185 |
0.01831 |
0.3104 |
b3164 |
pnp |
-7.42 |
0.310961 |
131 -- 137 |
8 -- 14 |
polynucleotide phosphorylase/polyadenylase |
|
_____________130_____138\n_____________|_______|\n5'-AGC...GCGAG_______AGAAG...UUA-3'\n______________GAUGCGC\n______________:||||||\n______________UUACGCG\n3'-UUU...AUUGU_______CAGAAAG-5'\n_____________|_______|\n_____________15______7\n |
131 -- 137 |
8 -- 14 |
-10.1419 kcal/mol |
2.24272 kcal/mol |
0.481462 kcal/mol |
130 138@LB@ | |@LB@5'-AGC...GCGAG AGAAG...UUA-3'@LB@ GAUGCGC@LB@ :||||||@LB@ UUACGCG@LB@3'-UUU...AUUGU CAGAAAG-5'@LB@ | |@LB@ 15 7@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -10.1419 kcal/mol@LB@Unfolding Energy - mRNA 2.24272 kcal/mol@LB@Unfolding Energy - sRNA 0.481462 kcal/mol@LB@@LB@Position - mRNA 131 -- 137@LB@Position - sRNA 8 -- 14@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 8 -- 14@LB@ |
162 |
0.01506 |
0.3104 |
b0871 |
poxB |
-6.02 |
0.481603 |
228 -- 255 |
23 -- 53 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________227_______________________________256\n_____________|_________________________________|\n5'-CCG...AUAUC_____________________CGG_________AACGC...GUG-3'\n______________GCCAAAA___CA_CUC_GAAU___CAGGGGUGA\n______________|||||||___||_|||_||||___|||||:|||\n______________CGGUUUU___GU_GAG_CUUA___GUCCCUACU\n3'-UUU...CUCAC_______AAA__A___A____A___________ACUAU...AAG-5'\n_____________|_________________________________|\n_____________54________________________________22\n |
249 -- 255 |
23 -- 29 |
-28.0165 kcal/mol |
6.84512 kcal/mol |
15.1535 kcal/mol |
227 256@LB@ | |@LB@5'-CCG...AUAUC CGG AACGC...GUG-3'@LB@ GCCAAAA CA CUC GAAU CAGGGGUGA@LB@ ||||||| || ||| |||| |||||:|||@LB@ CGGUUUU GU GAG CUUA GUCCCUACU@LB@3'-UUU...CUCAC AAA A A A ACUAU...AAG-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -28.0165 kcal/mol@LB@Unfolding Energy - mRNA 6.84512 kcal/mol@LB@Unfolding Energy - sRNA 15.1535 kcal/mol@LB@@LB@Position - mRNA 228 -- 255@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 23 -- 29@LB@ |
147 |
0.01411 |
0.3104 |
b0441 |
ppiD |
-10.51 |
0.099467 |
81 -- 98 |
3 -- 21 |
periplasmic folding chaperone has an inactive PPIase domain |
|
_____________80__________________99\n_____________|___________________|\n5'-GUA...UAUUC______UUUC_________GUGGG...ACC-3'\n______________GGUGAC_____UGCGUCUU\n______________|:|:||_____:|||||||\n______________CUAUUG_____GCGCAGAA\n3'-UUU...UACUA______UUUAC________AG-5'\n_____________|___________________|\n_____________22__________________2\n |
92 -- 98 |
3 -- 9 |
-17.0331 kcal/mol |
5.27038 kcal/mol |
1.257 kcal/mol |
80 99@LB@ | |@LB@5'-GUA...UAUUC UUUC GUGGG...ACC-3'@LB@ GGUGAC UGCGUCUU@LB@ |:|:|| :|||||||@LB@ CUAUUG GCGCAGAA@LB@3'-UUU...UACUA UUUAC AG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -17.0331 kcal/mol@LB@Unfolding Energy - mRNA 5.27038 kcal/mol@LB@Unfolding Energy - sRNA 1.257 kcal/mol@LB@@LB@Position - mRNA 81 -- 98@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 3 -- 9@LB@ |
9 |
0.000195 |
0.07335 |
b1830 |
prc |
-15.09 |
0.015143 |
131 -- 161 |
7 -- 38 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
_____________130______________________________162\n_____________|________________________________|\n5'-CGA...UCCAG___________U___UCUU____U________CAGAA...CGG-3'\n______________CUGAAUUCGGG_AUG____UGAU__GUGCGCG\n______________||||||||:||_|||____|:|:__:||||||\n______________GACUUAAGUCC_UAC____AUUG__UACGCGC\n3'-UUU...GUAGA___________C___UACU____UU_______AGAAAG-5'\n_____________|________________________________|\n_____________39_______________________________6\n |
155 -- 161 |
7 -- 13 |
-31.7028 kcal/mol |
7.25259 kcal/mol |
9.35859 kcal/mol |
130 162@LB@ | |@LB@5'-CGA...UCCAG U UCUU U CAGAA...CGG-3'@LB@ CUGAAUUCGGG AUG UGAU GUGCGCG@LB@ ||||||||:|| ||| |:|: :||||||@LB@ GACUUAAGUCC UAC AUUG UACGCGC@LB@3'-UUU...GUAGA C UACU UU AGAAAG-5'@LB@ | |@LB@ 39 6@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -31.7028 kcal/mol@LB@Unfolding Energy - mRNA 7.25259 kcal/mol@LB@Unfolding Energy - sRNA 9.35859 kcal/mol@LB@@LB@Position - mRNA 131 -- 161@LB@Position - sRNA 7 -- 38@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 7 -- 13@LB@ |
97 |
0.009805 |
0.3104 |
b1306 |
pspC |
-10.74 |
0.090670 |
128 -- 139 |
7 -- 18 |
psp operon transcription co-activator |
|
_____________127__________140\n_____________|____________|\n5'-CCG...AGCAA____________AACGU...CGG-3'\n______________AACGGAUGCGCG\n______________|||::|||||||\n______________UUGUUUACGCGC\n3'-UUU...UACUA____________AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
133 -- 139 |
7 -- 13 |
-18.5075 kcal/mol |
6.55818 kcal/mol |
1.20891 kcal/mol |
127 140@LB@ | |@LB@5'-CCG...AGCAA AACGU...CGG-3'@LB@ AACGGAUGCGCG@LB@ |||::|||||||@LB@ UUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.5075 kcal/mol@LB@Unfolding Energy - mRNA 6.55818 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
159 |
0.01499 |
0.3104 |
b2476 |
purC |
-11.66 |
0.062723 |
28 -- 49 |
4 -- 22 |
phosphoribosylaminoimidazole-succinocarboxamide synthetase |
|
_____________27_____________________50\n_____________|______________________|\n5'-GGA...UGAUA_____C____AC__________GCAGG...CAG-3'\n______________UGAUA_GCAA__GUGUGCGUCU\n______________|||||_:|||__:||:||||||\n______________ACUAU_UGUU__UACGCGCAGA\n3'-UUU...CUACU______________________AAG-5'\n_____________|______________________|\n_____________23_____________________3\n |
43 -- 49 |
4 -- 10 |
-20.6907 kcal/mol |
7.77162 kcal/mol |
1.2572 kcal/mol |
27 50@LB@ | |@LB@5'-GGA...UGAUA C AC GCAGG...CAG-3'@LB@ UGAUA GCAA GUGUGCGUCU@LB@ ||||| :||| :||:||||||@LB@ ACUAU UGUU UACGCGCAGA@LB@3'-UUU...CUACU AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -20.6907 kcal/mol@LB@Unfolding Energy - mRNA 7.77162 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 28 -- 49@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 4 -- 10@LB@ |
83 |
0.007683 |
0.3104 |
b4244 |
pyrI |
-7.62 |
0.290375 |
210 -- 222 |
10 -- 21 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________209___________223\n_____________|_____________|\n5'-UUC...CACAC__________U__AGGUU...UCA-3'\n______________GAUAAUAAAU_GC\n______________|||||:||||_||\n______________CUAUUGUUUA_CG\n3'-UUU...UACUA_____________CGCAG...AAG-5'\n_____________|_____________|\n_____________22____________9\n |
213 -- 219 |
