| 1 |
0 |
0 |
b2687 |
luxS |
-86.29 |
0.000000 |
61 -- 132 |
1 -- 72 |
S-ribosylhomocysteine lyase |
|
_____________60_______________________________________________________________________133\n_____________|________________________________________________________________________|\n5'-GAA...AAAGA________________________________________________________________________AUAUA...UCA-3'\n______________AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC\n______________||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG\n___________3'-________________________________________________________________________-5'\n______________|______________________________________________________________________|\n______________72_____________________________________________________________________1\n |
126 -- 132 |
1 -- 7 |
-138.099 kcal/mol |
30.0464 kcal/mol |
21.7639 kcal/mol |
60 133@LB@ | |@LB@5'-GAA...AAAGA AUAUA...UCA-3'@LB@ AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC@LB@ ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG@LB@ 3'- -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -86.29 kcal/mol@LB@Hybridization Energy -138.099 kcal/mol@LB@Unfolding Energy - mRNA 30.0464 kcal/mol@LB@Unfolding Energy - sRNA 21.7639 kcal/mol@LB@@LB@Position - mRNA 61 -- 132@LB@Position - sRNA 1 -- 72@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 2 |
9.051e-06 |
0.01532 |
b2745 |
truD |
-15.77 |
0.011349 |
54 -- 69 |
2 -- 17 |
tRNA(Glu) pseudouridine(13) synthase |
|
_____________53_______________70\n_____________|________________|\n5'-AAC...AUUCC____________G___AUUGC...UGG-3'\n______________ACAAAUGCGCGU_UUU\n______________||||||||||||_|||\n______________UGUUUACGCGCA_AAA\n3'-UUU...ACUAU____________G___G-5'\n_____________|________________|\n_____________18_______________1\n |
59 -- 65 |
6 -- 12 |
-22.0257 kcal/mol |
5.01487 kcal/mol |
1.23894 kcal/mol |
53 70@LB@ | |@LB@5'-AAC...AUUCC G AUUGC...UGG-3'@LB@ ACAAAUGCGCGU UUU@LB@ |||||||||||| |||@LB@ UGUUUACGCGCA AAA@LB@3'-UUU...ACUAU G G-5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -22.0257 kcal/mol@LB@Unfolding Energy - mRNA 5.01487 kcal/mol@LB@Unfolding Energy - sRNA 1.23894 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 2 -- 17@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 3 |
3.559e-05 |
0.03436 |
b0168 |
map |
-14.62 |
0.018437 |
228 -- 248 |
5 -- 21 |
methionine aminopeptidase |
|
_____________227___________________249\n_____________|_____________________|\n5'-CUU...CAGAA____UCGAAA___________GCUGG...AAC-3'\n______________GAUA______AAAUGCGCGUC\n______________||||______|||||||||||\n______________CUAU______UUUACGCGCAG\n3'-UUU...UACUA____UG_______________AAAG-5'\n_____________|_____________________|\n_____________22____________________4\n |
242 -- 248 |
5 -- 11 |
-19.3611 kcal/mol |
3.48659 kcal/mol |
1.24955 kcal/mol |
227 249@LB@ | |@LB@5'-CUU...CAGAA UCGAAA GCUGG...AAC-3'@LB@ GAUA AAAUGCGCGUC@LB@ |||| |||||||||||@LB@ CUAU UUUACGCGCAG@LB@3'-UUU...UACUA UG AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -19.3611 kcal/mol@LB@Unfolding Energy - mRNA 3.48659 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 228 -- 248@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 4 |
4.059e-05 |
0.03436 |
b2748 |
ftsB |
-19.92 |
0.001892 |
154 -- 190 |
1 -- 44 |
cell division protein |
|
_____________153___________________________________________191\n_____________|_____________________________________________|\n5'-GGG...UAGAG_______C____G__U_____________________________AGGGG...AUG-3'\n______________UCGUCUU_GGAU_CA_GGGAUGAUGA_______UGC_CGUUUUUC\n______________||:|||:_|:||_||_||||||||||_______|||_|||:||||\n______________AGUAGAG_CUUA_GU_CCCUACUACU_______ACG_GCAGAAAG\n3'-UUU...UUUAA_______A____A_____________AUUGUUU___C________-5'\n_____________|____________________________________________|\n_____________45___________________________________________1\n |
184 -- 190 |
