24 |
0.004602 |
0.5992 |
b0526 |
cysS |
-10.20 |
0.037463 |
234 -- 245 |
41 -- 52 |
cysteinyl-tRNA synthetase |
|
_____________233__________246\n_____________|____________|\n5'-GCC...GCCAA____________AAGCC...ACG-3'\n______________AAAGAGGAAUUU\n______________||||||||||||\n______________UUUCUCCUUAAA\n3'-UUU...GGCAG____________GUAAA...ACA-5'\n_____________|____________|\n_____________53___________40\n |
239 -- 245 |
41 -- 47 |
-14.6017 kcal/mol |
3.53507 kcal/mol |
0.867487 kcal/mol |
233 246@LB@ | |@LB@5'-GCC...GCCAA AAGCC...ACG-3'@LB@ AAAGAGGAAUUU@LB@ ||||||||||||@LB@ UUUCUCCUUAAA@LB@3'-UUU...GGCAG GUAAA...ACA-5'@LB@ | |@LB@ 53 40@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -14.6017 kcal/mol@LB@Unfolding Energy - mRNA 3.53507 kcal/mol@LB@Unfolding Energy - sRNA 0.867487 kcal/mol@LB@@LB@Position - mRNA 234 -- 245@LB@Position - sRNA 41 -- 52@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 41 -- 47@LB@ |
25 |
0.004737 |
0.5992 |
b1093 |
fabG |
-11.25 |
0.022809 |
188 -- 202 |
38 -- 52 |
3-oxoacyl-[acyl-carrier-protein] reductase |
|
_____________187_____________203\n_____________|_______________|\n5'-UAC...CUUUA_________AA____GAAUU...UUG-3'\n______________AAAGAGGAA__UCAU\n______________|||||||||__||||\n______________UUUCUCCUU__AGUA\n3'-UUU...GGCAG_________AA____AAAAA...ACA-5'\n_____________|_______________|\n_____________53______________37\n |
190 -- 196 |
44 -- 50 |
-14.2885 kcal/mol |
1.96871 kcal/mol |
1.0693 kcal/mol |
187 203@LB@ | |@LB@5'-UAC...CUUUA AA GAAUU...UUG-3'@LB@ AAAGAGGAA UCAU@LB@ ||||||||| ||||@LB@ UUUCUCCUU AGUA@LB@3'-UUU...GGCAG AA AAAAA...ACA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -14.2885 kcal/mol@LB@Unfolding Energy - mRNA 1.96871 kcal/mol@LB@Unfolding Energy - sRNA 1.0693 kcal/mol@LB@@LB@Position - mRNA 188 -- 202@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 44 -- 50@LB@ |
26 |
0.004859 |
0.5992 |
b1753 |
ynjA |
-8.90 |
0.068656 |
186 -- 195 |
43 -- 52 |
carboxymuconolactone decarboxylase family protein |
|
_____________185________196\n_____________|__________|\n5'-ACU...CGCCA__________GCCUG...GGU-3'\n______________GAAGAGGAAU\n______________:|||||||||\n______________UUUCUCCUUA\n3'-UUU...GGCAG__________AAGUA...ACA-5'\n_____________|__________|\n_____________53_________42\n |
189 -- 195 |
43 -- 49 |
-11.6028 kcal/mol |
1.83308 kcal/mol |
0.865937 kcal/mol |
185 196@LB@ | |@LB@5'-ACU...CGCCA GCCUG...GGU-3'@LB@ GAAGAGGAAU@LB@ :|||||||||@LB@ UUUCUCCUUA@LB@3'-UUU...GGCAG AAGUA...ACA-5'@LB@ | |@LB@ 53 42@LB@@LB@@LB@Energy -8.90 kcal/mol@LB@Hybridization Energy -11.6028 kcal/mol@LB@Unfolding Energy - mRNA 1.83308 kcal/mol@LB@Unfolding Energy - sRNA 0.865937 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 43 -- 52@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 43 -- 49@LB@ |
27 |
0.005027 |
0.5992 |
b3745 |
viaA |
-10.46 |
0.033099 |
243 -- 253 |
42 -- 52 |
stimulator of RavA ATPase activity; von Willebrand factor domain protein |
|
_____________242_________254\n_____________|___________|\n5'-ACG...UCAGC___________GAUCG...CGG-3'\n______________GAAGAGGGAUU\n______________:||||||:|||\n______________UUUCUCCUUAA\n3'-UUU...GGCAG___________AGUAA...ACA-5'\n_____________|___________|\n_____________53__________41\n |
247 -- 253 |
