n3'-UUU...CCUAC__________UA______GAAAG-5'\n_____________|__________________|\n_____________24_________________5\n |
167 -- 173 |
14 -- 20 |
-20.3809 kcal/mol |
4.08318 kcal/mol |
2.52311 kcal/mol |
163 180@LB@ | |@LB@5'-GAC...CUAUG AACGC...AUC-3'@LB@ GUGAUAACGA GCGCGU@LB@ :|||||||:| ||||||@LB@ UACUAUUGUU CGCGCA@LB@3'-UUU...CCUAC UA GAAAG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.77 kcal/mol@LB@Hybridization Energy -20.3809 kcal/mol@LB@Unfolding Energy - mRNA 4.08318 kcal/mol@LB@Unfolding Energy - sRNA 2.52311 kcal/mol@LB@@LB@Position - mRNA 164 -- 179@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 14 -- 20@LB@ |
139 |
0.01337 |
0.3104 |
b1255 |
yciC |
-11.25 |
0.074167 |
287 -- 299 |
1 -- 13 |
UPF0259 family inner membrane protein |
|
_____________286___________300\n_____________|_____________|\n5'-AAU...UUGCU__________A__A-3'\n______________AUGUGCGUUU_UC\n______________|||:||||:|_||\n______________UACGCGCAGA_AG\n3'-UUU...UUGUU__________A__-5'\n_____________|____________|\n_____________14___________1\n |
290 -- 296 |
4 -- 10 |
-15.0519 kcal/mol |
2.63141 kcal/mol |
1.17519 kcal/mol |
286 300@LB@ | |@LB@5'-AAU...UUGCU A A-3'@LB@ AUGUGCGUUU UC@LB@ |||:||||:| ||@LB@ UACGCGCAGA AG@LB@3'-UUU...UUGUU A -5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -15.0519 kcal/mol@LB@Unfolding Energy - mRNA 2.63141 kcal/mol@LB@Unfolding Energy - sRNA 1.17519 kcal/mol@LB@@LB@Position - mRNA 287 -- 299@LB@Position - sRNA 1 -- 13@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 4 -- 10@LB@ |
113 |
0.01159 |
0.3104 |
b1279 |
yciS |
-9.20 |
0.164515 |
90 -- 101 |
6 -- 18 |
DUF1049 family inner membrane protein function unknown |
|
_____________89____________102\n_____________|_____________|\n5'-ACC...UCAUC_____________GGAUG...UGU-3'\n______________AAC_AAUGCGUGU\n______________|||_||||||:||\n______________UUG_UUACGCGCA\n3'-UUU...UACUA___U_________GAAAG-5'\n_____________|_____________|\n_____________19____________5\n |
95 -- 101 |
6 -- 12 |
-13.4585 kcal/mol |
3.04139 kcal/mol |
1.21878 kcal/mol |
89 102@LB@ | |@LB@5'-ACC...UCAUC GGAUG...UGU-3'@LB@ AAC AAUGCGUGU@LB@ ||| ||||||:||@LB@ UUG UUACGCGCA@LB@3'-UUU...UACUA U GAAAG-5'@LB@ | |@LB@ 19 5@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -13.4585 kcal/mol@LB@Unfolding Energy - mRNA 3.04139 kcal/mol@LB@Unfolding Energy - sRNA 1.21878 kcal/mol@LB@@LB@Position - mRNA 90 -- 101@LB@Position - sRNA 6 -- 18@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 6 -- 12@LB@ |
178 |
0.01756 |
0.3104 |
b2017 |
yefM |
-12.99 |
0.036476 |
219 -- 231 |
5 -- 18 |
antitoxin of the YoeB-YefM toxin-antitoxin system |
|
_____________218____________232\n_____________|______________|\n5'-AUU...GCUAC______________AGAAU...AUG-3'\n______________AGCGAA_GCGCGUC\n______________|:|:||_|||||||\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
225 -- 231 |
5 -- 11 |
-18.6086 kcal/mol |
4.39571 kcal/mol |
1.2243 kcal/mol |
218 232@LB@ | |@LB@5'-AUU...GCUAC AGAAU...AUG-3'@LB@ AGCGAA GCGCGUC@LB@ |:|:|| |||||||@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -18.6086 kcal/mol@LB@Unfolding Energy - mRNA 4.39571 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 219 -- 231@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 5 -- 11@LB@ |
18 |
0.00061 |
0.1147 |
b2126 |
yehU |
-11.17 |
0.076396 |
235 -- 252 |
1 -- 18 |
inner membrane putative sensory kinase in two-component system with YehT |
|
_____________234________________253\n_____________|__________________|\n5'-GUC...GCUUC__________________UAGUC...UAA-3'\n______________AGCAGAUGUGCGUUUUUU\n______________|:||:|||:||||:|||:\n______________UUGUUUACGCGCAGAAAG\n3'-UUU...UACUA__________________-5'\n_____________|_________________|\n_____________19________________1\n |
246 -- 252 |
1 -- 7 |
-22.3117 kcal/mol |
9.89973 kcal/mol |
1.24077 kcal/mol |
234 253@LB@ | |@LB@5'-GUC...GCUUC UAGUC...UAA-3'@LB@ AGCAGAUGUGCGUUUUUU@LB@ |:||:|||:||||:|||:@LB@ UUGUUUACGCGCAGAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -22.3117 kcal/mol@LB@Unfolding Energy - mRNA 9.89973 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 235 -- 252@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 1 -- 7@LB@ |
11 |
0.0003246 |
0.08948 |
b2299 |
yfcD |
-11.11 |
0.078371 |
283 -- 295 |
5 -- 18 |
putative NUDIX hydrolase |
|
_____________282____________296\n_____________|______________|\n5'-AGA...CCGGG__________G___ACAGU-3'\n______________AACAAAUGCG_G_C\n______________||||||||||_|_|\n______________UUGUUUACGC_C_G\n3'-UUU...UACUA__________G_A_AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
286 -- 292 |
9 -- 15 |
-15.7313 kcal/mol |
3.39963 kcal/mol |
1.2243 kcal/mol |
282 296@LB@ | |@LB@5'-AGA...CCGGG G ACAGU-3'@LB@ AACAAAUGCG G C@LB@ |||||||||| | |@LB@ UUGUUUACGC C G@LB@3'-UUU...UACUA G A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.7313 kcal/mol@LB@Unfolding Energy - mRNA 3.39963 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 283 -- 295@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 9 -- 15@LB@ |