136 |
0.01311 |
0.3104 |
b0694 |
kdpE |
-14.36 |
0.020608 |
275 -- 287 |
2 -- 14 |
response regulator in two-component regulatory system with KdpD |
|
_____________274___________288\n_____________|_____________|\n5'-ACG...GACGG_____________GAGGC...CGC-3'\n______________GAUGCGCGUCUUU\n______________:||||||||||||\n______________UUACGCGCAGAAA\n3'-UUU...AUUGU_____________G-5'\n_____________|_____________|\n_____________15____________1\n |
281 -- 287 |
2 -- 8 |
-20.3279 kcal/mol |
4.79291 kcal/mol |
1.17514 kcal/mol |
274 288@LB@ | |@LB@5'-ACG...GACGG GAGGC...CGC-3'@LB@ GAUGCGCGUCUUU@LB@ :||||||||||||@LB@ UUACGCGCAGAAA@LB@3'-UUU...AUUGU G-5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -20.3279 kcal/mol@LB@Unfolding Energy - mRNA 4.79291 kcal/mol@LB@Unfolding Energy - sRNA 1.17514 kcal/mol@LB@@LB@Position - mRNA 275 -- 287@LB@Position - sRNA 2 -- 14@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 2 -- 8@LB@ |
12 |
0.0003263 |
0.08948 |
b4036 |
lamB |
-12.21 |
0.050157 |
189 -- 218 |
8 -- 32 |
maltose outer membrane porin (maltoporin) |
|
_____________188____________________________219\n_____________|______________________________|\n5'-CGC...AUGAC_____A___A_A________UACUC_____AAACU...GUU-3'\n______________UCAGG_GAU_G_AUGAUGAU_____UGCGC\n______________|||||_|||_|_|||||:|:_____|||||\n______________AGUCC_CUA_C_UACUAUUG_____ACGCG\n3'-UUU...ACUUA____________________UUU_______CAGAAAG-5'\n_____________|______________________________|\n_____________33_____________________________7\n |
202 -- 208 |
16 -- 22 |
-24.7132 kcal/mol |
4.6775 kcal/mol |
7.82314 kcal/mol |
188 219@LB@ | |@LB@5'-CGC...AUGAC A A A UACUC AAACU...GUU-3'@LB@ UCAGG GAU G AUGAUGAU UGCGC@LB@ ||||| ||| | |||||:|: |||||@LB@ AGUCC CUA C UACUAUUG ACGCG@LB@3'-UUU...ACUUA UUU CAGAAAG-5'@LB@ | |@LB@ 33 7@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -24.7132 kcal/mol@LB@Unfolding Energy - mRNA 4.6775 kcal/mol@LB@Unfolding Energy - sRNA 7.82314 kcal/mol@LB@@LB@Position - mRNA 189 -- 218@LB@Position - sRNA 8 -- 32@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 16 -- 22@LB@ |
7 |
9.926e-05 |
0.04801 |
b1113 |
ldtC |
-15.69 |
0.011765 |
184 -- 223 |
1 -- 45 |
L D-transpeptidase linking Lpp to murein |
|
_____________183___________________________________________224\n_____________|_____________________________________________|\n5'-CGU...UUAUA______A________UU________________A___________UCGCU...UGC-3'\n______________UUUAUU__UGGAUUU___GGUGAUGAU__CAAA__CGCGUUUUUC\n______________||:||:__||:|||:___|:|||||||__||||__|||||:||||\n______________AAGUAG__ACUUAAG___CUACUACUA__GUUU__GCGCAGAAAG\n3'-UUU...UUUUA______AG_______UCC_________UU____AC__________-5'\n_____________|____________________________________________|\n_____________46___________________________________________1\n |
217 -- 223 |
1 -- 7 |
-33.7876 kcal/mol |
8.63912 kcal/mol |
9.46113 kcal/mol |
183 224@LB@ | |@LB@5'-CGU...UUAUA A UU A UCGCU...UGC-3'@LB@ UUUAUU UGGAUUU GGUGAUGAU CAAA CGCGUUUUUC@LB@ ||:||: ||:|||: |:||||||| |||| |||||:||||@LB@ AAGUAG ACUUAAG CUACUACUA GUUU GCGCAGAAAG@LB@3'-UUU...UUUUA AG UCC UU AC -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -15.69 kcal/mol@LB@Hybridization Energy -33.7876 kcal/mol@LB@Unfolding Energy - mRNA 8.63912 kcal/mol@LB@Unfolding Energy - sRNA 9.46113 kcal/mol@LB@@LB@Position - mRNA 184 -- 223@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
26 |
0.001545 |
0.1943 |
b1678 |
ldtE |
-10.42 |
0.102915 |
208 -- 217 |
