106 |
0.0109 |
0.3104 |
b2510 |
yfgJ |
-10.53 |
0.098521 |
243 -- 261 |
5 -- 21 |
DUF1407 family protein |
|
_____________242_________________262\n_____________|___________________|\n5'-UAA...AUCAG________CC_________GCCGA...UUU-3'\n______________GAUAACGG__AUGCGCGUU\n______________||||||::__||||||||:\n______________CUAUUGUU__UACGCGCAG\n3'-UUU...UACUA___________________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
255 -- 261 |
5 -- 11 |
-20.9599 kcal/mol |
9.18032 kcal/mol |
1.24955 kcal/mol |
242 262@LB@ | |@LB@5'-UAA...AUCAG CC GCCGA...UUU-3'@LB@ GAUAACGG AUGCGCGUU@LB@ ||||||:: ||||||||:@LB@ CUAUUGUU UACGCGCAG@LB@3'-UUU...UACUA AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -20.9599 kcal/mol@LB@Unfolding Energy - mRNA 9.18032 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 5 -- 11@LB@ |
91 |
0.009339 |
0.3104 |
b2562 |
yfhL |
-11.62 |
0.063873 |
146 -- 160 |
6 -- 20 |
putative 4Fe-4S cluster-containing protein |
|
_____________145_____________161\n_____________|_______________|\n5'-AGC...UCUGA____A__________AUAAU...UUA-3'\n______________GUAA_GAAUGCGCGU\n______________:|||_:|||||||||\n______________UAUU_UUUACGCGCA\n3'-UUU...ACUAC____G__________GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
154 -- 160 |
6 -- 12 |
-16.8242 kcal/mol |
3.96482 kcal/mol |
1.24244 kcal/mol |
145 161@LB@ | |@LB@5'-AGC...UCUGA A AUAAU...UUA-3'@LB@ GUAA GAAUGCGCGU@LB@ :||| :|||||||||@LB@ UAUU UUUACGCGCA@LB@3'-UUU...ACUAC G GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -16.8242 kcal/mol@LB@Unfolding Energy - mRNA 3.96482 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 146 -- 160@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 6 -- 12@LB@ |
72 |
0.006739 |
0.3087 |
b2520 |
yfhM |
-8.19 |
0.237735 |
190 -- 217 |
6 -- 30 |
bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein |
|
_____________189__________________________218\n_____________|____________________________|\n5'-CUC...GUGGC________AAA____AA____UA_____AGCCG...CUU-3'\n______________AGGGAUGA___AUGA__AAGU__CGCGU\n______________||||||||___||:|__||:|__|||||\n______________UCCCUACU___UAUU__UUUA__GCGCA\n3'-UUU...UUAAG________AC_____G_____C______GAAAG-5'\n_____________|____________________________|\n_____________31___________________________5\n |
191 -- 197 |
23 -- 29 |
-19.496 kcal/mol |
3.87755 kcal/mol |
7.4255 kcal/mol |
189 218@LB@ | |@LB@5'-CUC...GUGGC AAA AA UA AGCCG...CUU-3'@LB@ AGGGAUGA AUGA AAGU CGCGU@LB@ |||||||| ||:| ||:| |||||@LB@ UCCCUACU UAUU UUUA GCGCA@LB@3'-UUU...UUAAG AC G C GAAAG-5'@LB@ | |@LB@ 31 5@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -19.496 kcal/mol@LB@Unfolding Energy - mRNA 3.87755 kcal/mol@LB@Unfolding Energy - sRNA 7.4255 kcal/mol@LB@@LB@Position - mRNA 190 -- 217@LB@Position - sRNA 6 -- 30@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 23 -- 29@LB@ |
19 |
0.0006629 |
0.1181 |
b2909 |
ygfB |
-11.13 |
0.077732 |
186 -- 206 |
4 -- 22 |
UPF0149 family protein |
|
