4 |
0.0002658 |
0.2138 |
b1040 |
csgD |
-11.06 |
0.024985 |
185 -- 199 |
38 -- 52 |
csgBAC operon transcriptional regulator |
|
_____________184_____________200\n_____________|_______________|\n5'-UUA...UAAAA____C__________CAUGU...CGC-3'\n______________AAAG_GGGGUUUCAU\n______________||||_||::||||||\n______________UUUC_CCUUAAAGUA\n3'-UUU...GGCAG____U__________AAAAA...ACA-5'\n_____________|_______________|\n_____________53______________37\n |
193 -- 199 |
38 -- 44 |
-14.3947 kcal/mol |
2.26766 kcal/mol |
1.0693 kcal/mol |
184 200@LB@ | |@LB@5'-UUA...UAAAA C CAUGU...CGC-3'@LB@ AAAG GGGGUUUCAU@LB@ |||| ||::||||||@LB@ UUUC CCUUAAAGUA@LB@3'-UUU...GGCAG U AAAAA...ACA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -14.3947 kcal/mol@LB@Unfolding Energy - mRNA 2.26766 kcal/mol@LB@Unfolding Energy - sRNA 1.0693 kcal/mol@LB@@LB@Position - mRNA 185 -- 199@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 38 -- 44@LB@ |
5 |
0.0004437 |
0.2856 |
b0847 |
ybjL |
-12.50 |
0.012601 |
224 -- 253 |
26 -- 55 |
putative transporter |
|
_____________223____________________________254\n_____________|______________________________|\n5'-CUU...GAAUU______U_______A____CUG________UGUGG...GUU-3'\n______________GUUAAA_GGGAAUU_CAUU___UUAUUAUU\n______________||:|||_:||||||_||||___||||||||\n______________CAGUUU_UCCUUAA_GUAA___AAUAAUAA\n3'-UUU...CCGGG______C_______A____AAA________UACGG...ACA-5'\n_____________|______________________________|\n_____________56_____________________________25\n |
247 -- 253 |
26 -- 32 |
-19.6848 kcal/mol |
5.99374 kcal/mol |
1.18815 kcal/mol |
223 254@LB@ | |@LB@5'-CUU...GAAUU U A CUG UGUGG...GUU-3'@LB@ GUUAAA GGGAAUU CAUU UUAUUAUU@LB@ ||:||| :|||||| |||| ||||||||@LB@ CAGUUU UCCUUAA GUAA AAUAAUAA@LB@3'-UUU...CCGGG C A AAA UACGG...ACA-5'@LB@ | |@LB@ 56 25@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -19.6848 kcal/mol@LB@Unfolding Energy - mRNA 5.99374 kcal/mol@LB@Unfolding Energy - sRNA 1.18815 kcal/mol@LB@@LB@Position - mRNA 224 -- 253@LB@Position - sRNA 26 -- 55@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 26 -- 32@LB@ |
6 |
0.0006545 |
0.351 |
b1857 |
znuA |
-11.78 |
0.017745 |
58 -- 67 |
45 -- 54 |
zinc ABC transporter periplasmic binding protein |
|
_____________57_________68\n_____________|__________|\n5'-GCG...ACACA__________CGCGG...AAC-3'\n______________UCAGAGAGGA\n______________|||:||||||\n______________AGUUUCUCCU\n3'-UUU...CGGGC__________UAAAG...ACA-5'\n_____________|__________|\n_____________55_________44\n |
61 -- 67 |
45 -- 51 |
-14.7441 kcal/mol |
2.03423 kcal/mol |
0.929144 kcal/mol |
57 68@LB@ | |@LB@5'-GCG...ACACA CGCGG...AAC-3'@LB@ UCAGAGAGGA@LB@ |||:||||||@LB@ AGUUUCUCCU@LB@3'-UUU...CGGGC UAAAG...ACA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -11.78 kcal/mol@LB@Hybridization Energy -14.7441 kcal/mol@LB@Unfolding Energy - mRNA 2.03423 kcal/mol@LB@Unfolding Energy - sRNA 0.929144 kcal/mol@LB@@LB@Position - mRNA 58 -- 67@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 45 -- 51@LB@ |
7 |
0.001184 |
0.5444 |
b0817 |
mntR |
-11.99 |
0.016054 |
285 -- 294 |
46 -- 55 |
Mn(2+)-responsive manganese regulon transcriptional regulator |
|
_____________284________295\n_____________|__________|\n5'-CUU...GCCAG__________CGCAUC-3'\n______________GUCAGAGAGG\n______________||||:|||||\n______________CAGUUUCUCC\n3'-UUU...CCGGG__________UUAAA...ACA-5'\n_____________|__________|\n_____________56_________45\n |
288 -- 294 |
