151 |
0.01442 |
0.3104 |
b1395 |
paaH |
-15.43 |
0.013105 |
189 -- 216 |
8 -- 31 |
3-hydroxyadipyl-CoA dehydrogenase NAD+-dependent |
|
_____________188__________________________217\n_____________|____________________________|\n5'-GGC...GUUCA______AAUA_C________________AAACU...UGU-3'\n______________CGGGGA____G_AUGAUGAUAAAUGUGC\n______________|:||||____|_|||||:|:|||||:||\n______________GUCCCU____C_UACUAUUGUUUACGCG\n3'-UUU...CUUAA______A_____________________CAGAAAG-5'\n_____________|____________________________|\n_____________32___________________________7\n |
210 -- 216 |
8 -- 14 |
-28.6523 kcal/mol |
5.47369 kcal/mol |
7.74551 kcal/mol |
188 217@LB@ | |@LB@5'-GGC...GUUCA AAUA C AAACU...UGU-3'@LB@ CGGGGA G AUGAUGAUAAAUGUGC@LB@ |:|||| | |||||:|:|||||:||@LB@ GUCCCU C UACUAUUGUUUACGCG@LB@3'-UUU...CUUAA A CAGAAAG-5'@LB@ | |@LB@ 32 7@LB@@LB@@LB@Energy -15.43 kcal/mol@LB@Hybridization Energy -28.6523 kcal/mol@LB@Unfolding Energy - mRNA 5.47369 kcal/mol@LB@Unfolding Energy - sRNA 7.74551 kcal/mol@LB@@LB@Position - mRNA 189 -- 216@LB@Position - sRNA 8 -- 31@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 8 -- 14@LB@ |
5 |
7.362e-05 |
0.04801 |
b0741 |
pal |
-13.90 |
0.024968 |
103 -- 115 |
3 -- 16 |
peptidoglycan-associated outer membrane lipoprotein |
|
_____________102____________116\n_____________|______________|\n5'-GGA...CGUUU______________CCGGC...GCG-3'\n______________CAAA_GCGCGUCUU\n______________||||_|||||||||\n______________GUUU_CGCGCAGAA\n3'-UUU...CUAUU____A_________AG-5'\n_____________|______________|\n_____________17_____________2\n |
109 -- 115 |
3 -- 9 |
-18.0761 kcal/mol |
2.94526 kcal/mol |
1.22934 kcal/mol |
102 116@LB@ | |@LB@5'-GGA...CGUUU CCGGC...GCG-3'@LB@ CAAA GCGCGUCUU@LB@ |||| |||||||||@LB@ GUUU CGCGCAGAA@LB@3'-UUU...CUAUU A AG-5'@LB@ | |@LB@ 17 2@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -18.0761 kcal/mol@LB@Unfolding Energy - mRNA 2.94526 kcal/mol@LB@Unfolding Energy - sRNA 1.22934 kcal/mol@LB@@LB@Position - mRNA 103 -- 115@LB@Position - sRNA 3 -- 16@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 3 -- 9@LB@ |
42 |
0.002847 |
0.2296 |
b1638 |
pdxH |
-9.07 |
0.172497 |
29 -- 35 |
5 -- 11 |
pyridoxine 5'-phosphate oxidase |
|
_____________28______36\n_____________|_______|\n5'-UCU...CUGGC_______ACACU...CCC-3'\n______________GCGCGUU\n______________||||||:\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
29 -- 35 |
5 -- 11 |
-12.2635 kcal/mol |
2.08033 kcal/mol |
1.11145 kcal/mol |
28 36@LB@ | |@LB@5'-UCU...CUGGC ACACU...CCC-3'@LB@ GCGCGUU@LB@ ||||||:@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -12.2635 kcal/mol@LB@Unfolding Energy - mRNA 2.08033 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 29 -- 35@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 5 -- 11@LB@ |
44 |
0.003062 |
0.2325 |
b3847 |
pepQ |
-9.98 |
0.122201 |
144 -- 157 |
8 -- 21 |
proline dipeptidase |
|
_____________143____________158\n_____________|______________|\n5'-UUG...CUCUG_____AC_______UAAGA...UUC-3'\n______________GAUGA__GAUGUGC\n______________|||:|__:|||:||\n______________CUAUU__UUACGCG\n3'-UUU...UACUA_____GU_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
151 -- 157 |
8 -- 14 |
-13.3112 kcal/mol |
2.09686 kcal/mol |
1.23638 kcal/mol |
143 158@LB@ | |@LB@5'-UUG...CUCUG AC UAAGA...UUC-3'@LB@ GAUGA GAUGUGC@LB@ |||:| :|||:||@LB@ CUAUU UUACGCG@LB@3'-UUU...UACUA GU CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -9.98 kcal/mol@LB@Hybridization Energy -13.3112 kcal/mol@LB@Unfolding Energy - mRNA 2.09686 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 144 -- 157@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 8 -- 14@LB@ |
150 |
0.01436 |
0.3104 |
b3951 |
pflD |
-11.87 |
0.057659 |
67 -- 75 |
5 -- 13 |
putative glycine radical domain-containing pyruvate formate-lyase |
b0823 |
_____________66________76\n_____________|_________|\n5'-GAU...CCAUC_________AACAU...AAA-3'\n______________GUGCGCGUC\n______________:||||||||\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
69 -- 75 |
5 -- 11 |
-16.8274 kcal/mol |
3.80607 kcal/mol |
1.15134 kcal/mol |
66 76@LB@ | |@LB@5'-GAU...CCAUC AACAU...AAA-3'@LB@ GUGCGCGUC@LB@ :||||||||@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -16.8274 kcal/mol@LB@Unfolding Energy - mRNA 3.80607 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 67 -- 75@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 5 -- 11@LB@ |
