| 1 |
0 |
0 |
b0481 |
ybaK |
-91.37 |
0.000000 |
1 -- 79 |
1 -- 79 |
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________AACUC...UCG-3'\n______________AAUGGCCAAUAUCGCUAUUGGCCCGUCAAAGAGGAAUUUCAUUUUUUUAUUAUUAUGCCGUCACUUUAAGCGACGGUGU\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUACCGGUUAUAGCGAUAACCGGGCAGUUUCUCCUUAAAGUAAAAAAAUAAUAAUACGGCAGUGAAAUUCGCUGCCACA\n______3'-UUUUU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
51 -- 57 |
23 -- 29 |
-143.199 kcal/mol |
26.5504 kcal/mol |
25.2758 kcal/mol |
1 80@LB@ | |@LB@ 5'- AACUC...UCG-3'@LB@ AAUGGCCAAUAUCGCUAUUGGCCCGUCAAAGAGGAAUUUCAUUUUUUUAUUAUUAUGCCGUCACUUUAAGCGACGGUGU@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUACCGGUUAUAGCGAUAACCGGGCAGUUUCUCCUUAAAGUAAAAAAAUAAUAAUACGGCAGUGAAAUUCGCUGCCACA@LB@ 3'-UUUUU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -91.37 kcal/mol@LB@Hybridization Energy -143.199 kcal/mol@LB@Unfolding Energy - mRNA 26.5504 kcal/mol@LB@Unfolding Energy - sRNA 25.2758 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 50 |
0.009706 |
0.6129 |
b0109 |
nadC |
-3.48 |
0.624399 |
8 -- 15 |
22 -- 29 |
quinolinate phosphoribosyltransferase |
|
_____________7________16\n_____________|________|\n____5'-AGGCUAA________ACCAC...AAG-3'\n______________UAUUGUGC\n______________||||:|||\n______________AUAAUACG\n3'-UUU...AAAUA________GCAGU...ACA-5'\n_____________|________|\n_____________30_______21\n |
9 -- 15 |
22 -- 28 |
-7.42611 kcal/mol |
1.02369 kcal/mol |
2.92038 kcal/mol |
7 16@LB@ | |@LB@ 5'-AGGCUAA ACCAC...AAG-3'@LB@ UAUUGUGC@LB@ ||||:|||@LB@ AUAAUACG@LB@3'-UUU...AAAUA GCAGU...ACA-5'@LB@ | |@LB@ 30 21@LB@@LB@@LB@Energy -3.48 kcal/mol@LB@Hybridization Energy -7.42611 kcal/mol@LB@Unfolding Energy - mRNA 1.02369 kcal/mol@LB@Unfolding Energy - sRNA 2.92038 kcal/mol@LB@@LB@Position - mRNA 8 -- 15@LB@Position - sRNA 22 -- 29@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 92 |
0.01873 |
0.6177 |
b2297 |
pta |
-7.94 |
0.106741 |
187 -- 219 |
22 -- 52 |
phosphate acetyltransferase |
|
_____________186_______________________________220\n_____________|_________________________________|\n5'-CGC...UAACG________UAAAC___GUCCCG___________UGAUC...GUC-3'\n______________AAAGAGGA_____CGU______UAUUAUUAUGC\n______________||||||||_____|:|______|||||||||||\n______________UUUCUCCU_____GUA______AUAAUAAUACG\n3'-UUU...GGCAG________UAAA____AAAAA____________GCAGU...ACA-5'\n_____________|_________________________________|\n_____________53________________________________21\n |
213 -- 219 |
22 -- 28 |
-21.7034 kcal/mol |
9.76868 kcal/mol |
3.9903 kcal/mol |
186 220@LB@ | |@LB@5'-CGC...UAACG UAAAC GUCCCG UGAUC...GUC-3'@LB@ AAAGAGGA CGU UAUUAUUAUGC@LB@ |||||||| |:| |||||||||||@LB@ UUUCUCCU GUA AUAAUAAUACG@LB@3'-UUU...GGCAG UAAA AAAAA GCAGU...ACA-5'@LB@ | |@LB@ 53 21@LB@@LB@@LB@Energy -7.94 kcal/mol@LB@Hybridization Energy -21.7034 kcal/mol@LB@Unfolding Energy - mRNA 9.76868 kcal/mol@LB@Unfolding Energy - sRNA 3.9903 kcal/mol@LB@@LB@Position - mRNA 187 -- 219@LB@Position - sRNA 22 -- 52@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 152 |
0.03059 |
0.6177 |
b2609 |
rpsP |
-6.70 |
0.186060 |
187 -- 203 |
23 -- 53 |
30S ribosomal subunit protein S16 |
|
_____________186______________________________204\n_____________|________________________________|\n5'-UCA...AUUCA__C_____________________________GUAAC...UCG-3'\n______________CA_AAGAGGA_______________UGUUAUG\n______________||_|||||||_______________|:|||||\n______________GU_UUCUCCU_______________AUAAUAC\n3'-UUU...GGGCA__________UAAAGUAAAAAAAUA_______GGCAG...ACA-5'\n_____________|________________________________|\n_____________54_______________________________22\n |
197 -- 203 |
23 -- 29 |
-10.7305 kcal/mol |
2.84664 kcal/mol |
1.18482 kcal/mol |
186 204@LB@ | |@LB@5'-UCA...AUUCA C GUAAC...UCG-3'@LB@ CA AAGAGGA UGUUAUG@LB@ || ||||||| |:|||||@LB@ GU UUCUCCU AUAAUAC@LB@3'-UUU...GGGCA UAAAGUAAAAAAAUA GGCAG...ACA-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -6.70 kcal/mol@LB@Hybridization Energy -10.7305 kcal/mol@LB@Unfolding Energy - mRNA 2.84664 kcal/mol@LB@Unfolding Energy - sRNA 1.18482 kcal/mol@LB@@LB@Position - mRNA 187 -- 203@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 33 |
0.006504 |
0.6129 |
b1937 |
fliE |
-6.45 |
0.207626 |
119 -- 135 |
24 -- 40 |
flagellar basal-body component |
|
_____________118_______________136\n_____________|_________________|\n5'-CUG...AAACC_____________C___UUAGC...GUU-3'\n______________CGUUUUUUUGUUG_UAU\n______________|:|||||||:||:_|||\n______________GUAAAAAAAUAAU_AUA\n3'-UUU...UUAAA_____________A___CGGCA...ACA-5'\n_____________|_________________|\n_____________41________________23\n |
124 -- 130 |
29 -- 35 |
-10.2961 kcal/mol |
2.85244 kcal/mol |
0.998368 kcal/mol |
118 136@LB@ | |@LB@5'-CUG...AAACC C UUAGC...GUU-3'@LB@ CGUUUUUUUGUUG UAU@LB@ |:|||||||:||: |||@LB@ GUAAAAAAAUAAU AUA@LB@3'-UUU...UUAAA A CGGCA...ACA-5'@LB@ | |@LB@ 41 23@LB@@LB@@LB@Energy -6.45 kcal/mol@LB@Hybridization Energy -10.2961 kcal/mol@LB@Unfolding Energy - mRNA 2.85244 kcal/mol@LB@Unfolding Energy - sRNA 0.998368 kcal/mol@LB@@LB@Position - mRNA 119 -- 135@LB@Position - sRNA 24 -- 40@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 76 |
0.01599 |
0.6177 |
b1849 |
purT |
-9.18 |
0.060248 |
187 -- 212 |
25 -- 50 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________186________________________213\n_____________|__________________________|\n5'-UUU...UAAUC______UA______AUGAC_______GGCAC...GUC-3'\n______________AGGGGA__UUCGUU_____GUUAUUA\n______________||:|||__|||:||_____:||||||\n______________UCUCCU__AAGUAA_____UAAUAAU\n3'-UUU...CAGUU______UA______AAAAA_______ACGGC...ACA-5'\n_____________|__________________________|\n_____________51_________________________24\n |
206 -- 212 |
25 -- 31 |
-15.1619 kcal/mol |
4.88468 kcal/mol |
1.09239 kcal/mol |
186 213@LB@ | |@LB@5'-UUU...UAAUC UA AUGAC GGCAC...GUC-3'@LB@ AGGGGA UUCGUU GUUAUUA@LB@ ||:||| |||:|| :||||||@LB@ UCUCCU AAGUAA UAAUAAU@LB@3'-UUU...CAGUU UA AAAAA ACGGC...ACA-5'@LB@ | |@LB@ 51 24@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -15.1619 kcal/mol@LB@Unfolding Energy - mRNA 4.88468 kcal/mol@LB@Unfolding Energy - sRNA 1.09239 kcal/mol@LB@@LB@Position - mRNA 187 -- 212@LB@Position - sRNA 25 -- 50@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 5 |
0.0004437 |
0.2856 |
b0847 |
ybjL |
-12.50 |
0.012601 |
224 -- 253 |
26 -- 55 |
putative transporter |
|
_____________223____________________________254\n_____________|______________________________|\n5'-CUU...GAAUU______U_______A____CUG________UGUGG...GUU-3'\n______________GUUAAA_GGGAAUU_CAUU___UUAUUAUU\n______________||:|||_:||||||_||||___||||||||\n______________CAGUUU_UCCUUAA_GUAA___AAUAAUAA\n3'-UUU...CCGGG______C_______A____AAA________UACGG...ACA-5'\n_____________|______________________________|\n_____________56_____________________________25\n |
247 -- 253 |
26 -- 32 |
-19.6848 kcal/mol |
5.99374 kcal/mol |
1.18815 kcal/mol |
223 254@LB@ | |@LB@5'-CUU...GAAUU U A CUG UGUGG...GUU-3'@LB@ GUUAAA GGGAAUU CAUU UUAUUAUU@LB@ ||:||| :|||||| |||| ||||||||@LB@ CAGUUU UCCUUAA GUAA AAUAAUAA@LB@3'-UUU...CCGGG C A AAA UACGG...ACA-5'@LB@ | |@LB@ 56 25@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -19.6848 kcal/mol@LB@Unfolding Energy - mRNA 5.99374 kcal/mol@LB@Unfolding Energy - sRNA 1.18815 kcal/mol@LB@@LB@Position - mRNA 224 -- 253@LB@Position - sRNA 26 -- 55@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 185 |
0.03847 |
0.6177 |
b0621 |
dcuC |
-6.69 |
0.186516 |
155 -- 171 |
26 -- 48 |
anaerobic C4-dicarboxylate transport |
|
_____________154_____________________172\n_____________|_______________________|\n5'-UGC...GCUUU_______________________UACUU...UCG-3'\n______________AGGAAUUUU______UUAUUAUU\n______________||||||||:______||||||||\n______________UCCUUAAAG______AAUAAUAA\n3'-UUU...GUUUC_________UAAAAA________UACGG...ACA-5'\n_____________|_______________________|\n_____________49______________________25\n |
165 -- 171 |
26 -- 32 |
-10.8714 kcal/mol |
3.1068 kcal/mol |
1.07117 kcal/mol |
154 172@LB@ | |@LB@5'-UGC...GCUUU UACUU...UCG-3'@LB@ AGGAAUUUU UUAUUAUU@LB@ ||||||||: ||||||||@LB@ UCCUUAAAG AAUAAUAA@LB@3'-UUU...GUUUC UAAAAA UACGG...ACA-5'@LB@ | |@LB@ 49 25@LB@@LB@@LB@Energy -6.69 kcal/mol@LB@Hybridization Energy -10.8714 kcal/mol@LB@Unfolding Energy - mRNA 3.1068 kcal/mol@LB@Unfolding Energy - sRNA 1.07117 kcal/mol@LB@@LB@Position - mRNA 155 -- 171@LB@Position - sRNA 26 -- 48@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 17 |
0.003407 |
0.593 |
b3607 |
cysE |
-9.56 |
0.050591 |
4 -- 44 |
27 -- 56 |
serine acetyltransferase |
|
_____________3__________________________________________45\n_____________|__________________________________________|\n________5'-CGG_______AUGCCAAUAACC______A_____CAAG_______AUUGC...CGA-3'\n______________CGUUGAA____________GAGGAA_UUUAU_____UAUUAU\n______________|||::||____________||||||_||:||_____||||||\n______________GCAGUUU____________CUCCUU_AAGUA_____AUAAUA\n3'-UUU...ACCGG_________________________A_____AAAAA______AUACG...ACA-5'\n_____________|__________________________________________|\n_____________57_________________________________________26\n |
4 -- 10 |
50 -- 56 |
-14.2001 kcal/mol |
3.44433 kcal/mol |
1.19682 kcal/mol |
3 45@LB@ | |@LB@ 5'-CGG AUGCCAAUAACC A CAAG AUUGC...CGA-3'@LB@ CGUUGAA GAGGAA UUUAU UAUUAU@LB@ |||::|| |||||| ||:|| ||||||@LB@ GCAGUUU CUCCUU AAGUA AUAAUA@LB@3'-UUU...ACCGG A AAAAA AUACG...ACA-5'@LB@ | |@LB@ 57 26@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -14.2001 kcal/mol@LB@Unfolding Energy - mRNA 3.44433 kcal/mol@LB@Unfolding Energy - sRNA 1.19682 kcal/mol@LB@@LB@Position - mRNA 4 -- 44@LB@Position - sRNA 27 -- 56@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 135 |
0.02628 |
0.6177 |
b3547 |
yhjX |
-9.70 |
0.047334 |
158 -- 184 |
28 -- 55 |
pyruvate-inducible inner membrane protein putative transporter |
|
_____________157___________________________185\n_____________|_____________________________|\n5'-UAA...UGGUU_____C____AUU____C___________CUGCA...UUA-3'\n______________GUCGG_AGAG___UUUC___UUUUUAUUA\n______________|||::_||||___||||___|||||||||\n______________CAGUU_UCUC___AAAG___AAAAAUAAU\n3'-UUU...CCGGG__________CUU____UAA_________AAUAC...ACA-5'\n_____________|_____________________________|\n_____________56____________________________27\n |
178 -- 184 |
28 -- 34 |
-15.2509 kcal/mol |
4.36169 kcal/mol |
1.18814 kcal/mol |
157 185@LB@ | |@LB@5'-UAA...UGGUU C AUU C CUGCA...UUA-3'@LB@ GUCGG AGAG UUUC UUUUUAUUA@LB@ |||:: |||| |||| |||||||||@LB@ CAGUU UCUC AAAG AAAAAUAAU@LB@3'-UUU...CCGGG CUU UAA AAUAC...ACA-5'@LB@ | |@LB@ 56 27@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -15.2509 kcal/mol@LB@Unfolding Energy - mRNA 4.36169 kcal/mol@LB@Unfolding Energy - sRNA 1.18814 kcal/mol@LB@@LB@Position - mRNA 158 -- 184@LB@Position - sRNA 28 -- 55@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 28 -- 34@LB@ |