42 -- 48 |
-12.7293 kcal/mol |
1.40033 kcal/mol |
0.866923 kcal/mol |
242 254@LB@ | |@LB@5'-ACG...UCAGC GAUCG...CGG-3'@LB@ GAAGAGGGAUU@LB@ :||||||:|||@LB@ UUUCUCCUUAA@LB@3'-UUU...GGCAG AGUAA...ACA-5'@LB@ | |@LB@ 53 41@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -12.7293 kcal/mol@LB@Unfolding Energy - mRNA 1.40033 kcal/mol@LB@Unfolding Energy - sRNA 0.866923 kcal/mol@LB@@LB@Position - mRNA 243 -- 253@LB@Position - sRNA 42 -- 52@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 42 -- 48@LB@ |
28 |
0.005242 |
0.6024 |
b0785 |
moaE |
-11.01 |
0.025514 |
211 -- 232 |
52 -- 74 |
molybdopterin synthase large subunit |
|
_____________210_____________________233\n_____________|_______________________|\n5'-AGA...AGAAA____A__________________GCCGU...CCU-3'\n______________CCAA_AUUGUUGUUGGUCCG_CA\n______________||||_||:|:|:||||:|||_||\n______________GGUU_UAGCGAUAACCGGGC_GU\n3'-UUU...UUACC____A_______________A__UUCUC...ACA-5'\n_____________|_______________________|\n_____________75______________________51\n |
216 -- 222 |
63 -- 69 |
-28.4518 kcal/mol |
6.10798 kcal/mol |
11.3304 kcal/mol |
210 233@LB@ | |@LB@5'-AGA...AGAAA A GCCGU...CCU-3'@LB@ CCAA AUUGUUGUUGGUCCG CA@LB@ |||| ||:|:|:||||:||| ||@LB@ GGUU UAGCGAUAACCGGGC GU@LB@3'-UUU...UUACC A A UUCUC...ACA-5'@LB@ | |@LB@ 75 51@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -28.4518 kcal/mol@LB@Unfolding Energy - mRNA 6.10798 kcal/mol@LB@Unfolding Energy - sRNA 11.3304 kcal/mol@LB@@LB@Position - mRNA 211 -- 232@LB@Position - sRNA 52 -- 74@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 63 -- 69@LB@ |
29 |
0.005664 |
0.6127 |
b3831 |
udp |
-8.88 |
0.069383 |
184 -- 196 |
42 -- 54 |
uridine phosphorylase |
|
_____________183___________197\n_____________|_____________|\n5'-AUC...CCGAU___C_________GUAUA...AGA-3'\n______________UCA_AGAGGAGUU\n______________|||_||||||:||\n______________AGU_UCUCCUUAA\n3'-UUU...CGGGC___U_________AGUAA...ACA-5'\n_____________|_____________|\n_____________55____________41\n |
190 -- 196 |
42 -- 48 |
-14.4874 kcal/mol |
4.66075 kcal/mol |
0.945538 kcal/mol |
183 197@LB@ | |@LB@5'-AUC...CCGAU C GUAUA...AGA-3'@LB@ UCA AGAGGAGUU@LB@ ||| ||||||:||@LB@ AGU UCUCCUUAA@LB@3'-UUU...CGGGC U AGUAA...ACA-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -14.4874 kcal/mol@LB@Unfolding Energy - mRNA 4.66075 kcal/mol@LB@Unfolding Energy - sRNA 0.945538 kcal/mol@LB@@LB@Position - mRNA 184 -- 196@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 42 -- 48@LB@ |
30 |
0.005789 |
0.6127 |
b2688 |
gshA |
-11.51 |
0.020183 |
254 -- 264 |
45 -- 55 |
glutamate-cysteine ligase |
|
_____________253_________265\n_____________|___________|\n5'-UGU...CAGGC___________UACAG...UUA-3'\n______________GUUAAAGGGGA\n______________||:||||:|||\n______________CAGUUUCUCCU\n3'-UUU...CCGGG___________UAAAG...ACA-5'\n_____________|___________|\n_____________56__________44\n |
258 -- 264 |
45 -- 51 |
-13.8935 kcal/mol |
1.45381 kcal/mol |
0.930875 kcal/mol |
