31 |
0.001974 |
0.2094 |
b1080 |
flgI |
-10.59 |
0.096403 |
87 -- 101 |
7 -- 21 |
putative flagellar basal body protein |
|
_____________86______________102\n_____________|_______________|\n5'-AUU...ACUCA_______________CAUUG...AAA-3'\n______________GGUGGCGGAUGCGCG\n______________|:|::|::|||||||\n______________CUAUUGUUUACGCGC\n3'-UUU...UACUA_______________AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
95 -- 101 |
7 -- 13 |
-22.6939 kcal/mol |
10.8668 kcal/mol |
1.24179 kcal/mol |
86 102@LB@ | |@LB@5'-AUU...ACUCA CAUUG...AAA-3'@LB@ GGUGGCGGAUGCGCG@LB@ |:|::|::|||||||@LB@ CUAUUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -22.6939 kcal/mol@LB@Unfolding Energy - mRNA 10.8668 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 87 -- 101@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 7 -- 13@LB@ |
103 |
0.01026 |
0.3104 |
b1083 |
flgL |
-8.46 |
0.215699 |
195 -- 209 |
5 -- 21 |
flagellar hook-filament junction protein |
|
_____________194_______________210\n_____________|_________________|\n5'-UUG...GGGGA______________U__AGUAC...GUA-3'\n______________GAUAA__GAUGCGU_UC\n______________|||||__:|||||:_||\n______________CUAUU__UUACGCG_AG\n3'-UUU...UACUA_____GU_______C__AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
200 -- 206 |
8 -- 14 |
-13.0743 kcal/mol |
3.36074 kcal/mol |
1.24955 kcal/mol |
194 210@LB@ | |@LB@5'-UUG...GGGGA U AGUAC...GUA-3'@LB@ GAUAA GAUGCGU UC@LB@ ||||| :|||||: ||@LB@ CUAUU UUACGCG AG@LB@3'-UUU...UACUA GU C AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -13.0743 kcal/mol@LB@Unfolding Energy - mRNA 3.36074 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 195 -- 209@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
34 |
0.002145 |
0.2094 |
b1939 |
fliG |
-13.29 |
0.032191 |
145 -- 162 |
6 -- 22 |
flagellar motor switching and energizing component |
|
_____________144________________163\n_____________|__________________|\n5'-AGC...AUGUC_________UCC______GGUGG...AAG-3'\n______________UGAUAACGA___GCGCGU\n______________|||||||:|___||||||\n______________ACUAUUGUU___CGCGCA\n3'-UUU...CUACU_________UA_______GAAAG-5'\n_____________|__________________|\n_____________23_________________5\n |
147 -- 153 |
14 -- 20 |
-19.5862 kcal/mol |
5.04831 kcal/mol |
1.24718 kcal/mol |
144 163@LB@ | |@LB@5'-AGC...AUGUC UCC GGUGG...AAG-3'@LB@ UGAUAACGA GCGCGU@LB@ |||||||:| ||||||@LB@ ACUAUUGUU CGCGCA@LB@3'-UUU...CUACU UA GAAAG-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -19.5862 kcal/mol@LB@Unfolding Energy - mRNA 5.04831 kcal/mol@LB@Unfolding Energy - sRNA 1.24718 kcal/mol@LB@@LB@Position - mRNA 145 -- 162@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 14 -- 20@LB@ |
54 |
0.004897 |
0.3024 |
b1949 |
fliQ |
-8.93 |
0.181731 |
208 -- 239 |
7 -- 38 |
flagellar biosynthesis protein |
|
_____________207_______________________________240\n_____________|_________________________________|\n5'-UUC...GACAC__________UC__________G__C__AA___AUGAA...UUA-3'\n______________CUGAA_UCGG__AUGAUGAUGG_GA_UG__GCG\n______________|||||_||:|__||||||||::_:|_||__|||\n______________GACUU_AGUC__UACUACUAUU_UU_AC__CGC\n3'-UUU...GUAGA_____A____CC__________G__U__G____AGAAAG-5'\n_____________|_________________________________|\n_____________39________________________________6\n |
222 -- 228 |
17 -- 23 |
-27.1148 kcal/mol |
8.82457 kcal/mol |
9.35859 kcal/mol |
207 240@LB@ | |@LB@5'-UUC...GACAC UC G C AA AUGAA...UUA-3'@LB@ CUGAA UCGG AUGAUGAUGG GA UG GCG@LB@ ||||| ||:| ||||||||:: :| || |||@LB@ GACUU AGUC UACUACUAUU UU AC CGC@LB@3'-UUU...GUAGA A CC G U G AGAAAG-5'@LB@ | |@LB@ 39 6@LB@@LB@@LB@Energy -8.93 kcal/mol@LB@Hybridization Energy -27.1148 kcal/mol@LB@Unfolding Energy - mRNA 8.82457 kcal/mol@LB@Unfolding Energy - sRNA 9.35859 kcal/mol@LB@@LB@Position - mRNA 208 -- 239@LB@Position - sRNA 7 -- 38@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 17 -- 23@LB@ |
101 |
0.01005 |
0.3104 |
b3288 |
fmt |
-10.27 |
0.109217 |
249 -- 255 |
5 -- 11 |
10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase |
|
_____________248_____256\n_____________|_______|\n5'-AUU...UUGCA_______AUCUC...UGU-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
249 -- 255 |
5 -- 11 |
-14.5658 kcal/mol |
3.18739 kcal/mol |
1.11145 kcal/mol |
248 256@LB@ | |@LB@5'-AUU...UUGCA AUCUC...UGU-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -14.5658 kcal/mol@LB@Unfolding Energy - mRNA 3.18739 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 249 -- 255@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 5 -- 11@LB@ |
89 |
0.009028 |
0.3104 |
b0529 |
folD |
-8.62 |
0.203566 |
239 -- 251 |
4 -- 17 |
bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase |
|
_____________238____________252\n_____________|______________|\n5'-CAA...GCGCA______________GAAGU...CAC-3'\n______________GCAGGUGCGC_UCU\n______________:||::|||||_|||\n______________UGUUUACGCG_AGA\n3'-UUU...ACUAU__________C___AAG-5'\n_____________|______________|\n_____________18_____________3\n |
242 -- 248 |
8 -- 14 |
-17.587 kcal/mol |
7.73476 kcal/mol |
1.22888 kcal/mol |
238 252@LB@ | |@LB@5'-CAA...GCGCA GAAGU...CAC-3'@LB@ GCAGGUGCGC UCU@LB@ :||::||||| |||@LB@ UGUUUACGCG AGA@LB@3'-UUU...ACUAU C AAG-5'@LB@ | |@LB@ 18 3@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -17.587 kcal/mol@LB@Unfolding Energy - mRNA 7.73476 kcal/mol@LB@Unfolding Energy - sRNA 1.22888 kcal/mol@LB@@LB@Position - mRNA 239 -- 251@LB@Position - sRNA 4 -- 17@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
196 |
0.01921 |
0.3104 |
b2167 |
fruA |
-9.92 |
0.125082 |
150 -- 163 |
5 -- 22 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________149________________164\n_____________|__________________|\n5'-CGC...CGCAA__________________GACUU...AAA-3'\n______________UGAUGGC____GCGCGUC\n______________||||::|____|||||||\n______________ACUAUUG____CGCGCAG\n3'-UUU...CUACU_______UUUA_______AAAG-5'\n_____________|__________________|\n_____________23_________________4\n |
157 -- 163 |
5 -- 11 |
-18.2874 kcal/mol |
7.11819 kcal/mol |
1.25155 kcal/mol |
149 164@LB@ | |@LB@5'-CGC...CGCAA GACUU...AAA-3'@LB@ UGAUGGC GCGCGUC@LB@ ||||::| |||||||@LB@ ACUAUUG CGCGCAG@LB@3'-UUU...CUACU UUUA AAAG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -18.2874 kcal/mol@LB@Unfolding Energy - mRNA 7.11819 kcal/mol@LB@Unfolding Energy - sRNA 1.25155 kcal/mol@LB@@LB@Position - mRNA 150 -- 163@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 5 -- 11@LB@ |