2 -- 11 |
murein L D-transpeptidase |
|
_____________207________218\n_____________|__________|\n5'-UCU...GAAAC__________GCUUA...GCC-3'\n______________GCGCGUCUUU\n______________||||||||||\n______________CGCGCAGAAA\n3'-UUU...GUUUA__________G-5'\n_____________|__________|\n_____________12_________1\n |
211 -- 217 |
2 -- 8 |
-16.5846 kcal/mol |
4.99595 kcal/mol |
1.16977 kcal/mol |
207 218@LB@ | |@LB@5'-UCU...GAAAC GCUUA...GCC-3'@LB@ GCGCGUCUUU@LB@ ||||||||||@LB@ CGCGCAGAAA@LB@3'-UUU...GUUUA G-5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -16.5846 kcal/mol@LB@Unfolding Energy - mRNA 4.99595 kcal/mol@LB@Unfolding Energy - sRNA 1.16977 kcal/mol@LB@@LB@Position - mRNA 208 -- 217@LB@Position - sRNA 2 -- 11@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 2 -- 8@LB@ |
78 |
0.007118 |
0.3087 |
b1118 |
lolE |
-12.65 |
0.041861 |
19 -- 36 |
6 -- 21 |
lipoprotein-releasing system transmembrane protein |
|
_____________18_________________37\n_____________|__________________|\n5'-CUG...CUACC______CUC_________AACGC...GCA-3'\n______________GGUAAC___GAUGCGCGU\n______________|:||||___:||||||||\n______________CUAUUG___UUACGCGCA\n3'-UUU...UACUA______U___________GAAAG-5'\n_____________|__________________|\n_____________22_________________5\n |
30 -- 36 |
6 -- 12 |
-20.2716 kcal/mol |
6.37224 kcal/mol |
1.24519 kcal/mol |
18 37@LB@ | |@LB@5'-CUG...CUACC CUC AACGC...GCA-3'@LB@ GGUAAC GAUGCGCGU@LB@ |:|||| :||||||||@LB@ CUAUUG UUACGCGCA@LB@3'-UUU...UACUA U GAAAG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -20.2716 kcal/mol@LB@Unfolding Energy - mRNA 6.37224 kcal/mol@LB@Unfolding Energy - sRNA 1.24519 kcal/mol@LB@@LB@Position - mRNA 19 -- 36@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 6 -- 12@LB@ |
61 |
0.005608 |
0.3084 |
b2174 |
lpxT |
-9.09 |
0.171357 |
170 -- 179 |
1 -- 10 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________169________180\n_____________|__________|\n5'-GAA...UUGCC__________AGUAA...CGA-3'\n______________UGCGUUUUUC\n______________:||||:||||\n______________GCGCAGAAAG\n3'-UUU...UUUAC__________-5'\n_____________|_________|\n_____________11________1\n |
173 -- 179 |
1 -- 7 |
-13.1644 kcal/mol |
2.90849 kcal/mol |
1.16635 kcal/mol |
169 180@LB@ | |@LB@5'-GAA...UUGCC AGUAA...CGA-3'@LB@ UGCGUUUUUC@LB@ :||||:||||@LB@ GCGCAGAAAG@LB@3'-UUU...UUUAC -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -9.09 kcal/mol@LB@Hybridization Energy -13.1644 kcal/mol@LB@Unfolding Energy - mRNA 2.90849 kcal/mol@LB@Unfolding Energy - sRNA 1.16635 kcal/mol@LB@@LB@Position - mRNA 170 -- 179@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 1 -- 7@LB@ |
41 |
0.00276 |
0.2279 |
b0889 |
lrp |
-10.49 |
0.100208 |
207 -- 221 |
8 -- 21 |
leucine-responsive global transcriptional regulator |
|
_____________206_____________222\n_____________|_______________|\n5'-GUG...UGGUA_________AA____CCUGG...AGC-3'\n______________GAUAGCAAG__GCGC\n______________||||:|||:__||||\n______________CUAUUGUUU__CGCG\n3'-UUU...UACUA_________A_____CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
209 -- 215 |
13 -- 19 |
-15.2704 kcal/mol |
3.5472 kcal/mol |
1.23638 kcal/mol |
206 222@LB@ | |@LB@5'-GUG...UGGUA AA CCUGG...AGC-3'@LB@ GAUAGCAAG GCGC@LB@ ||||:|||: ||||@LB@ CUAUUGUUU CGCG@LB@3'-UUU...UACUA A CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -15.2704 kcal/mol@LB@Unfolding Energy - mRNA 3.5472 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 207 -- 221@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 13 -- 19@LB@ |