_____________185___________________207\n_____________|_____________________|\n5'-AAA...CCCUU___C_________UUA_____AUACA...UCA-3'\n______________UGA_GACGAAUGC___UGUCU\n______________|||_:||:|||||___:||||\n______________ACU_UUGUUUACG___GCAGA\n3'-UUU...CUACU___A_________C_______AAG-5'\n_____________|_____________________|\n_____________23____________________3\n |
192 -- 198 |
10 -- 16 |
-17.2827 kcal/mol |
4.89762 kcal/mol |
1.2572 kcal/mol |
185 207@LB@ | |@LB@5'-AAA...CCCUU C UUA AUACA...UCA-3'@LB@ UGA GACGAAUGC UGUCU@LB@ ||| :||:||||| :||||@LB@ ACU UUGUUUACG GCAGA@LB@3'-UUU...CUACU A C AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -17.2827 kcal/mol@LB@Unfolding Energy - mRNA 4.89762 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 186 -- 206@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
32 |
0.001981 |
0.2094 |
b3110 |
yhaO |
-10.61 |
0.095420 |
268 -- 283 |
7 -- 23 |
putative transporter |
|
_____________267_______________284\n_____________|_________________|\n5'-AAU...AAUGA____G____________AGAAG...UCG-3'\n______________GUGA_AGCGAGUG_GCG\n______________:|||_|:|:|:||_|||\n______________UACU_UUGUUUAC_CGC\n3'-UUU...CCUAC____A________G___AGAAAG-5'\n_____________|_________________|\n_____________24________________6\n |
274 -- 280 |
11 -- 17 |
-15.5882 kcal/mol |
2.45682 kcal/mol |
2.52012 kcal/mol |
267 284@LB@ | |@LB@5'-AAU...AAUGA G AGAAG...UCG-3'@LB@ GUGA AGCGAGUG GCG@LB@ :||| |:|:|:|| |||@LB@ UACU UUGUUUAC CGC@LB@3'-UUU...CCUAC A G AGAAAG-5'@LB@ | |@LB@ 24 6@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -15.5882 kcal/mol@LB@Unfolding Energy - mRNA 2.45682 kcal/mol@LB@Unfolding Energy - sRNA 2.52012 kcal/mol@LB@@LB@Position - mRNA 268 -- 283@LB@Position - sRNA 7 -- 23@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 11 -- 17@LB@ |
186 |
0.01836 |
0.3104 |
b3521 |
yhjC |
-9.62 |
0.140197 |
158 -- 166 |
5 -- 13 |
LysR family putative transcriptional regulator |
|
_____________157_______167\n_____________|_________|\n5'-UUU...GCGAU_________ACUGU...UUU-3'\n______________AUGCGCGUU\n______________||||||||:\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
160 -- 166 |
5 -- 11 |
-14.2497 kcal/mol |
3.47777 kcal/mol |
1.15134 kcal/mol |
157 167@LB@ | |@LB@5'-UUU...GCGAU ACUGU...UUU-3'@LB@ AUGCGCGUU@LB@ ||||||||:@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -14.2497 kcal/mol@LB@Unfolding Energy - mRNA 3.47777 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 158 -- 166@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 5 -- 11@LB@ |
51 |
0.004574 |
0.3024 |
b3529 |
yhjK |
-9.99 |
0.121635 |
195 -- 213 |
1 -- 18 |
cyclic-di-GMP phosphodiesterase |
|
_____________194_________________214\n_____________|___________________|\n5'-AGC...GGGGA_____UU_______AAG__GCUCG...AUC-3'\n______________GACAA__UGCGCGU___UC\n______________:||||__|||||||___||\n______________UUGUU__ACGCGCA___AG\n3'-UUU...UACUA_____U________GAA__-5'\n_____________|__________________|\n_____________19_________________1\n |
202 -- 208 |
6 -- 12 |
-16.8324 kcal/mol |
5.6017 kcal/mol |
1.24077 kcal/mol |
