| 1 |
0 |
0 |
b0481 |
ybaK |
-91.37 |
0.000000 |
1 -- 79 |
1 -- 79 |
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase |
|
______________1______________________________________________________________________________80\n______________|______________________________________________________________________________|\n___________5'-_______________________________________________________________________________AACUC...UCG-3'\n______________AAUGGCCAAUAUCGCUAUUGGCCCGUCAAAGAGGAAUUUCAUUUUUUUAUUAUUAUGCCGUCACUUUAAGCGACGGUGU\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUACCGGUUAUAGCGAUAACCGGGCAGUUUCUCCUUAAAGUAAAAAAAUAAUAAUACGGCAGUGAAAUUCGCUGCCACA\n______3'-UUUUU_______________________________________________________________________________-5'\n_____________|______________________________________________________________________________|\n_____________80_____________________________________________________________________________1\n |
51 -- 57 |
23 -- 29 |
-143.199 kcal/mol |
26.5504 kcal/mol |
25.2758 kcal/mol |
1 80@LB@ | |@LB@ 5'- AACUC...UCG-3'@LB@ AAUGGCCAAUAUCGCUAUUGGCCCGUCAAAGAGGAAUUUCAUUUUUUUAUUAUUAUGCCGUCACUUUAAGCGACGGUGU@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUACCGGUUAUAGCGAUAACCGGGCAGUUUCUCCUUAAAGUAAAAAAAUAAUAAUACGGCAGUGAAAUUCGCUGCCACA@LB@ 3'-UUUUU -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -91.37 kcal/mol@LB@Hybridization Energy -143.199 kcal/mol@LB@Unfolding Energy - mRNA 26.5504 kcal/mol@LB@Unfolding Energy - sRNA 25.2758 kcal/mol@LB@@LB@Position - mRNA 1 -- 79@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 199 |
0.0417 |
0.6177 |
b4070 |
nrfA |
-7.95 |
0.106497 |
2 -- 16 |
44 -- 55 |
nitrite reductase formate-dependent cytochrome |
|
_____________1_______________17\n_____________|_______________|\n__________5'-U___GAA_________GAUAC...CAA-3'\n______________GUU___AAAGAGGAA\n______________||:___|||||||||\n______________CAG___UUUCUCCUU\n3'-UUU...CCGGG_______________AAAGU...ACA-5'\n_____________|_______________|\n_____________56______________43\n |
10 -- 16 |
44 -- 50 |
-11.2989 kcal/mol |
2.40804 kcal/mol |
0.941432 kcal/mol |
1 17@LB@ | |@LB@ 5'-U GAA GAUAC...CAA-3'@LB@ GUU AAAGAGGAA@LB@ ||: |||||||||@LB@ CAG UUUCUCCUU@LB@3'-UUU...CCGGG AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -11.2989 kcal/mol@LB@Unfolding Energy - mRNA 2.40804 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 2 -- 16@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 17 |
0.003407 |
0.593 |
b3607 |
cysE |
-9.56 |
0.050591 |
4 -- 44 |
27 -- 56 |
serine acetyltransferase |
|
_____________3__________________________________________45\n_____________|__________________________________________|\n________5'-CGG_______AUGCCAAUAACC______A_____CAAG_______AUUGC...CGA-3'\n______________CGUUGAA____________GAGGAA_UUUAU_____UAUUAU\n______________|||::||____________||||||_||:||_____||||||\n______________GCAGUUU____________CUCCUU_AAGUA_____AUAAUA\n3'-UUU...ACCGG_________________________A_____AAAAA______AUACG...ACA-5'\n_____________|__________________________________________|\n_____________57_________________________________________26\n |
4 -- 10 |
50 -- 56 |
-14.2001 kcal/mol |
3.44433 kcal/mol |
1.19682 kcal/mol |
3 45@LB@ | |@LB@ 5'-CGG AUGCCAAUAACC A CAAG AUUGC...CGA-3'@LB@ CGUUGAA GAGGAA UUUAU UAUUAU@LB@ |||::|| |||||| ||:|| ||||||@LB@ GCAGUUU CUCCUU AAGUA AUAAUA@LB@3'-UUU...ACCGG A AAAAA AUACG...ACA-5'@LB@ | |@LB@ 57 26@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -14.2001 kcal/mol@LB@Unfolding Energy - mRNA 3.44433 kcal/mol@LB@Unfolding Energy - sRNA 1.19682 kcal/mol@LB@@LB@Position - mRNA 4 -- 44@LB@Position - sRNA 27 -- 56@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 60 |