253 265@LB@ | |@LB@5'-UGU...CAGGC UACAG...UUA-3'@LB@ GUUAAAGGGGA@LB@ ||:||||:|||@LB@ CAGUUUCUCCU@LB@3'-UUU...CCGGG UAAAG...ACA-5'@LB@ | |@LB@ 56 44@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -13.8935 kcal/mol@LB@Unfolding Energy - mRNA 1.45381 kcal/mol@LB@Unfolding Energy - sRNA 0.930875 kcal/mol@LB@@LB@Position - mRNA 254 -- 264@LB@Position - sRNA 45 -- 55@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 45 -- 51@LB@ |
31 |
0.005902 |
0.6127 |
b1951 |
rcsA |
-8.09 |
0.100100 |
163 -- 178 |
37 -- 51 |
transcriptional regulator of colanic acid capsular biosynthesis |
|
_____________162______________179\n_____________|________________|\n5'-GUU...CAGGU__________A_____ACGCA...UUG-3'\n______________AAGGGGAAUU_UCGUU\n______________|||:||||||_||:||\n______________UUCUCCUUAA_AGUAA\n3'-UUU...GCAGU________________AAAAA...ACA-5'\n_____________|________________|\n_____________52_______________36\n |
166 -- 172 |
42 -- 48 |
-14.3412 kcal/mol |
5.18535 kcal/mol |
1.07049 kcal/mol |
162 179@LB@ | |@LB@5'-GUU...CAGGU A ACGCA...UUG-3'@LB@ AAGGGGAAUU UCGUU@LB@ |||:|||||| ||:||@LB@ UUCUCCUUAA AGUAA@LB@3'-UUU...GCAGU AAAAA...ACA-5'@LB@ | |@LB@ 52 36@LB@@LB@@LB@Energy -8.09 kcal/mol@LB@Hybridization Energy -14.3412 kcal/mol@LB@Unfolding Energy - mRNA 5.18535 kcal/mol@LB@Unfolding Energy - sRNA 1.07049 kcal/mol@LB@@LB@Position - mRNA 163 -- 178@LB@Position - sRNA 37 -- 51@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 42 -- 48@LB@ |
32 |
0.006131 |
0.6129 |
b2585 |
pssA |
-9.74 |
0.046374 |
32 -- 41 |
45 -- 54 |
phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase |
|
_____________31_________42\n_____________|__________|\n5'-CGC...CCAGC__________GAUCG...CCG-3'\n______________UCGAAGAGGG\n______________||:||||||:\n______________AGUUUCUCCU\n3'-UUU...CGGGC__________UAAAG...ACA-5'\n_____________|__________|\n_____________55_________44\n |
35 -- 41 |
45 -- 51 |
-13.2862 kcal/mol |
2.61225 kcal/mol |
0.929144 kcal/mol |
31 42@LB@ | |@LB@5'-CGC...CCAGC GAUCG...CCG-3'@LB@ UCGAAGAGGG@LB@ ||:||||||:@LB@ AGUUUCUCCU@LB@3'-UUU...CGGGC UAAAG...ACA-5'@LB@ | |@LB@ 55 44@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -13.2862 kcal/mol@LB@Unfolding Energy - mRNA 2.61225 kcal/mol@LB@Unfolding Energy - sRNA 0.929144 kcal/mol@LB@@LB@Position - mRNA 32 -- 41@LB@Position - sRNA 45 -- 54@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 45 -- 51@LB@ |
33 |
0.006504 |
0.6129 |
b1937 |
fliE |
-6.45 |
0.207626 |
119 -- 135 |
24 -- 40 |
flagellar basal-body component |
|
_____________118_______________136\n_____________|_________________|\n5'-CUG...AAACC_____________C___UUAGC...GUU-3'\n______________CGUUUUUUUGUUG_UAU\n______________|:|||||||:||:_|||\n______________GUAAAAAAAUAAU_AUA\n3'-UUU...UUAAA_____________A___CGGCA...ACA-5'\n_____________|_________________|\n_____________41________________23\n |
124 -- 130 |
29 -- 35 |
-10.2961 kcal/mol |
2.85244 kcal/mol |
0.998368 kcal/mol |
118 136@LB@ | |@LB@5'-CUG...AAACC C UUAGC...GUU-3'@LB@ CGUUUUUUUGUUG UAU@LB@ |:|||||||:||: |||@LB@ GUAAAAAAAUAAU AUA@LB@3'-UUU...UUAAA A CGGCA...ACA-5'@LB@ | |@LB@ 41 23@LB@@LB@@LB@Energy -6.45 kcal/mol@LB@Hybridization Energy -10.2961 kcal/mol@LB@Unfolding Energy - mRNA 2.85244 kcal/mol@LB@Unfolding Energy - sRNA 0.998368 kcal/mol@LB@@LB@Position - mRNA 119 -- 135@LB@Position - sRNA 24 -- 40@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 29 -- 35@LB@ |