104 |
0.01032 |
0.3104 |
b1714 |
pheS |
-13.82 |
0.025875 |
273 -- 287 |
5 -- 21 |
phenylalanine tRNA synthetase alpha subunit |
|
_____________272_______________288\n_____________|_________________|\n5'-UUG...CGUUA_________________GAAUA...GUA-3'\n______________GAUAAU__GUGCGCGUC\n______________|||||:__:||||||||\n______________CUAUUG__UACGCGCAG\n3'-UUU...UACUA______UU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
281 -- 287 |
5 -- 11 |
-20.2911 kcal/mol |
5.22554 kcal/mol |
1.24955 kcal/mol |
272 288@LB@ | |@LB@5'-UUG...CGUUA GAAUA...GUA-3'@LB@ GAUAAU GUGCGCGUC@LB@ |||||: :||||||||@LB@ CUAUUG UACGCGCAG@LB@3'-UUU...UACUA UU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -20.2911 kcal/mol@LB@Unfolding Energy - mRNA 5.22554 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 273 -- 287@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 5 -- 11@LB@ |
156 |
0.01464 |
0.3104 |
b4105 |
phnD |
-8.45 |
0.216438 |
196 -- 209 |
4 -- 18 |
phosphonate ABC transporter periplasmic binding protein |
|
_____________195_____________210\n_____________|_______________|\n5'-CCG...AGGAA________AA_____AAGAU...UGA-3'\n______________AACGAAUG__CG_CU\n______________|||:||||__||_||\n______________UUGUUUAC__GC_GA\n3'-UUU...UACUA________GC__A__AAG-5'\n_____________|_______________|\n_____________19______________3\n |
197 -- 203 |
11 -- 17 |
-10.9184 kcal/mol |
1.23392 kcal/mol |
1.22995 kcal/mol |
195 210@LB@ | |@LB@5'-CCG...AGGAA AA AAGAU...UGA-3'@LB@ AACGAAUG CG CU@LB@ |||:|||| || ||@LB@ UUGUUUAC GC GA@LB@3'-UUU...UACUA GC A AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -10.9184 kcal/mol@LB@Unfolding Energy - mRNA 1.23392 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 196 -- 209@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 11 -- 17@LB@ |
23 |
0.001384 |
0.1943 |
b0399 |
phoB |
-10.33 |
0.106753 |
53 -- 63 |
8 -- 18 |
response regulator in two-component regulatory system with PhoR |
|
_____________52__________64\n_____________|___________|\n5'-AGG...ACCCA___________CAUUU...AAG-3'\n______________AACAGAUGUGC\n______________||||:|||:||\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
57 -- 63 |
8 -- 14 |
-14.9736 kcal/mol |
3.44457 kcal/mol |
1.20363 kcal/mol |
52 64@LB@ | |@LB@5'-AGG...ACCCA CAUUU...AAG-3'@LB@ AACAGAUGUGC@LB@ ||||:|||:||@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -14.9736 kcal/mol@LB@Unfolding Energy - mRNA 3.44457 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 53 -- 63@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 8 -- 14@LB@ |
21 |
0.0009524 |
0.1536 |
b0241 |
phoE |
-11.39 |
0.070016 |
174 -- 180 |
5 -- 11 |
outer membrane phosphoporin protein E |
b0929 b2215 b1377 |
_____________173_____181\n_____________|_______|\n5'-AGC...UAUUC_______AAUUA...AUG-3'\n______________GCGCGUU\n______________||||||:\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
174 -- 180 |
5 -- 11 |
-12.879 kcal/mol |
0.378776 kcal/mol |
1.11145 kcal/mol |
173 181@LB@ | |@LB@5'-AGC...UAUUC AAUUA...AUG-3'@LB@ GCGCGUU@LB@ ||||||:@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -12.879 kcal/mol@LB@Unfolding Energy - mRNA 0.378776 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 174 -- 180@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 5 -- 11@LB@ |
52 |
0.004683 |
0.3024 |
b1130 |
phoP |
-12.79 |
0.039529 |
186 -- 208 |
6 -- 31 |
response regulator in two-component regulatory system with PhoQ |
|
_____________185________________________209\n_____________|__________________________|\n5'-GAG...UAAGA_________A________________ACUGG...CCA-3'\n______________CAGGGA_GA__AUAA_AAAUGCGCGU\n______________||||||_||__||||_||||||||||\n______________GUCCCU_CU__UAUU_UUUACGCGCA\n3'-UUU...CUUAA______A__AC____G__________GAAAG-5'\n_____________|__________________________|\n_____________32_________________________5\n |
202 -- 208 |
6 -- 12 |
-26.853 kcal/mol |
6.30535 kcal/mol |
7.75407 kcal/mol |
185 209@LB@ | |@LB@5'-GAG...UAAGA A ACUGG...CCA-3'@LB@ CAGGGA GA AUAA AAAUGCGCGU@LB@ |||||| || |||| ||||||||||@LB@ GUCCCU CU UAUU UUUACGCGCA@LB@3'-UUU...CUUAA A AC G GAAAG-5'@LB@ | |@LB@ 32 5@LB@@LB@@LB@Energy -12.79 kcal/mol@LB@Hybridization Energy -26.853 kcal/mol@LB@Unfolding Energy - mRNA 6.30535 kcal/mol@LB@Unfolding Energy - sRNA 7.75407 kcal/mol@LB@@LB@Position - mRNA 186 -- 208@LB@Position - sRNA 6 -- 31@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |