115 |
0.02287 |
0.6177 |
b3621 |
waaC |
-10.02 |
0.040839 |
179 -- 191 |
44 -- 55 |
ADP-heptose:LPS heptosyl transferase I |
|
_____________178___________192\n_____________|_____________|\n5'-UUG...CUAUU____C________GCCUG...UUG-3'\n______________GUUA_AAGAGGAA\n______________||:|_||||||||\n______________CAGU_UUCUCCUU\n3'-UUU...CCGGG_____________AAAGU...ACA-5'\n_____________|_____________|\n_____________56____________43\n |
185 -- 191 |
44 -- 50 |
-12.6771 kcal/mol |
1.72007 kcal/mol |
0.941432 kcal/mol |
178 192@LB@ | |@LB@5'-UUG...CUAUU C GCCUG...UUG-3'@LB@ GUUA AAGAGGAA@LB@ ||:| ||||||||@LB@ CAGU UUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -12.6771 kcal/mol@LB@Unfolding Energy - mRNA 1.72007 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 179 -- 191@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 44 -- 50@LB@ |
116 |
0.02318 |
0.6177 |
b1726 |
yniB |
-7.96 |
0.105879 |
188 -- 195 |
47 -- 54 |
putative inner membrane protein |
|
_____________187______196\n_____________|________|\n5'-AAG...CUUAA________AACUC...UGA-3'\n______________UCAAGGAG\n______________||||:|||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
189 -- 195 |
47 -- 53 |
-9.99546 kcal/mol |
1.13532 kcal/mol |
0.897871 kcal/mol |
187 196@LB@ | |@LB@5'-AAG...CUUAA AACUC...UGA-3'@LB@ UCAAGGAG@LB@ ||||:|||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -9.99546 kcal/mol@LB@Unfolding Energy - mRNA 1.13532 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 188 -- 195@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 47 -- 53@LB@ |
117 |
0.02321 |
0.6177 |
b1712 |
ihfA |
-8.91 |
0.068436 |
115 -- 126 |
45 -- 56 |
integration host factor (IHF) DNA-binding protein alpha subunit |
|
_____________114__________127\n_____________|____________|\n5'-CGU...ACACU__AA________GAUUG...AGA-3'\n______________CG__GAAGAGGA\n______________||__:|||||||\n______________GC__UUUCUCCU\n3'-UUU...ACCGG__AG________UAAAG...ACA-5'\n_____________|____________|\n_____________57___________44\n |
120 -- 126 |
45 -- 51 |
-12.2887 kcal/mol |
2.43966 kcal/mol |
0.938337 kcal/mol |
114 127@LB@ | |@LB@5'-CGU...ACACU AA GAUUG...AGA-3'@LB@ CG GAAGAGGA@LB@ || :|||||||@LB@ GC UUUCUCCU@LB@3'-UUU...ACCGG AG UAAAG...ACA-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -12.2887 kcal/mol@LB@Unfolding Energy - mRNA 2.43966 kcal/mol@LB@Unfolding Energy - sRNA 0.938337 kcal/mol@LB@@LB@Position - mRNA 115 -- 126@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 45 -- 51@LB@ |
118 |
0.0238 |
0.6177 |
b3321 |
rpsJ |
-9.75 |
0.046314 |
151 -- 177 |
30 -- 55 |
30S ribosomal subunit protein S10 |
|
_____________150___________________________178\n_____________|_____________________________|\n5'-UUC...AAUGG___U_________AA_______CG_____AAAAU...GUG-3'\n______________GUC___GAGGAGU__UCAUUUU__UUUAU\n______________|||___|||||:|__|||||||__|||||\n______________CAG___CUCCUUA__AGUAAAA__AAAUA\n3'-UUU...CCGGG___UUU_______A_______________AUAAU...ACA-5'\n_____________|_____________________________|\n_____________56____________________________29\n |
164 -- 170 |
35 -- 41 |
-16.2369 kcal/mol |
5.30163 kcal/mol |
1.18773 kcal/mol |
150 178@LB@ | |@LB@5'-UUC...AAUGG U AA CG AAAAU...GUG-3'@LB@ GUC GAGGAGU UCAUUUU UUUAU@LB@ ||| |||||:| ||||||| |||||@LB@ CAG CUCCUUA AGUAAAA AAAUA@LB@3'-UUU...CCGGG UUU A AUAAU...ACA-5'@LB@ | |@LB@ 56 29@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -16.2369 kcal/mol@LB@Unfolding Energy - mRNA 5.30163 kcal/mol@LB@Unfolding Energy - sRNA 1.18773 kcal/mol@LB@@LB@Position - mRNA 151 -- 177@LB@Position - sRNA 30 -- 55@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 35 -- 41@LB@ |
119 |
0.02381 |
0.6177 |
b1434 |
ydcN |
-8.41 |
0.086264 |
87 -- 94 |
43 -- 50 |
putative DNA-binding transcriptional regulator |
|
_____________86_______95\n_____________|________|\n5'-CGG...UGGGU________AGAAA...CUA-3'\n______________GGAGGAAU\n______________:|||||||\n______________UCUCCUUA\n3'-UUU...CAGUU________AAGUA...ACA-5'\n_____________|________|\n_____________51_______42\n |
88 -- 94 |
43 -- 49 |
-10.2233 kcal/mol |
0.967994 kcal/mol |
0.845564 kcal/mol |
86 95@LB@ | |@LB@5'-CGG...UGGGU AGAAA...CUA-3'@LB@ GGAGGAAU@LB@ :|||||||@LB@ UCUCCUUA@LB@3'-UUU...CAGUU AAGUA...ACA-5'@LB@ | |@LB@ 51 42@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -10.2233 kcal/mol@LB@Unfolding Energy - mRNA 0.967994 kcal/mol@LB@Unfolding Energy - sRNA 0.845564 kcal/mol@LB@@LB@Position - mRNA 87 -- 94@LB@Position - sRNA 43 -- 50@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 43 -- 49@LB@ |
120 |
0.02398 |
0.6177 |
b0283 |
paoD |
-10.02 |
0.040757 |
188 -- 198 |
44 -- 54 |
moco insertion factor for PaoABC aldehyde oxidoreductase |
|
_____________187_________199\n_____________|___________|\n5'-AGG...GUGGU___________CAAUG...AGG-3'\n______________UUAAGGAGGAA\n______________|:||:||||||\n______________AGUUUCUCCUU\n3'-UUU...CGGGC___________AAAGU...ACA-5'\n_____________|___________|\n_____________55__________43\n |
192 -- 198 |
44 -- 50 |
-12.5456 kcal/mol |
1.58604 kcal/mol |
0.939671 kcal/mol |
187 199@LB@ | |@LB@5'-AGG...GUGGU CAAUG...AGG-3'@LB@ UUAAGGAGGAA@LB@ |:||:||||||@LB@ AGUUUCUCCUU@LB@3'-UUU...CGGGC AAAGU...ACA-5'@LB@ | |@LB@ 55 43@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -12.5456 kcal/mol@LB@Unfolding Energy - mRNA 1.58604 kcal/mol@LB@Unfolding Energy - sRNA 0.939671 kcal/mol@LB@@LB@Position - mRNA 188 -- 198@LB@Position - sRNA 44 -- 54@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 44 -- 50@LB@ |
121 |
0.02422 |
0.6177 |
b0754 |
aroG |
-7.67 |
0.121074 |
238 -- 245 |
47 -- 54 |
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase phenylalanine repressible |
|
_____________237______246\n_____________|________|\n5'-CUU...AGAAA________UUACU...CGA-3'\n______________UCAAAGAG\n______________||||||||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
239 -- 245 |
47 -- 53 |
-9.80538 kcal/mol |
1.24089 kcal/mol |
0.897871 kcal/mol |
237 246@LB@ | |@LB@5'-CUU...AGAAA UUACU...CGA-3'@LB@ UCAAAGAG@LB@ ||||||||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -9.80538 kcal/mol@LB@Unfolding Energy - mRNA 1.24089 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 238 -- 245@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 47 -- 53@LB@ |
122 |
0.02427 |
0.6177 |
b1116 |
lolC |
-7.56 |
0.127136 |
206 -- 233 |
55 -- 74 |
lipoprotein-releasing system transmembrane protein |
|
_____________205__________________________234\n_____________|____________________________|\n5'-GUA...AUGUA____CC_______CUAUUU_________CGUUA...GCA-3'\n______________CCAA__UGUCGCU______AUUGGCCUG\n______________||||__|:|||||______|||||||:|\n______________GGUU__AUAGCGA______UAACCGGGC\n3'-UUU...UUACC____________________________AGUUU...ACA-5'\n_____________|____________________________|\n_____________75___________________________54\n |
212 -- 218 |
64 -- 70 |
-24.394 kcal/mol |
5.52374 kcal/mol |
11.3119 kcal/mol |
205 234@LB@ | |@LB@5'-GUA...AUGUA CC CUAUUU CGUUA...GCA-3'@LB@ CCAA UGUCGCU AUUGGCCUG@LB@ |||| |:||||| |||||||:|@LB@ GGUU AUAGCGA UAACCGGGC@LB@3'-UUU...UUACC AGUUU...ACA-5'@LB@ | |@LB@ 75 54@LB@@LB@@LB@Energy -7.56 kcal/mol@LB@Hybridization Energy -24.394 kcal/mol@LB@Unfolding Energy - mRNA 5.52374 kcal/mol@LB@Unfolding Energy - sRNA 11.3119 kcal/mol@LB@@LB@Position - mRNA 206 -- 233@LB@Position - sRNA 55 -- 74@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 64 -- 70@LB@ |
123 |
0.02427 |
0.6177 |
b4485 |
ytfR |
-5.89 |
0.261942 |
32 -- 42 |
44 -- 54 |
putative sugar ABC transporter ATPase |
|
_____________31__________43\n_____________|___________|\n5'-CCU...AAGAA_______A___GAAAA...GCC-3'\n______________UUAGAGA_GAA\n______________|:|:|||_|||\n______________AGUUUCU_CUU\n3'-UUU...CGGGC_______C___AAAGU...ACA-5'\n_____________|___________|\n_____________55__________43\n |
32 -- 38 |
48 -- 54 |
-7.06152 kcal/mol |
0.22708 kcal/mol |
0.939671 kcal/mol |
31 43@LB@ | |@LB@5'-CCU...AAGAA A GAAAA...GCC-3'@LB@ UUAGAGA GAA@LB@ |:|:||| |||@LB@ AGUUUCU CUU@LB@3'-UUU...CGGGC C AAAGU...ACA-5'@LB@ | |@LB@ 55 43@LB@@LB@@LB@Energy -5.89 kcal/mol@LB@Hybridization Energy -7.06152 kcal/mol@LB@Unfolding Energy - mRNA 0.22708 kcal/mol@LB@Unfolding Energy - sRNA 0.939671 kcal/mol@LB@@LB@Position - mRNA 32 -- 42@LB@Position - sRNA 44 -- 54@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 48 -- 54@LB@ |
124 |
0.02431 |
0.6177 |
b2044 |
wcaL |
-7.42 |
0.135034 |
145 -- 156 |
45 -- 56 |
putative glycosyl transferase |
|
_____________144__________157\n_____________|____________|\n5'-GGG...GUGAG_______C____AUGCA...AGA-3'\n______________CGUCAGA_AGGA\n______________|||||:|_||||\n______________GCAGUUU_UCCU\n3'-UUU...ACCGG_______C____UAAAG...ACA-5'\n_____________|____________|\n_____________57___________44\n |
145 -- 151 |
50 -- 56 |
-12.5799 kcal/mol |
4.21745 kcal/mol |
0.938337 kcal/mol |
144 157@LB@ | |@LB@5'-GGG...GUGAG C AUGCA...AGA-3'@LB@ CGUCAGA AGGA@LB@ |||||:| ||||@LB@ GCAGUUU UCCU@LB@3'-UUU...ACCGG C UAAAG...ACA-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -12.5799 kcal/mol@LB@Unfolding Energy - mRNA 4.21745 kcal/mol@LB@Unfolding Energy - sRNA 0.938337 kcal/mol@LB@@LB@Position - mRNA 145 -- 156@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 50 -- 56@LB@ |