1 -- 7 |
-40.1368 kcal/mol |
10.7611 kcal/mol |
9.45578 kcal/mol |
153 191@LB@ | |@LB@5'-GGG...UAGAG C G U AGGGG...AUG-3'@LB@ UCGUCUU GGAU CA GGGAUGAUGA UGC CGUUUUUC@LB@ ||:|||: |:|| || |||||||||| ||| |||:||||@LB@ AGUAGAG CUUA GU CCCUACUACU ACG GCAGAAAG@LB@3'-UUU...UUUAA A A AUUGUUU C -5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -19.92 kcal/mol@LB@Hybridization Energy -40.1368 kcal/mol@LB@Unfolding Energy - mRNA 10.7611 kcal/mol@LB@Unfolding Energy - sRNA 9.45578 kcal/mol@LB@@LB@Position - mRNA 154 -- 190@LB@Position - sRNA 1 -- 44@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 5 |
7.362e-05 |
0.04801 |
b0741 |
pal |
-13.90 |
0.024968 |
103 -- 115 |
3 -- 16 |
peptidoglycan-associated outer membrane lipoprotein |
|
_____________102____________116\n_____________|______________|\n5'-GGA...CGUUU______________CCGGC...GCG-3'\n______________CAAA_GCGCGUCUU\n______________||||_|||||||||\n______________GUUU_CGCGCAGAA\n3'-UUU...CUAUU____A_________AG-5'\n_____________|______________|\n_____________17_____________2\n |
109 -- 115 |
3 -- 9 |
-18.0761 kcal/mol |
2.94526 kcal/mol |
1.22934 kcal/mol |
102 116@LB@ | |@LB@5'-GGA...CGUUU CCGGC...GCG-3'@LB@ CAAA GCGCGUCUU@LB@ |||| |||||||||@LB@ GUUU CGCGCAGAA@LB@3'-UUU...CUAUU A AG-5'@LB@ | |@LB@ 17 2@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -18.0761 kcal/mol@LB@Unfolding Energy - mRNA 2.94526 kcal/mol@LB@Unfolding Energy - sRNA 1.22934 kcal/mol@LB@@LB@Position - mRNA 103 -- 115@LB@Position - sRNA 3 -- 16@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 6 |
9.655e-05 |
0.04801 |
b4175 |
hflC |
-9.47 |
0.148653 |
186 -- 211 |
5 -- 32 |
HflB protease modulator specific for phage lambda cII repressor |
|
_____________185____________________________212\n_____________|______________________________|\n5'-UUA...CAGCG_________________________AA___AGUUA...GUU-3'\n______________UCAGGGG_GA__AUAAC_GAUGCGU__GUC\n______________||||||:_||__|||||_:|||||:__|||\n______________AGUCCCU_CU__UAUUG_UUACGCG__CAG\n3'-UUU...ACUUA_______A__AC_____U____________AAAG-5'\n_____________|______________________________|\n_____________33_____________________________4\n |
200 -- 206 |
8 -- 14 |
-26.2754 kcal/mol |
8.97237 kcal/mol |
7.8362 kcal/mol |
185 212@LB@ | |@LB@5'-UUA...CAGCG AA AGUUA...GUU-3'@LB@ UCAGGGG GA AUAAC GAUGCGU GUC@LB@ ||||||: || ||||| :|||||: |||@LB@ AGUCCCU CU UAUUG UUACGCG CAG@LB@3'-UUU...ACUUA A AC U AAAG-5'@LB@ | |@LB@ 33 4@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -26.2754 kcal/mol@LB@Unfolding Energy - mRNA 8.97237 kcal/mol@LB@Unfolding Energy - sRNA 7.8362 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 5 -- 32@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 7 |
9.926e-05 |
0.04801 |
b1113 |
ldtC |
-15.69 |
0.011765 |
184 -- 223 |
1 -- 45 |
L D-transpeptidase linking Lpp to murein |
|
_____________183___________________________________________224\n_____________|_____________________________________________|\n5'-CGU...UUAUA______A________UU________________A___________UCGCU...UGC-3'\n______________UUUAUU__UGGAUUU___GGUGAUGAU__CAAA__CGCGUUUUUC\n______________||:||:__||:|||:___|:|||||||__||||__|||||:||||\n______________AAGUAG__ACUUAAG___CUACUACUA__GUUU__GCGCAGAAAG\n3'-UUU...UUUUA______AG_______UCC_________UU____AC__________-5'\n_____________|____________________________________________|\n_____________46___________________________________________1\n |
217 -- 223 |
