54 |
0.01118 |
0.6177 |
b0127 |
yadG |
-7.27 |
0.144346 |
282 -- 299 |
40 -- 55 |
putative ABC transporter ATPase |
|
_____________281________________300\n_____________|__________________|\n5'-UGU...UGCAG_______C___U______U-3'\n______________GUCGAAG_GGG_GAUUUU\n______________|||:|||_:||_:||||:\n______________CAGUUUC_UCC_UUAAAG\n3'-UUU...CCGGG__________________UAAAA...ACA-5'\n_____________|__________________|\n_____________56_________________39\n |
282 -- 288 |
49 -- 55 |
-13.6497 kcal/mol |
5.35692 kcal/mol |
1.01784 kcal/mol |
281 300@LB@ | |@LB@5'-UGU...UGCAG C U U-3'@LB@ GUCGAAG GGG GAUUUU@LB@ |||:||| :|| :||||:@LB@ CAGUUUC UCC UUAAAG@LB@3'-UUU...CCGGG UAAAA...ACA-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -7.27 kcal/mol@LB@Hybridization Energy -13.6497 kcal/mol@LB@Unfolding Energy - mRNA 5.35692 kcal/mol@LB@Unfolding Energy - sRNA 1.01784 kcal/mol@LB@@LB@Position - mRNA 282 -- 299@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 49 -- 55@LB@ |
55 |
0.01149 |
0.6177 |
b3287 |
def |
-9.61 |
0.049470 |
133 -- 146 |
41 -- 54 |
peptide deformylase |
|
_____________132____________147\n_____________|______________|\n5'-AUA...GUCAA______________GUCUA...AUG-3'\n______________UCAGAGGGGGAUUU\n______________|||:||:||:||||\n______________AGUUUCUCCUUAAA\n3'-UUU...CGGGC______________GUAAA...ACA-5'\n_____________|______________|\n_____________55_____________40\n |
140 -- 146 |
41 -- 47 |
-17.2173 kcal/mol |
6.66439 kcal/mol |
0.946064 kcal/mol |
132 147@LB@ | |@LB@5'-AUA...GUCAA GUCUA...AUG-3'@LB@ UCAGAGGGGGAUUU@LB@ |||:||:||:||||@LB@ AGUUUCUCCUUAAA@LB@3'-UUU...CGGGC GUAAA...ACA-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -17.2173 kcal/mol@LB@Unfolding Energy - mRNA 6.66439 kcal/mol@LB@Unfolding Energy - sRNA 0.946064 kcal/mol@LB@@LB@Position - mRNA 133 -- 146@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 41 -- 47@LB@ |
56 |
0.01199 |
0.6177 |
b0836 |
bssR |
-10.68 |
0.029916 |
18 -- 32 |
42 -- 55 |
repressor of biofilm formation by indole transport regulation |
|
_____________17______________33\n_____________|_______________|\n5'-AUU...GAAAG_______C_______CUACA...ACA-3'\n______________GUCAGGG_AGGGAUU\n______________||||::|_|||:|||\n______________CAGUUUC_UCCUUAA\n3'-UUU...CCGGG_______________AGUAA...ACA-5'\n_____________|_______________|\n_____________56______________41\n |
26 -- 32 |
42 -- 48 |
-16.3055 kcal/mol |
4.68166 kcal/mol |
0.947316 kcal/mol |
17 33@LB@ | |@LB@5'-AUU...GAAAG C CUACA...ACA-3'@LB@ GUCAGGG AGGGAUU@LB@ ||||::| |||:|||@LB@ CAGUUUC UCCUUAA@LB@3'-UUU...CCGGG AGUAA...ACA-5'@LB@ | |@LB@ 56 41@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -16.3055 kcal/mol@LB@Unfolding Energy - mRNA 4.68166 kcal/mol@LB@Unfolding Energy - sRNA 0.947316 kcal/mol@LB@@LB@Position - mRNA 18 -- 32@LB@Position - sRNA 42 -- 55@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 42 -- 48@LB@ |
57 |
0.01201 |
0.6177 |
b2959 |
yggL |
-9.33 |
0.056423 |
82 -- 92 |
47 -- 57 |
DUF469 family protein |
|
_____________81__________93\n_____________|___________|\n5'-GUA...AAAAC___________CAAUG...CAU-3'\n______________CUGUCAGAGAG\n______________|:||||:||||\n______________GGCAGUUUCUC\n3'-UUU...AACCG___________CUUAA...ACA-5'\n_____________|___________|\n_____________58__________46\n |
86 -- 92 |
47 -- 53 |
-15.1623 kcal/mol |
3.10124 kcal/mol |
2.73556 kcal/mol |
81 93@LB@ | |@LB@5'-GUA...AAAAC CAAUG...CAU-3'@LB@ CUGUCAGAGAG@LB@ |:||||:||||@LB@ GGCAGUUUCUC@LB@3'-UUU...AACCG CUUAA...ACA-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -15.1623 kcal/mol@LB@Unfolding Energy - mRNA 3.10124 kcal/mol@LB@Unfolding Energy - sRNA 2.73556 kcal/mol@LB@@LB@Position - mRNA 82 -- 92@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 47 -- 53@LB@ |
58 |
0.01235 |
0.6177 |
b3903 |
rhaA |
-9.27 |
0.057813 |
267 -- 276 |
46 -- 55 |
L-rhamnose isomerase |
|
_____________266________277\n_____________|__________|\n5'-GCC...UUGAU__________CGCUG...UAC-3'\n______________GUCGAGGAGG\n______________|||:|:||||\n______________CAGUUUCUCC\n3'-UUU...CCGGG__________UUAAA...ACA-5'\n_____________|__________|\n_____________56_________45\n |
270 -- 276 |
46 -- 52 |
-15.3197 kcal/mol |
5.12197 kcal/mol |
0.924411 kcal/mol |
266 277@LB@ | |@LB@5'-GCC...UUGAU CGCUG...UAC-3'@LB@ GUCGAGGAGG@LB@ |||:|:||||@LB@ CAGUUUCUCC@LB@3'-UUU...CCGGG UUAAA...ACA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -15.3197 kcal/mol@LB@Unfolding Energy - mRNA 5.12197 kcal/mol@LB@Unfolding Energy - sRNA 0.924411 kcal/mol@LB@@LB@Position - mRNA 267 -- 276@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 46 -- 52@LB@ |
59 |
0.01284 |
0.6177 |
b3453 |
ugpB |
-7.80 |
0.113752 |
247 -- 260 |
43 -- 56 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________246____________261\n_____________|______________|\n5'-UUC...ACUGG______U_______GCACA...UGG-3'\n______________CGUUAA_GGGGAAU\n______________|||:||_|:|||||\n______________GCAGUU_CUCCUUA\n3'-UUU...ACCGG______U_______AAGUA...ACA-5'\n_____________|______________|\n_____________57_____________42\n |
254 -- 260 |
43 -- 49 |
-14.4117 kcal/mol |
5.65325 kcal/mol |
0.953958 kcal/mol |
246 261@LB@ | |@LB@5'-UUC...ACUGG U GCACA...UGG-3'@LB@ CGUUAA GGGGAAU@LB@ |||:|| |:|||||@LB@ GCAGUU CUCCUUA@LB@3'-UUU...ACCGG U AAGUA...ACA-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -14.4117 kcal/mol@LB@Unfolding Energy - mRNA 5.65325 kcal/mol@LB@Unfolding Energy - sRNA 0.953958 kcal/mol@LB@@LB@Position - mRNA 247 -- 260@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 43 -- 49@LB@ |
60 |
0.01286 |
0.6177 |
b4113 |
basR |
-8.68 |
0.076010 |
6 -- 31 |
48 -- 75 |
response regulator in two-component regulatory system with BasS |
|
_____________5____________________________32\n_____________|____________________________|\n______5'-CAGGU_______C____________________AUUAU...CGC-3'\n______________GCCGAUG_UGCUG_UGG_CUGUCGGAGG\n______________|||:||:_:|||:_|||_|:|||::||:\n______________CGGUUAU_GCGAU_ACC_GGCAGUUUCU\n3'-UUU...UUUAC_______A_____A___G__________CCUUA...ACA-5'\n_____________|____________________________|\n_____________76___________________________47\n |
25 -- 31 |
48 -- 54 |
-31.4034 kcal/mol |
11.3837 kcal/mol |
11.3355 kcal/mol |
