118 |
0.01199 |
0.3104 |
b2573 |
rpoE |
-10.72 |
0.091300 |
77 -- 87 |
8 -- 18 |
RNA polymerase sigma E factor |
|
_____________76__________88\n_____________|___________|\n5'-ACA...ACAAA___________UACGG...UGG-3'\n______________AACAGAUGCGU\n______________||||:|||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
81 -- 87 |
8 -- 14 |
-15.0531 kcal/mol |
3.12642 kcal/mol |
1.20363 kcal/mol |
76 88@LB@ | |@LB@5'-ACA...ACAAA UACGG...UGG-3'@LB@ AACAGAUGCGU@LB@ ||||:|||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.0531 kcal/mol@LB@Unfolding Energy - mRNA 3.12642 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 77 -- 87@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 8 -- 14@LB@ |
141 |
0.01345 |
0.3104 |
b3311 |
rpsQ |
-8.13 |
0.242987 |
140 -- 150 |
8 -- 18 |
30S ribosomal subunit protein S17 |
|
_____________139_________151\n_____________|___________|\n5'-GGU...GUUGA___________CGCGA...UCU-3'\n______________AGCAAGUGCGU\n______________|:|||:||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
144 -- 150 |
8 -- 14 |
-14.6725 kcal/mol |
5.33741 kcal/mol |
1.20363 kcal/mol |
139 151@LB@ | |@LB@5'-GGU...GUUGA CGCGA...UCU-3'@LB@ AGCAAGUGCGU@LB@ |:|||:||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -8.13 kcal/mol@LB@Hybridization Energy -14.6725 kcal/mol@LB@Unfolding Energy - mRNA 5.33741 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 140 -- 150@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 8 -- 14@LB@ |
124 |
0.0124 |
0.3104 |
b1860 |
ruvB |
-8.20 |
0.236824 |
252 -- 265 |
8 -- 20 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________251____________266\n_____________|______________|\n5'-ACG...AAGAU_________C____CAUUC...GUC-3'\n______________GUAGCAGAU_GCGC\n______________:||:||:||_||||\n______________UAUUGUUUA_CGCG\n3'-UUU...ACUAC______________CAGAAAG-5'\n_____________|______________|\n_____________21_____________7\n |
252 -- 258 |
14 -- 20 |
-14.7986 kcal/mol |
5.36112 kcal/mol |
1.23367 kcal/mol |
251 266@LB@ | |@LB@5'-ACG...AAGAU C CAUUC...GUC-3'@LB@ GUAGCAGAU GCGC@LB@ :||:||:|| ||||@LB@ UAUUGUUUA CGCG@LB@3'-UUU...ACUAC CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -8.20 kcal/mol@LB@Hybridization Energy -14.7986 kcal/mol@LB@Unfolding Energy - mRNA 5.36112 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 252 -- 265@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 14 -- 20@LB@ |
179 |
0.01766 |
0.3104 |
b0377 |
sbmA |
-9.49 |
0.147268 |
6 -- 15 |
3 -- 12 |
peptide antibiotic transporter |
b1496 |
_____________5__________16\n_____________|__________|\n______5'-GAUCC_______G__AAUCC...ACU-3'\n______________UGCGCGU_UU\n______________|||||||_||\n______________ACGCGCA_AA\n3'-UUU...UGUUU_______G__AG-5'\n_____________|__________|\n_____________13_________2\n |
6 -- 12 |
6 -- 12 |
-14.1156 kcal/mol |
3.45883 kcal/mol |
1.16529 kcal/mol |
5 16@LB@ | |@LB@ 5'-GAUCC G AAUCC...ACU-3'@LB@ UGCGCGU UU@LB@ ||||||| ||@LB@ ACGCGCA AA@LB@3'-UUU...UGUUU G AG-5'@LB@ | |@LB@ 13 2@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -14.1156 kcal/mol@LB@Unfolding Energy - mRNA 3.45883 kcal/mol@LB@Unfolding Energy - sRNA 1.16529 kcal/mol@LB@@LB@Position - mRNA 6 -- 15@LB@Position - sRNA 3 -- 12@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 6 -- 12@LB@ |
107 |
0.01107 |
0.3104 |
b0723 |
sdhA |
-7.08 |
0.348281 |
169 -- 200 |
7 -- 42 |
succinate dehydrogenase flavoprotein subunit |
|
_____________168__________________________________201\n_____________|____________________________________|\n5'-GGU...ACGUG____A________UU_______UG____________AUGAA...GUG-3'\n______________AUUU_UGGAUUCG___GUGGUG_____GGGUGUGUG\n______________||:|_||:||||:___:||:||_____:::||:|:|\n______________UAGA_ACUUAAGU___UACUAC_____UUUACGCGC\n3'-UUU...UAAAG____G________CCC______UAUUG_________AGAAAG-5'\n_____________|____________________________________|\n_____________43___________________________________6\n |
194 -- 200 |
7 -- 13 |
-22.2639 kcal/mol |
5.75915 kcal/mol |
9.42962 kcal/mol |
168 201@LB@ | |@LB@5'-GGU...ACGUG A UU UG AUGAA...GUG-3'@LB@ AUUU UGGAUUCG GUGGUG GGGUGUGUG@LB@ ||:| ||:||||: :||:|| :::||:|:|@LB@ UAGA ACUUAAGU UACUAC UUUACGCGC@LB@3'-UUU...UAAAG G CCC UAUUG AGAAAG-5'@LB@ | |@LB@ 43 6@LB@@LB@@LB@Energy -7.08 kcal/mol@LB@Hybridization Energy -22.2639 kcal/mol@LB@Unfolding Energy - mRNA 5.75915 kcal/mol@LB@Unfolding Energy - sRNA 9.42962 kcal/mol@LB@@LB@Position - mRNA 169 -- 200@LB@Position - sRNA 7 -- 42@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 7 -- 13@LB@ |
145 |
0.01404 |
0.3104 |
b0721 |
sdhC |
-10.79 |
0.088833 |
202 -- 215 |
9 -- 22 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________201____________216\n_____________|______________|\n5'-UCC...AUUCA______G_______AAAAA...CCG-3'\n______________UGAUAA_AAAUGUG\n______________||||||_|||||:|\n______________ACUAUU_UUUACGC\n3'-UUU...CUACU______G_______GCAGAAAG-5'\n_____________|______________|\n_____________23_____________8\n |
209 -- 215 |
9 -- 15 |
-14.1232 kcal/mol |
2.09271 kcal/mol |
1.23827 kcal/mol |
201 216@LB@ | |@LB@5'-UCC...AUUCA G AAAAA...CCG-3'@LB@ UGAUAA AAAUGUG@LB@ |||||| |||||:|@LB@ ACUAUU UUUACGC@LB@3'-UUU...CUACU G GCAGAAAG-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -14.1232 kcal/mol@LB@Unfolding Energy - mRNA 2.09271 kcal/mol@LB@Unfolding Energy - sRNA 1.23827 kcal/mol@LB@@LB@Position - mRNA 202 -- 215@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 9 -- 15@LB@ |
138 |
0.01331 |
0.3104 |
b2897 |
sdhE |
-11.73 |
0.060976 |
261 -- 284 |
1 -- 21 |
flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair |
|
_____________260_______________________285\n_____________|_________________________|\n5'-GUA...AACUC____UUU___UC_____________GAACA...ACA-3'\n______________GAUA___CAA__AUGC_CGUUUUUC\n______________||||___|||__||||_|||:||||\n______________CUAU___GUU__UACG_GCAGAAAG\n3'-UUU...UACUA____U___________C________-5'\n_____________|________________________|\n_____________22_______________________1\n |
278 -- 284 |
1 -- 7 |
-16.4732 kcal/mol |
3.48371 kcal/mol |
1.25763 kcal/mol |
260 285@LB@ | |@LB@5'-GUA...AACUC UUU UC GAACA...ACA-3'@LB@ GAUA CAA AUGC CGUUUUUC@LB@ |||| ||| |||| |||:||||@LB@ CUAU GUU UACG GCAGAAAG@LB@3'-UUU...UACUA U C -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -16.4732 kcal/mol@LB@Unfolding Energy - mRNA 3.48371 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 261 -- 284@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 1 -- 7@LB@ |
48 |
0.00405 |
0.2857 |
b0409 |
secF |
-13.37 |
0.031213 |
166 -- 172 |
5 -- 11 |
SecYEG protein translocase auxillary subunit |
|
_____________165_____173\n_____________|_______|\n5'-CUU...GGCAA_______AAGAA...UGU-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
166 -- 172 |
5 -- 11 |
-14.9857 kcal/mol |
0.509172 kcal/mol |
1.11145 kcal/mol |
165 173@LB@ | |@LB@5'-CUU...GGCAA AAGAA...UGU-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -14.9857 kcal/mol@LB@Unfolding Energy - mRNA 0.509172 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 166 -- 172@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 5 -- 11@LB@ |
123 |
0.01235 |
0.3104 |
b0097 |
secM |
-7.65 |
0.286972 |
189 -- 203 |
7 -- 21 |
regulator of secA translation |
|
_____________188_____________204\n_____________|_______________|\n5'-UGG...AUCGG________UAA____AGUGG...CGC-3'\n______________GAUGGCAA___CGUG\n______________|||::|||___||:|\n______________CUAUUGUU___GCGC\n3'-UUU...UACUA________UAC____AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
190 -- 196 |
14 -- 20 |
-12.5088 kcal/mol |
3.61266 kcal/mol |
1.24179 kcal/mol |
188 204@LB@ | |@LB@5'-UGG...AUCGG UAA AGUGG...CGC-3'@LB@ GAUGGCAA CGUG@LB@ |||::||| ||:|@LB@ CUAUUGUU GCGC@LB@3'-UUU...UACUA UAC AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -12.5088 kcal/mol@LB@Unfolding Energy - mRNA 3.61266 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 189 -- 203@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 14 -- 20@LB@ |
143 |
0.01362 |
0.3104 |
b3284 |
smg |
-7.50 |
0.302399 |
64 -- 82 |
5 -- 21 |
DUF494 family putative periplasmic protein |
|
_____________63__________________83\n_____________|___________________|\n5'-UUC...GAUGA_______CC__U__A____GUCGC...CAG-3'\n______________GGUAACA__UG_UG_CGUC\n______________|:|||||__||_:|_||||\n______________CUAUUGU__AC_GC_GCAG\n3'-UUU...UACUA_______UU__________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
64 -- 70 |
15 -- 21 |
-13.2614 kcal/mol |
4.51132 kcal/mol |
1.24955 kcal/mol |
63 83@LB@ | |@LB@5'-UUC...GAUGA CC U A GUCGC...CAG-3'@LB@ GGUAACA UG UG CGUC@LB@ |:||||| || :| ||||@LB@ CUAUUGU AC GC GCAG@LB@3'-UUU...UACUA UU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -13.2614 kcal/mol@LB@Unfolding Energy - mRNA 4.51132 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 64 -- 82@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 15 -- 21@LB@ |