1 -- 7 |
-33.7876 kcal/mol |
8.63912 kcal/mol |
9.46113 kcal/mol |
183 224@LB@ | |@LB@5'-CGU...UUAUA A UU A UCGCU...UGC-3'@LB@ UUUAUU UGGAUUU GGUGAUGAU CAAA CGCGUUUUUC@LB@ ||:||: ||:|||: |:||||||| |||| |||||:||||@LB@ AAGUAG ACUUAAG CUACUACUA GUUU GCGCAGAAAG@LB@3'-UUU...UUUUA AG UCC UU AC -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -15.69 kcal/mol@LB@Hybridization Energy -33.7876 kcal/mol@LB@Unfolding Energy - mRNA 8.63912 kcal/mol@LB@Unfolding Energy - sRNA 9.46113 kcal/mol@LB@@LB@Position - mRNA 184 -- 223@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 8 |
0.000167 |
0.07068 |
b0814 |
ompX |
-11.11 |
0.078421 |
202 -- 223 |
1 -- 22 |
outer membrane protein X |
|
_____________201____________________224\n_____________|______________________|\n5'-CUG...GGUUA___AAAA__U___A________AGCAC...CAC-3'\n______________UGA____AA_UGC_UGUCUUUC\n______________|||____||_|||_:|||||||\n______________ACU____UU_ACG_GCAGAAAG\n3'-UUU...CUACU___AUUG__U___C________-5'\n_____________|_____________________|\n_____________23____________________1\n |
217 -- 223 |
1 -- 7 |
-15.5509 kcal/mol |
3.18554 kcal/mol |
1.25963 kcal/mol |
201 224@LB@ | |@LB@5'-CUG...GGUUA AAAA U A AGCAC...CAC-3'@LB@ UGA AA UGC UGUCUUUC@LB@ ||| || ||| :|||||||@LB@ ACU UU ACG GCAGAAAG@LB@3'-UUU...CUACU AUUG U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.5509 kcal/mol@LB@Unfolding Energy - mRNA 3.18554 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 202 -- 223@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 9 |
0.000195 |
0.07335 |
b1830 |
prc |
-15.09 |
0.015143 |
131 -- 161 |
7 -- 38 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
_____________130______________________________162\n_____________|________________________________|\n5'-CGA...UCCAG___________U___UCUU____U________CAGAA...CGG-3'\n______________CUGAAUUCGGG_AUG____UGAU__GUGCGCG\n______________||||||||:||_|||____|:|:__:||||||\n______________GACUUAAGUCC_UAC____AUUG__UACGCGC\n3'-UUU...GUAGA___________C___UACU____UU_______AGAAAG-5'\n_____________|________________________________|\n_____________39_______________________________6\n |
155 -- 161 |
7 -- 13 |
-31.7028 kcal/mol |
7.25259 kcal/mol |
9.35859 kcal/mol |
130 162@LB@ | |@LB@5'-CGA...UCCAG U UCUU U CAGAA...CGG-3'@LB@ CUGAAUUCGGG AUG UGAU GUGCGCG@LB@ ||||||||:|| ||| |:|: :||||||@LB@ GACUUAAGUCC UAC AUUG UACGCGC@LB@3'-UUU...GUAGA C UACU UU AGAAAG-5'@LB@ | |@LB@ 39 6@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -31.7028 kcal/mol@LB@Unfolding Energy - mRNA 7.25259 kcal/mol@LB@Unfolding Energy - sRNA 9.35859 kcal/mol@LB@@LB@Position - mRNA 131 -- 161@LB@Position - sRNA 7 -- 38@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 10 |
0.0002413 |
0.08171 |
b2594 |
rluD |
-15.70 |
0.011720 |
48 -- 64 |
5 -- 21 |
23S rRNA pseudouridine(1911 1915 1917) synthase |
|
_____________47________________65\n_____________|_________________|\n5'-CCC...CACCA____UUUC_________AUGAC...GUU-3'\n______________GAUA____AUGCGCGUC\n______________||||____|||||||||\n______________CUAU____UACGCGCAG\n3'-UUU...UACUA____UGUU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
58 -- 64 |
5 -- 11 |
-19.7285 kcal/mol |
2.7828 kcal/mol |
1.24955 kcal/mol |
47 65@LB@ | |@LB@5'-CCC...CACCA UUUC AUGAC...GUU-3'@LB@ GAUA AUGCGCGUC@LB@ |||| |||||||||@LB@ CUAU UACGCGCAG@LB@3'-UUU...UACUA UGUU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -15.70 kcal/mol@LB@Hybridization Energy -19.7285 kcal/mol@LB@Unfolding Energy - mRNA 2.7828 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 48 -- 64@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 5 -- 11@LB@ |