5 32@LB@ | |@LB@ 5'-CAGGU C AUUAU...CGC-3'@LB@ GCCGAUG UGCUG UGG CUGUCGGAGG@LB@ |||:||: :|||: ||| |:|||::||:@LB@ CGGUUAU GCGAU ACC GGCAGUUUCU@LB@3'-UUU...UUUAC A A G CCUUA...ACA-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -8.68 kcal/mol@LB@Hybridization Energy -31.4034 kcal/mol@LB@Unfolding Energy - mRNA 11.3837 kcal/mol@LB@Unfolding Energy - sRNA 11.3355 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 48 -- 54@LB@ |
61 |
0.01292 |
0.6177 |
b4154 |
frdA |
-9.46 |
0.053105 |
187 -- 202 |
38 -- 54 |
anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
|
_____________186_______________203\n_____________|_________________|\n5'-UAA...AACAA__U_________G____GCAAA...UCG-3'\n______________UC__GGAGGAAU_UCGU\n______________||__:|||||||_||:|\n______________AG__UCUCCUUA_AGUA\n3'-UUU...CGGGC__UU________A____AAAAA...ACA-5'\n_____________|_________________|\n_____________55________________37\n |
191 -- 197 |
43 -- 49 |
-14.1575 kcal/mol |
3.5319 kcal/mol |
1.17036 kcal/mol |
186 203@LB@ | |@LB@5'-UAA...AACAA U G GCAAA...UCG-3'@LB@ UC GGAGGAAU UCGU@LB@ || :||||||| ||:|@LB@ AG UCUCCUUA AGUA@LB@3'-UUU...CGGGC UU A AAAAA...ACA-5'@LB@ | |@LB@ 55 37@LB@@LB@@LB@Energy -9.46 kcal/mol@LB@Hybridization Energy -14.1575 kcal/mol@LB@Unfolding Energy - mRNA 3.5319 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 187 -- 202@LB@Position - sRNA 38 -- 54@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 43 -- 49@LB@ |
62 |
0.01306 |
0.6177 |
b4034 |
malE |
-9.62 |
0.049140 |
112 -- 120 |
45 -- 53 |
maltose transporter subunit |
|
_____________111_______121\n_____________|_________|\n5'-AGG...AGGGG_________UGGAA...UGG-3'\n______________CAAGGAGGA\n______________|||:|||||\n______________GUUUCUCCU\n3'-UUU...GGGCA_________UAAAG...ACA-5'\n_____________|_________|\n_____________54________44\n |
114 -- 120 |
45 -- 51 |
-12.5673 kcal/mol |
2.02865 kcal/mol |
0.917553 kcal/mol |
111 121@LB@ | |@LB@5'-AGG...AGGGG UGGAA...UGG-3'@LB@ CAAGGAGGA@LB@ |||:|||||@LB@ GUUUCUCCU@LB@3'-UUU...GGGCA UAAAG...ACA-5'@LB@ | |@LB@ 54 44@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -12.5673 kcal/mol@LB@Unfolding Energy - mRNA 2.02865 kcal/mol@LB@Unfolding Energy - sRNA 0.917553 kcal/mol@LB@@LB@Position - mRNA 112 -- 120@LB@Position - sRNA 45 -- 53@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 45 -- 51@LB@ |
63 |
0.01324 |
0.6177 |
b3140 |
agaD |
-9.33 |
0.056359 |
182 -- 192 |
45 -- 55 |
N-acetylgalactosamine-specific enzyme IID component of PTS |
|
_____________181_________193\n_____________|___________|\n5'-GCG...AAAAU_AA________CUACA...GUU-3'\n______________G__GAAGAGGA\n______________|__:|||||||\n______________C__UUUCUCCU\n3'-UUU...CCGGG_AG________UAAAG...ACA-5'\n_____________|___________|\n_____________56__________44\n |
186 -- 192 |
45 -- 51 |
-11.186 kcal/mol |
0.927202 kcal/mol |
0.930875 kcal/mol |
181 193@LB@ | |@LB@5'-GCG...AAAAU AA CUACA...GUU-3'@LB@ G GAAGAGGA@LB@ | :|||||||@LB@ C UUUCUCCU@LB@3'-UUU...CCGGG AG UAAAG...ACA-5'@LB@ | |@LB@ 56 44@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -11.186 kcal/mol@LB@Unfolding Energy - mRNA 0.927202 kcal/mol@LB@Unfolding Energy - sRNA 0.930875 kcal/mol@LB@@LB@Position - mRNA 182 -- 192@LB@Position - sRNA 45 -- 55@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 45 -- 51@LB@ |