194 214@LB@ | |@LB@5'-AGC...GGGGA UU AAG GCUCG...AUC-3'@LB@ GACAA UGCGCGU UC@LB@ :|||| ||||||| ||@LB@ UUGUU ACGCGCA AG@LB@3'-UUU...UACUA U GAA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -9.99 kcal/mol@LB@Hybridization Energy -16.8324 kcal/mol@LB@Unfolding Energy - mRNA 5.6017 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 195 -- 213@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
169 |
0.01667 |
0.3104 |
b3575 |
yiaK |
-9.90 |
0.125874 |
198 -- 219 |
8 -- 29 |
2 3-diketo-L-gulonate reductase NADH-dependent |
|
_____________197____________________220\n_____________|______________________|\n5'-UUU...AGCCU_______AA______UU__A__AGUUA...UCG-3'\n______________GGGAUGA__GUGACA__UG_GC\n______________|||||||__:|:|||__||_||\n______________CCCUACU__UAUUGU__AC_CG\n3'-UUU...UAAGU_______AC______UU__G__CAGAAAG-5'\n_____________|______________________|\n_____________30_____________________7\n |
198 -- 204 |
23 -- 29 |
-23.0827 kcal/mol |
5.7681 kcal/mol |
7.41331 kcal/mol |
197 220@LB@ | |@LB@5'-UUU...AGCCU AA UU A AGUUA...UCG-3'@LB@ GGGAUGA GUGACA UG GC@LB@ ||||||| :|:||| || ||@LB@ CCCUACU UAUUGU AC CG@LB@3'-UUU...UAAGU AC UU G CAGAAAG-5'@LB@ | |@LB@ 30 7@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -23.0827 kcal/mol@LB@Unfolding Energy - mRNA 5.7681 kcal/mol@LB@Unfolding Energy - sRNA 7.41331 kcal/mol@LB@@LB@Position - mRNA 198 -- 219@LB@Position - sRNA 8 -- 29@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 23 -- 29@LB@ |
199 |
0.01944 |
0.3104 |
b3657 |
yicJ |
-13.22 |
0.033173 |
129 -- 161 |
8 -- 45 |
putative transporter |
|
_____________128_____________________________________162\n_____________|_______________________________________|\n5'-CAG...GAAUA_________CA_____________UU____A________UAUCG...UGU-3'\n______________UUCG_CUCU_____CAGGGAUGGU____AC_AAAUGCGU\n______________|||:_||||_____||||||||:|____||_|||||||:\n______________AAGU_GAGA_____GUCCCUACUA____UG_UUUACGCG\n3'-UUU...UUUUA____A____CUUAA__________CUAU___________CAGAAAG-5'\n_____________|_______________________________________|\n_____________46______________________________________7\n |
155 -- 161 |
8 -- 14 |
-30.3918 kcal/mol |
7.7216 kcal/mol |
9.45195 kcal/mol |
128 162@LB@ | |@LB@5'-CAG...GAAUA CA UU A UAUCG...UGU-3'@LB@ UUCG CUCU CAGGGAUGGU AC AAAUGCGU@LB@ |||: |||| ||||||||:| || |||||||:@LB@ AAGU GAGA GUCCCUACUA UG UUUACGCG@LB@3'-UUU...UUUUA A CUUAA CUAU CAGAAAG-5'@LB@ | |@LB@ 46 7@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -30.3918 kcal/mol@LB@Unfolding Energy - mRNA 7.7216 kcal/mol@LB@Unfolding Energy - sRNA 9.45195 kcal/mol@LB@@LB@Position - mRNA 129 -- 161@LB@Position - sRNA 8 -- 45@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 8 -- 14@LB@ |
137 |
0.01327 |
0.3104 |
b3858 |
yihD |
-10.36 |
0.105347 |
5 -- 11 |
5 -- 11 |
DUF1040 protein YihD |
|
_____________4_______12\n_____________|_______|\n_______5'-AUAA_______AGCGA...CGA-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
5 -- 11 |
5 -- 11 |
-14.974 kcal/mol |
3.50324 kcal/mol |
1.11145 kcal/mol |
4 12@LB@ | |@LB@ 5'-AUAA AGCGA...CGA-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -14.974 kcal/mol@LB@Unfolding Energy - mRNA 3.50324 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 5 -- 11@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 5 -- 11@LB@ |