0.01286 |
0.6177 |
b4113 |
basR |
-8.68 |
0.076010 |
6 -- 31 |
48 -- 75 |
response regulator in two-component regulatory system with BasS |
|
_____________5____________________________32\n_____________|____________________________|\n______5'-CAGGU_______C____________________AUUAU...CGC-3'\n______________GCCGAUG_UGCUG_UGG_CUGUCGGAGG\n______________|||:||:_:|||:_|||_|:|||::||:\n______________CGGUUAU_GCGAU_ACC_GGCAGUUUCU\n3'-UUU...UUUAC_______A_____A___G__________CCUUA...ACA-5'\n_____________|____________________________|\n_____________76___________________________47\n |
25 -- 31 |
48 -- 54 |
-31.4034 kcal/mol |
11.3837 kcal/mol |
11.3355 kcal/mol |
5 32@LB@ | |@LB@ 5'-CAGGU C AUUAU...CGC-3'@LB@ GCCGAUG UGCUG UGG CUGUCGGAGG@LB@ |||:||: :|||: ||| |:|||::||:@LB@ CGGUUAU GCGAU ACC GGCAGUUUCU@LB@3'-UUU...UUUAC A A G CCUUA...ACA-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -8.68 kcal/mol@LB@Hybridization Energy -31.4034 kcal/mol@LB@Unfolding Energy - mRNA 11.3837 kcal/mol@LB@Unfolding Energy - sRNA 11.3355 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 50 |
0.009706 |
0.6129 |
b0109 |
nadC |
-3.48 |
0.624399 |
8 -- 15 |
22 -- 29 |
quinolinate phosphoribosyltransferase |
|
_____________7________16\n_____________|________|\n____5'-AGGCUAA________ACCAC...AAG-3'\n______________UAUUGUGC\n______________||||:|||\n______________AUAAUACG\n3'-UUU...AAAUA________GCAGU...ACA-5'\n_____________|________|\n_____________30_______21\n |
9 -- 15 |
22 -- 28 |
-7.42611 kcal/mol |
1.02369 kcal/mol |
2.92038 kcal/mol |
7 16@LB@ | |@LB@ 5'-AGGCUAA ACCAC...AAG-3'@LB@ UAUUGUGC@LB@ ||||:|||@LB@ AUAAUACG@LB@3'-UUU...AAAUA GCAGU...ACA-5'@LB@ | |@LB@ 30 21@LB@@LB@@LB@Energy -3.48 kcal/mol@LB@Hybridization Energy -7.42611 kcal/mol@LB@Unfolding Energy - mRNA 1.02369 kcal/mol@LB@Unfolding Energy - sRNA 2.92038 kcal/mol@LB@@LB@Position - mRNA 8 -- 15@LB@Position - sRNA 22 -- 29@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 99 |
0.01953 |
0.6177 |
b2473 |
ypfH |
-12.09 |
0.015349 |
8 -- 40 |
44 -- 76 |
palmitoyl-CoA esterase activity uncertain physiological substrate |
|
_____________7__________________________________41\n_____________|__________________________________|\n____5'-ACUUUCA_____CAAGA_____C___________C______GAGGC...GGG-3'\n______________GGCCG_____UGUUA_UGGUCCGUCAG_G_GGAA\n______________||||:_____:|:||_|||:||||||:_|_||||\n______________CCGGU_____GCGAU_ACCGGGCAGUU_C_CCUU\n___3'-UUUUUUUA_____UAUA______A___________U_U____AAAGU...ACA-5'\n_____________|__________________________________|\n_____________77_________________________________43\n |
28 -- 34 |
51 -- 57 |
-34.8713 kcal/mol |
9.35151 kcal/mol |
13.433 kcal/mol |
7 41@LB@ | |@LB@ 5'-ACUUUCA CAAGA C C GAGGC...GGG-3'@LB@ GGCCG UGUUA UGGUCCGUCAG G GGAA@LB@ ||||: :|:|| |||:||||||: | ||||@LB@ CCGGU GCGAU ACCGGGCAGUU C CCUU@LB@ 3'-UUUUUUUA UAUA A U U AAAGU...ACA-5'@LB@ | |@LB@ 77 43@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -34.8713 kcal/mol@LB@Unfolding Energy - mRNA 9.35151 kcal/mol@LB@Unfolding Energy - sRNA 13.433 kcal/mol@LB@@LB@Position - mRNA 8 -- 40@LB@Position - sRNA 44 -- 76@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 200 |
0.04173 |
0.6177 |
b3155 |
yhbQ |
-7.74 |
0.117248 |
9 -- 16 |
50 -- 57 |
GIY-YIG nuclease superfamily protein |
|
