92 |
0.009361 |
0.3104 |
b3652 |
recG |
-7.88 |
0.265686 |
265 -- 278 |
7 -- 20 |
ATP-dependent DNA helicase |
|
_____________264_____________279\n_____________|_______________|\n5'-CAA...ACUUA________C______AAAAU...UGC-3'\n______________GUAACAAA_UG_GCG\n______________:|||||||_||_|||\n______________UAUUGUUU_AC_CGC\n3'-UUU...ACUAC___________G___AGAAAG-5'\n_____________|_______________|\n_____________21______________6\n |
266 -- 272 |
13 -- 19 |
-11.4583 kcal/mol |
2.34189 kcal/mol |
1.23906 kcal/mol |
264 279@LB@ | |@LB@5'-CAA...ACUUA C AAAAU...UGC-3'@LB@ GUAACAAA UG GCG@LB@ :||||||| || |||@LB@ UAUUGUUU AC CGC@LB@3'-UUU...ACUAC G AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -11.4583 kcal/mol@LB@Unfolding Energy - mRNA 2.34189 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 265 -- 278@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 13 -- 19@LB@ |
108 |
0.01118 |
0.3104 |
b2565 |
recO |
-9.71 |
0.135448 |
294 -- 300 |
5 -- 11 |
gap repair protein |
|
_____________293____300\n_____________|______|\n5'-GAA...GGCGC_______-3'\n______________GUGCGUC\n______________|:|||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
294 -- 300 |
5 -- 11 |
-11.8762 kcal/mol |
1.05403 kcal/mol |
1.11145 kcal/mol |
293 300@LB@ | |@LB@5'-GAA...GGCGC -3'@LB@ GUGCGUC@LB@ |:|||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -11.8762 kcal/mol@LB@Unfolding Energy - mRNA 1.05403 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 294 -- 300@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 5 -- 11@LB@ |
93 |
0.009444 |
0.3104 |
b3822 |
recQ |
-7.42 |
0.310549 |
176 -- 212 |
9 -- 45 |
ATP-dependent DNA helicase |
|
_____________175____________________________________213\n_____________|______________________________________|\n5'-CGC...CUGUU________A__CAA__________AU______CAG___GAAGU...UUA-3'\n______________UUUAUUUC_GG___UC_GGGGUGA__GUGGCG___GCG\n______________||:||:||_|:___||_|||:|||__:|::|:___|||\n______________AAGUAGAG_CU___AG_CCCUACU__UAUUGU___CGC\n3'-UUU...UUUUA________A__UA___U_______AC______UUA___GCAGAAAG-5'\n_____________|______________________________________|\n_____________46_____________________________________8\n |
192 -- 198 |
23 -- 29 |
-25.6556 kcal/mol |
8.78202 kcal/mol |
9.45193 kcal/mol |
175 213@LB@ | |@LB@5'-CGC...CUGUU A CAA AU CAG GAAGU...UUA-3'@LB@ UUUAUUUC GG UC GGGGUGA GUGGCG GCG@LB@ ||:||:|| |: || |||:||| :|::|: |||@LB@ AAGUAGAG CU AG CCCUACU UAUUGU CGC@LB@3'-UUU...UUUUA A UA U AC UUA GCAGAAAG-5'@LB@ | |@LB@ 46 8@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -25.6556 kcal/mol@LB@Unfolding Energy - mRNA 8.78202 kcal/mol@LB@Unfolding Energy - sRNA 9.45193 kcal/mol@LB@@LB@Position - mRNA 176 -- 212@LB@Position - sRNA 9 -- 45@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 23 -- 29@LB@ |
194 |
0.0191 |
0.3104 |
b2698 |
recX |
-10.17 |
0.113250 |
93 -- 107 |
8 -- 22 |
regulatory protein for RecA |
|
_____________92______________108\n_____________|_______________|\n5'-AAA...GUAGA__________G____AGCAG...GAC-3'\n______________UGAUAGCGAA_GCGU\n______________|||||:|:||_|||:\n______________ACUAUUGUUU_CGCG\n3'-UUU...CUACU__________A____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
96 -- 102 |
13 -- 19 |
-16.2974 kcal/mol |
4.88496 kcal/mol |
1.23838 kcal/mol |
92 108@LB@ | |@LB@5'-AAA...GUAGA G AGCAG...GAC-3'@LB@ UGAUAGCGAA GCGU@LB@ |||||:|:|| |||:@LB@ ACUAUUGUUU CGCG@LB@3'-UUU...CUACU A CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -16.2974 kcal/mol@LB@Unfolding Energy - mRNA 4.88496 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 93 -- 107@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 13 -- 19@LB@ |
149 |
0.01422 |
0.3104 |
b0415 |
ribE |
-7.20 |
0.333957 |
258 -- 265 |
4 -- 11 |
riboflavin synthase beta chain |
|
_____________257______266\n_____________|________|\n5'-CGG...CCAUC________CAACA...GUG-3'\n______________GCGCGUUU\n______________||||||:|\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
259 -- 265 |
4 -- 10 |
-13.1965 kcal/mol |
4.83677 kcal/mol |
1.15639 kcal/mol |
257 266@LB@ | |@LB@5'-CGG...CCAUC CAACA...GUG-3'@LB@ GCGCGUUU@LB@ ||||||:|@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -13.1965 kcal/mol@LB@Unfolding Energy - mRNA 4.83677 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 258 -- 265@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 4 -- 10@LB@ |
133 |
0.01287 |
0.3104 |
b3179 |
rlmE |
-8.60 |