12 -- 18 |
-11.1174 kcal/mol |
2.26673 kcal/mol |
1.23076 kcal/mol |
209 223@LB@ | |@LB@5'-UUC...CACAC U AGGUU...UCA-3'@LB@ GAUAAUAAAU GC@LB@ |||||:|||| ||@LB@ CUAUUGUUUA CG@LB@3'-UUU...UACUA CGCAG...AAG-5'@LB@ | |@LB@ 22 9@LB@@LB@@LB@Energy -7.62 kcal/mol@LB@Hybridization Energy -11.1174 kcal/mol@LB@Unfolding Energy - mRNA 2.26673 kcal/mol@LB@Unfolding Energy - sRNA 1.23076 kcal/mol@LB@@LB@Position - mRNA 210 -- 222@LB@Position - sRNA 10 -- 21@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 12 -- 18@LB@ |
129 |
0.01261 |
0.3104 |
b3025 |
qseB |
-10.92 |
0.084347 |
141 -- 152 |
5 -- 17 |
quorum sensing DNA-binding response regulator in two-component regulatory system with QseC |
|
_____________140___________153\n_____________|_____________|\n5'-GUG...GCUGU_____________ACAAC...GUC-3'\n______________ACAGA_GCGCGUU\n______________|||:|_||||||:\n______________UGUUU_CGCGCAG\n3'-UUU...ACUAU_____A_______AAAG-5'\n_____________|_____________|\n_____________18____________4\n |
146 -- 152 |
5 -- 11 |
-15.7823 kcal/mol |
3.63703 kcal/mol |
1.22241 kcal/mol |
140 153@LB@ | |@LB@5'-GUG...GCUGU ACAAC...GUC-3'@LB@ ACAGA GCGCGUU@LB@ |||:| ||||||:@LB@ UGUUU CGCGCAG@LB@3'-UUU...ACUAU A AAAG-5'@LB@ | |@LB@ 18 4@LB@@LB@@LB@Energy -10.92 kcal/mol@LB@Hybridization Energy -15.7823 kcal/mol@LB@Unfolding Energy - mRNA 3.63703 kcal/mol@LB@Unfolding Energy - sRNA 1.22241 kcal/mol@LB@@LB@Position - mRNA 141 -- 152@LB@Position - sRNA 5 -- 17@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 5 -- 11@LB@ |
88 |
0.008928 |
0.3104 |
b0405 |
queA |
-8.89 |
0.184414 |
201 -- 209 |
5 -- 13 |
S-adenosylmethionine:tRNA ribosyltransferase-isomerase |
|
_____________200_______210\n_____________|_________|\n5'-GGG...GUGUC_________ACCGA...GGC-3'\n______________AUGCGCGUU\n______________||||||||:\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
203 -- 209 |
5 -- 11 |
-14.1161 kcal/mol |
4.07268 kcal/mol |
1.15134 kcal/mol |
200 210@LB@ | |@LB@5'-GGG...GUGUC ACCGA...GGC-3'@LB@ AUGCGCGUU@LB@ ||||||||:@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -14.1161 kcal/mol@LB@Unfolding Energy - mRNA 4.07268 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 201 -- 209@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 5 -- 11@LB@ |
190 |
0.01867 |
0.3104 |
b0196 |
rcsF |
-10.27 |
0.109081 |
201 -- 211 |
2 -- 13 |
putative outer membrane protein |
|
_____________200__________212\n_____________|____________|\n5'-AAU...AUACU____________ACCGA...AGC-3'\n______________AUGCGUG_CUUU\n______________|||||:|_||||\n______________UACGCGC_GAAA\n3'-UUU...UUGUU_______A____G-5'\n_____________|____________|\n_____________14___________1\n |
201 -- 207 |
7 -- 13 |
-12.8527 kcal/mol |
1.40833 kcal/mol |
1.17421 kcal/mol |
200 212@LB@ | |@LB@5'-AAU...AUACU ACCGA...AGC-3'@LB@ AUGCGUG CUUU@LB@ |||||:| ||||@LB@ UACGCGC GAAA@LB@3'-UUU...UUGUU A G-5'@LB@ | |@LB@ 14 1@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -12.8527 kcal/mol@LB@Unfolding Energy - mRNA 1.40833 kcal/mol@LB@Unfolding Energy - sRNA 1.17421 kcal/mol@LB@@LB@Position - mRNA 201 -- 211@LB@Position - sRNA 2 -- 13@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 7 -- 13@LB@ |