163 |
0.0151 |
0.3104 |
b1517 |
lsrF |
-8.60 |
0.205199 |
166 -- 179 |
8 -- 21 |
putative autoinducer-2 (AI-2) aldolase |
|
_____________165____________180\n_____________|______________|\n5'-AAA...AAUAC___UU_U_______AUUAC...AUU-3'\n______________GAU__C_GAUGUGC\n______________|||__|_:|||:||\n______________CUA__G_UUACGCG\n3'-UUU...UACUA___UU_U_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
173 -- 179 |
8 -- 14 |
-12.6785 kcal/mol |
2.84069 kcal/mol |
1.23638 kcal/mol |
165 180@LB@ | |@LB@5'-AAA...AAUAC UU U AUUAC...AUU-3'@LB@ GAU C GAUGUGC@LB@ ||| | :|||:||@LB@ CUA G UUACGCG@LB@3'-UUU...UACUA UU U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.6785 kcal/mol@LB@Unfolding Energy - mRNA 2.84069 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 166 -- 179@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 8 -- 14@LB@ |
171 |
0.01687 |
0.3104 |
b1512 |
lsrR |
-11.43 |
0.068975 |
231 -- 262 |
7 -- 31 |
lsr operon transcriptional repressor |
b4295 |
_____________230______________________________263\n_____________|________________________________|\n5'-GCU...CAGAA______AUGUG___A__AG_______C_____GAUCG...AGA-3'\n______________CAGGGA_____UGA_GA__AACAGGU_GCGCG\n______________||||||_____|||_||__||||::|_|||||\n______________GUCCCU_____ACU_CU__UUGUUUA_CGCGC\n3'-UUU...CUUAA______________A__A______________AGAAAG-5'\n_____________|________________________________|\n_____________32_______________________________6\n |
250 -- 256 |
12 -- 18 |
-27.0439 kcal/mol |
7.86672 kcal/mol |
7.75103 kcal/mol |
230 263@LB@ | |@LB@5'-GCU...CAGAA AUGUG A AG C GAUCG...AGA-3'@LB@ CAGGGA UGA GA AACAGGU GCGCG@LB@ |||||| ||| || ||||::| |||||@LB@ GUCCCU ACU CU UUGUUUA CGCGC@LB@3'-UUU...CUUAA A A AGAAAG-5'@LB@ | |@LB@ 32 6@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -27.0439 kcal/mol@LB@Unfolding Energy - mRNA 7.86672 kcal/mol@LB@Unfolding Energy - sRNA 7.75103 kcal/mol@LB@@LB@Position - mRNA 231 -- 262@LB@Position - sRNA 7 -- 31@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 12 -- 18@LB@ |
1 |
0 |
0 |
b2687 |
luxS |
-86.29 |
0.000000 |
61 -- 132 |
1 -- 72 |
S-ribosylhomocysteine lyase |
|
_____________60_______________________________________________________________________133\n_____________|________________________________________________________________________|\n5'-GAA...AAAGA________________________________________________________________________AUAUA...UCA-3'\n______________AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC\n______________||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG\n___________3'-________________________________________________________________________-5'\n______________|______________________________________________________________________|\n______________72_____________________________________________________________________1\n |
126 -- 132 |
1 -- 7 |
-138.099 kcal/mol |
30.0464 kcal/mol |
21.7639 kcal/mol |
60 133@LB@ | |@LB@5'-GAA...AAAGA AUAUA...UCA-3'@LB@ AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC@LB@ ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG@LB@ 3'- -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -86.29 kcal/mol@LB@Hybridization Energy -138.099 kcal/mol@LB@Unfolding Energy - mRNA 30.0464 kcal/mol@LB@Unfolding Energy - sRNA 21.7639 kcal/mol@LB@@LB@Position - mRNA 61 -- 132@LB@Position - sRNA 1 -- 72@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 1 -- 7@LB@ |