0.205247 |
24 -- 43 |
1 -- 17 |
23S rRNA U2552 2'-O-ribose methyltransferase SAM-dependent |
|
_____________23___________________44\n_____________|____________________|\n5'-GCC...CUUGA__________CAGAC_____AGGUG...CCC-3'\n______________GCGGAUGUGC_____CUUUC\n______________:|::|||:||_____|||||\n______________UGUUUACGCG_____GAAAG\n3'-UUU...ACUAU__________CA________-5'\n_____________|___________________|\n_____________18__________________1\n |
27 -- 33 |
8 -- 14 |
-16.3409 kcal/mol |
6.50016 kcal/mol |
1.23994 kcal/mol |
23 44@LB@ | |@LB@5'-GCC...CUUGA CAGAC AGGUG...CCC-3'@LB@ GCGGAUGUGC CUUUC@LB@ :|::|||:|| |||||@LB@ UGUUUACGCG GAAAG@LB@3'-UUU...ACUAU CA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -16.3409 kcal/mol@LB@Unfolding Energy - mRNA 6.50016 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 8 -- 14@LB@ |
10 |
0.0002413 |
0.08171 |
b2594 |
rluD |
-15.70 |
0.011720 |
48 -- 64 |
5 -- 21 |
23S rRNA pseudouridine(1911 1915 1917) synthase |
|
_____________47________________65\n_____________|_________________|\n5'-CCC...CACCA____UUUC_________AUGAC...GUU-3'\n______________GAUA____AUGCGCGUC\n______________||||____|||||||||\n______________CUAU____UACGCGCAG\n3'-UUU...UACUA____UGUU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
58 -- 64 |
5 -- 11 |
-19.7285 kcal/mol |
2.7828 kcal/mol |
1.24955 kcal/mol |
47 65@LB@ | |@LB@5'-CCC...CACCA UUUC AUGAC...GUU-3'@LB@ GAUA AUGCGCGUC@LB@ |||| |||||||||@LB@ CUAU UACGCGCAG@LB@3'-UUU...UACUA UGUU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -15.70 kcal/mol@LB@Hybridization Energy -19.7285 kcal/mol@LB@Unfolding Energy - mRNA 2.7828 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 48 -- 64@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 5 -- 11@LB@ |
144 |
0.01383 |
0.3104 |
b1135 |
rluE |
-11.03 |
0.080673 |
174 -- 189 |
5 -- 20 |
23S rRNA pseudouridine(2457) synthase |
|
_____________173______________190\n_____________|________________|\n5'-UGU...CCGUC____A___________AUUAG...AAC-3'\n______________AUGA_AGAUGCGCGUU\n______________||:|_|:||||||||:\n______________UAUU_UUUACGCGCAG\n3'-UUU...ACUAC____G___________AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
183 -- 189 |
5 -- 11 |
-17.9797 kcal/mol |
5.69694 kcal/mol |
1.24804 kcal/mol |
173 190@LB@ | |@LB@5'-UGU...CCGUC A AUUAG...AAC-3'@LB@ AUGA AGAUGCGCGUU@LB@ ||:| |:||||||||:@LB@ UAUU UUUACGCGCAG@LB@3'-UUU...ACUAC G AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -17.9797 kcal/mol@LB@Unfolding Energy - mRNA 5.69694 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 174 -- 189@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 5 -- 11@LB@ |
70 |
0.006501 |
0.3087 |
b3301 |
rplO |
-9.96 |
0.122936 |
194 -- 206 |
8 -- 20 |
50S ribosomal subunit protein L15 |
|
_____________193___________207\n_____________|_____________|\n5'-UUC...GAGGA____G________UUAAA...GUG-3'\n______________GUAA_AGAUGCGU\n______________:|||_|:|||||:\n______________UAUU_UUUACGCG\n3'-UUU...ACUAC____G________CAGAAAG-5'\n_____________|_____________|\n_____________21____________7\n |
200 -- 206 |
8 -- 14 |
-13.6668 kcal/mol |
2.47062 kcal/mol |
1.23367 kcal/mol |
193 207@LB@ | |@LB@5'-UUC...GAGGA G UUAAA...GUG-3'@LB@ GUAA AGAUGCGU@LB@ :||| |:|||||:@LB@ UAUU UUUACGCG@LB@3'-UUU...ACUAC G CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -13.6668 kcal/mol@LB@Unfolding Energy - mRNA 2.47062 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 194 -- 206@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
197 |
0.01929 |
0.3104 |
b2185 |
rplY |
-8.58 |
0.206984 |
8 -- 20 |
7 -- 19 |
50S ribosomal subunit protein L25 |
|
_____________7_____________21\n_____________|_____________|\n____5'-CCAGUAC_____________AAAAA...GCA-3'\n______________UGGCAGGUGCGUG\n______________|::||::||||:|\n______________AUUGUUUACGCGC\n3'-UUU...CUACU_____________AGAAAG-5'\n_____________|_____________|\n_____________20____________6\n |
14 -- 20 |
7 -- 13 |
-17.3397 kcal/mol |
7.54262 kcal/mol |
1.21943 kcal/mol |
7 21@LB@ | |@LB@ 5'-CCAGUAC AAAAA...GCA-3'@LB@ UGGCAGGUGCGUG@LB@ |::||::||||:|@LB@ AUUGUUUACGCGC@LB@3'-UUU...CUACU AGAAAG-5'@LB@ | |@LB@ 20 6@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.3397 kcal/mol@LB@Unfolding Energy - mRNA 7.54262 kcal/mol@LB@Unfolding Energy - sRNA 1.21943 kcal/mol@LB@@LB@Position - mRNA 8 -- 20@LB@Position - sRNA 7 -- 19@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 7 -- 13@LB@ |