_____________8________17\n_____________|________|\n___5'-UUUUUCUU________AUGUA...GCG-3'\n______________CCGUCAAA\n______________||||||||\n______________GGCAGUUU\n3'-UUU...AACCG________CUCCU...ACA-5'\n_____________|________|\n_____________58_______49\n |
10 -- 16 |
50 -- 56 |
-10.5697 kcal/mol |
0.110673 kcal/mol |
2.72137 kcal/mol |
8 17@LB@ | |@LB@ 5'-UUUUUCUU AUGUA...GCG-3'@LB@ CCGUCAAA@LB@ ||||||||@LB@ GGCAGUUU@LB@3'-UUU...AACCG CUCCU...ACA-5'@LB@ | |@LB@ 58 49@LB@@LB@@LB@Energy -7.74 kcal/mol@LB@Hybridization Energy -10.5697 kcal/mol@LB@Unfolding Energy - mRNA 0.110673 kcal/mol@LB@Unfolding Energy - sRNA 2.72137 kcal/mol@LB@@LB@Position - mRNA 9 -- 16@LB@Position - sRNA 50 -- 57@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 87 |
0.01794 |
0.6177 |
b3499 |
rlmJ |
-10.99 |
0.025859 |
12 -- 21 |
46 -- 55 |
23S rRNA m(6)A2030 methyltransferase SAM-dependent |
|
_____________11_________22\n_____________|__________|\n5'-GCG...UCCUG__________UUAAG...AUA-3'\n______________GUUAAAGAGG\n______________||:|||||||\n______________CAGUUUCUCC\n3'-UUU...CCGGG__________UUAAA...ACA-5'\n_____________|__________|\n_____________56_________45\n |
15 -- 21 |
46 -- 52 |
-14.3615 kcal/mol |
2.45195 kcal/mol |
0.924411 kcal/mol |
11 22@LB@ | |@LB@5'-GCG...UCCUG UUAAG...AUA-3'@LB@ GUUAAAGAGG@LB@ ||:|||||||@LB@ CAGUUUCUCC@LB@3'-UUU...CCGGG UUAAA...ACA-5'@LB@ | |@LB@ 56 45@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -14.3615 kcal/mol@LB@Unfolding Energy - mRNA 2.45195 kcal/mol@LB@Unfolding Energy - sRNA 0.924411 kcal/mol@LB@@LB@Position - mRNA 12 -- 21@LB@Position - sRNA 46 -- 55@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 52 |
0.01005 |
0.6177 |
b3985 |
rplJ |
-10.76 |
0.028819 |
17 -- 26 |
48 -- 57 |
50S ribosomal subunit protein L10 |
|
_____________16_________27\n_____________|__________|\n5'-UGG...GGCCU__________CCGCA...UAA-3'\n______________CCGUCGAAGA\n______________|||||:||||\n______________GGCAGUUUCU\n3'-UUU...AACCG__________CCUUA...ACA-5'\n_____________|__________|\n_____________58_________47\n |
20 -- 26 |
48 -- 54 |
-14.4896 kcal/mol |
0.999171 kcal/mol |
2.73483 kcal/mol |
16 27@LB@ | |@LB@5'-UGG...GGCCU CCGCA...UAA-3'@LB@ CCGUCGAAGA@LB@ |||||:||||@LB@ GGCAGUUUCU@LB@3'-UUU...AACCG CCUUA...ACA-5'@LB@ | |@LB@ 58 47@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -14.4896 kcal/mol@LB@Unfolding Energy - mRNA 0.999171 kcal/mol@LB@Unfolding Energy - sRNA 2.73483 kcal/mol@LB@@LB@Position - mRNA 17 -- 26@LB@Position - sRNA 48 -- 57@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 56 |
0.01199 |
0.6177 |
b0836 |
bssR |
-10.68 |
0.029916 |
18 -- 32 |
42 -- 55 |
repressor of biofilm formation by indole transport regulation |
|
_____________17______________33\n_____________|_______________|\n5'-AUU...GAAAG_______C_______CUACA...ACA-3'\n______________GUCAGGG_AGGGAUU\n______________||||::|_|||:|||\n______________CAGUUUC_UCCUUAA\n3'-UUU...CCGGG_______________AGUAA...ACA-5'\n_____________|_______________|\n_____________56______________41\n |
26 -- 32 |
42 -- 48 |
-16.3055 kcal/mol |
4.68166 kcal/mol |
0.947316 kcal/mol |
17 33@LB@ | |@LB@5'-AUU...GAAAG C CUACA...ACA-3'@LB@ GUCAGGG AGGGAUU@LB@ ||||::| |||:|||@LB@ CAGUUUC UCCUUAA@LB@3'-UUU...CCGGG AGUAA...ACA-5'@LB@ | |@LB@ 56 41@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -16.3055 kcal/mol@LB@Unfolding Energy - mRNA 4.68166 kcal/mol@LB@Unfolding Energy - sRNA 0.947316 kcal/mol@LB@@LB@Position - mRNA 18 -- 32@LB@Position - sRNA 42 -- 55@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 42 -- 48@LB@ |