46 -- 52 |
-16.1275 kcal/mol |
3.21103 kcal/mol |
0.924411 kcal/mol |
284 295@LB@ | |@LB@5'-CUU...GCCAG CGCAUC-3'@LB@ GUCAGAGAGG@LB@ ||||:|||||@LB@ CAGUUUCUCC@LB@3'-UUU...CCGGG UUAAA...ACA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -11.99 kcal/mol@LB@Hybridization Energy -16.1275 kcal/mol@LB@Unfolding Energy - mRNA 3.21103 kcal/mol@LB@Unfolding Energy - sRNA 0.924411 kcal/mol@LB@@LB@Position - mRNA 285 -- 294@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 46 -- 52@LB@ |
8 |
0.001474 |
0.5928 |
b1048 |
opgG |
-11.67 |
0.018726 |
159 -- 168 |
44 -- 53 |
OPG biosynthetic periplasmic beta-1 6 branching glycosyltransferase |
|
_____________158________169\n_____________|__________|\n5'-ACA...GCACA__________AGUGC...AAU-3'\n______________CAAAGGGGGA\n______________|||||:||:|\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
162 -- 168 |
44 -- 50 |
-12.9473 kcal/mol |
0.352192 kcal/mol |
0.927997 kcal/mol |
158 169@LB@ | |@LB@5'-ACA...GCACA AGUGC...AAU-3'@LB@ CAAAGGGGGA@LB@ |||||:||:|@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -12.9473 kcal/mol@LB@Unfolding Energy - mRNA 0.352192 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 159 -- 168@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 44 -- 50@LB@ |
9 |
0.001801 |
0.593 |
b1276 |
acnA |
-10.22 |
0.037037 |
184 -- 198 |
44 -- 55 |
aconitate hydratase 1; aconitase A |
|
_____________183_____________199\n_____________|_______________|\n5'-CUU...ACCCU____UUA________CUAUG...GCG-3'\n______________GUCA___AGGAGGAG\n______________||||___|:|||||:\n______________CAGU___UUCUCCUU\n3'-UUU...CCGGG_______________AAAGU...ACA-5'\n_____________|_______________|\n_____________56______________43\n |
192 -- 198 |
44 -- 50 |
-13.3918 kcal/mol |
2.22696 kcal/mol |
0.941432 kcal/mol |
183 199@LB@ | |@LB@5'-CUU...ACCCU UUA CUAUG...GCG-3'@LB@ GUCA AGGAGGAG@LB@ |||| |:|||||:@LB@ CAGU UUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -13.3918 kcal/mol@LB@Unfolding Energy - mRNA 2.22696 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 184 -- 198@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 44 -- 50@LB@ |
10 |
0.001925 |
0.593 |
b2910 |
zapA |
-12.97 |
0.010115 |
44 -- 65 |
38 -- 56 |
FtsZ stabilizer |
|
_____________43_____________________66\n_____________|______________________|\n5'-GUU...UUCGU______AG________A_____GAUAU...AUC-3'\n______________CGUCAA__GGAGGAAU_UUCAU\n______________||||||__:|||||||_|||||\n______________GCAGUU__UCUCCUUA_AAGUA\n3'-UUU...ACCGG______________________AAAAA...ACA-5'\n_____________|______________________|\n_____________57_____________________37\n |
53 -- 59 |
43 -- 49 |
-19.9082 kcal/mol |
5.76295 kcal/mol |
1.17918 kcal/mol |
43 66@LB@ | |@LB@5'-GUU...UUCGU AG A GAUAU...AUC-3'@LB@ CGUCAA GGAGGAAU UUCAU@LB@ |||||| :||||||| |||||@LB@ GCAGUU UCUCCUUA AAGUA@LB@3'-UUU...ACCGG AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -12.97 kcal/mol@LB@Hybridization Energy -19.9082 kcal/mol@LB@Unfolding Energy - mRNA 5.76295 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 44 -- 65@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 43 -- 49@LB@ |
11 |
0.002274 |
0.593 |
b1476 |
fdnI |
-10.73 |
0.029150 |
152 -- 175 |