4 |
4.059e-05 |
0.03436 |
b2748 |
ftsB |
-19.92 |
0.001892 |
154 -- 190 |
1 -- 44 |
cell division protein |
|
_____________153___________________________________________191\n_____________|_____________________________________________|\n5'-GGG...UAGAG_______C____G__U_____________________________AGGGG...AUG-3'\n______________UCGUCUU_GGAU_CA_GGGAUGAUGA_______UGC_CGUUUUUC\n______________||:|||:_|:||_||_||||||||||_______|||_|||:||||\n______________AGUAGAG_CUUA_GU_CCCUACUACU_______ACG_GCAGAAAG\n3'-UUU...UUUAA_______A____A_____________AUUGUUU___C________-5'\n_____________|____________________________________________|\n_____________45___________________________________________1\n |
184 -- 190 |
1 -- 7 |
-40.1368 kcal/mol |
10.7611 kcal/mol |
9.45578 kcal/mol |
153 191@LB@ | |@LB@5'-GGG...UAGAG C G U AGGGG...AUG-3'@LB@ UCGUCUU GGAU CA GGGAUGAUGA UGC CGUUUUUC@LB@ ||:|||: |:|| || |||||||||| ||| |||:||||@LB@ AGUAGAG CUUA GU CCCUACUACU ACG GCAGAAAG@LB@3'-UUU...UUUAA A A AUUGUUU C -5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -19.92 kcal/mol@LB@Hybridization Energy -40.1368 kcal/mol@LB@Unfolding Energy - mRNA 10.7611 kcal/mol@LB@Unfolding Energy - sRNA 9.45578 kcal/mol@LB@@LB@Position - mRNA 154 -- 190@LB@Position - sRNA 1 -- 44@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
49 |
0.004401 |
0.299 |
b0093 |
ftsQ |
-10.19 |
0.112476 |
259 -- 274 |
4 -- 20 |
divisome assembly protein membrane anchored protein involved in growth of wall at septum |
|
_____________258_______________275\n_____________|_________________|\n5'-GCU...CCGCA________A________GGCGG...CCG-3'\n______________AUAAUGGA__CGCGUCU\n______________||||:::|__|||||||\n______________UAUUGUUU__GCGCAGA\n3'-UUU...ACUAC________AC_______AAG-5'\n_____________|_________________|\n_____________21________________3\n |
268 -- 274 |
4 -- 10 |
-13.8485 kcal/mol |
2.40331 kcal/mol |
1.25368 kcal/mol |
258 275@LB@ | |@LB@5'-GCU...CCGCA A GGCGG...CCG-3'@LB@ AUAAUGGA CGCGUCU@LB@ ||||:::| |||||||@LB@ UAUUGUUU GCGCAGA@LB@3'-UUU...ACUAC AC AAG-5'@LB@ | |@LB@ 21 3@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -13.8485 kcal/mol@LB@Unfolding Energy - mRNA 2.40331 kcal/mol@LB@Unfolding Energy - sRNA 1.25368 kcal/mol@LB@@LB@Position - mRNA 259 -- 274@LB@Position - sRNA 4 -- 20@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 4 -- 10@LB@ |
187 |
0.01837 |
0.3104 |
b2151 |
galS |
-10.59 |
0.096282 |
222 -- 228 |
5 -- 11 |
galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
|
_____________221_____229\n_____________|_______|\n5'-UCU...AUGUA_______AGGCU...GUG-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
222 -- 228 |
5 -- 11 |
-14.6299 kcal/mol |
2.93004 kcal/mol |
1.11145 kcal/mol |
221 229@LB@ | |@LB@5'-UCU...AUGUA AGGCU...GUG-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -14.6299 kcal/mol@LB@Unfolding Energy - mRNA 2.93004 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 222 -- 228@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 5 -- 11@LB@ |