44 -- 69 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________151________________________176\n_____________|__________________________|\n5'-CGU...ACUAC____G______________UA_____GUGGA...UUU-3'\n______________AUCG_UAUUGGCCCG__AA__AGGAA\n______________||||_||||||||||__||__|||||\n______________UAGC_AUAACCGGGC__UU__UCCUU\n3'-UUU...GGUUA____G__________AG__UC_____AAAGU...ACA-5'\n_____________|__________________________|\n_____________70_________________________43\n |
160 -- 166 |
55 -- 61 |
-29.2423 kcal/mol |
7.20098 kcal/mol |
11.3099 kcal/mol |
151 176@LB@ | |@LB@5'-CGU...ACUAC G UA GUGGA...UUU-3'@LB@ AUCG UAUUGGCCCG AA AGGAA@LB@ |||| |||||||||| || |||||@LB@ UAGC AUAACCGGGC UU UCCUU@LB@3'-UUU...GGUUA G AG UC AAAGU...ACA-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -10.73 kcal/mol@LB@Hybridization Energy -29.2423 kcal/mol@LB@Unfolding Energy - mRNA 7.20098 kcal/mol@LB@Unfolding Energy - sRNA 11.3099 kcal/mol@LB@@LB@Position - mRNA 152 -- 175@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 55 -- 61@LB@ |
12 |
0.002398 |
0.593 |
b1114 |
mfd |
-13.52 |
0.007793 |
210 -- 241 |
45 -- 73 |
transcription-repair coupling factor |
|
_____________209______________________________242\n_____________|________________________________|\n5'-UUC...CUGAA____________ACGCU___________C___UGAGC...AAA-3'\n______________CAAUAUCGUUAU_____GCCCGUCAAAG_GGG\n______________||||||||:|||_____|||||||||||_||:\n______________GUUAUAGCGAUA_____CGGGCAGUUUC_CCU\n3'-UUU...UACCG____________AC______________U___UAAAG...ACA-5'\n_____________|________________________________|\n_____________74_______________________________44\n |
231 -- 237 |
49 -- 55 |
-37.142 kcal/mol |
12.2919 kcal/mol |
11.3343 kcal/mol |
209 242@LB@ | |@LB@5'-UUC...CUGAA ACGCU C UGAGC...AAA-3'@LB@ CAAUAUCGUUAU GCCCGUCAAAG GGG@LB@ ||||||||:||| ||||||||||| ||:@LB@ GUUAUAGCGAUA CGGGCAGUUUC CCU@LB@3'-UUU...UACCG AC U UAAAG...ACA-5'@LB@ | |@LB@ 74 44@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -37.142 kcal/mol@LB@Unfolding Energy - mRNA 12.2919 kcal/mol@LB@Unfolding Energy - sRNA 11.3343 kcal/mol@LB@@LB@Position - mRNA 210 -- 241@LB@Position - sRNA 45 -- 73@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 49 -- 55@LB@ |
13 |
0.003065 |
0.593 |
b4529 |
ydbJ |
-10.82 |
0.027981 |
161 -- 194 |
44 -- 78 |
DUF333 family putative lipoprotein |
|
_____________160___________________________________195\n_____________|_____________________________________|\n5'-GCA...UAUUU________________________AA__UC_______GAAAA...GUU-3'\n______________AUGG_CGGUGUCGU__UUGGCUUG__GA__AGAGGAA\n______________||||_|::|:|||:__|||||::|__:|__|||||||\n______________UACC_GUUAUAGCG__AACCGGGC__UU__UCUCCUU\n_____3'-UUUUUU____G_________AU________AG___________AAAGU...ACA-5'\n_____________|_____________________________________|\n_____________79____________________________________43\n |
188 -- 194 |
44 -- 50 |
-34.9495 kcal/mol |
10.5981 kcal/mol |
13.5333 kcal/mol |
160 195@LB@ | |@LB@5'-GCA...UAUUU AA UC GAAAA...GUU-3'@LB@ AUGG CGGUGUCGU UUGGCUUG GA AGAGGAA@LB@ |||| |::|:|||: |||||::| :| |||||||@LB@ UACC GUUAUAGCG AACCGGGC UU UCUCCUU@LB@ 3'-UUUUUU G AU AG AAAGU...ACA-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -34.9495 kcal/mol@LB@Unfolding Energy - mRNA 10.5981 kcal/mol@LB@Unfolding Energy - sRNA 13.5333 kcal/mol@LB@@LB@Position - mRNA 161 -- 194@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |