186 |
0.01872 |
0.3269 |
bsu09880 |
yhaR |
-10.74 |
0.166509 |
137 -- 152 |
16 -- 29 |
enoyl-CoA hydratase/isomerase YhaR |
|
_____________136______________153\n_____________|________________|\n5'-CAG...UUUAU_______UG_______AUGUA...AAU-3'\n______________UUGGGGA__GCGGGGA\n______________|||||||__:|:|:||\n______________AACCCCU__UGUCUCU\n3'-UUU...UCCCC________________CAUCG...AUA-5'\n_____________|________________|\n_____________30_______________15\n |
146 -- 152 |
16 -- 22 |
-19.1675 kcal/mol |
2.41685 kcal/mol |
6.01276 kcal/mol |
136 153@LB@ | |@LB@5'-CAG...UUUAU UG AUGUA...AAU-3'@LB@ UUGGGGA GCGGGGA@LB@ ||||||| :|:|:||@LB@ AACCCCU UGUCUCU@LB@3'-UUU...UCCCC CAUCG...AUA-5'@LB@ | |@LB@ 30 15@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -19.1675 kcal/mol@LB@Unfolding Energy - mRNA 2.41685 kcal/mol@LB@Unfolding Energy - sRNA 6.01276 kcal/mol@LB@@LB@Position - mRNA 137 -- 152@LB@Position - sRNA 16 -- 29@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 16 -- 22@LB@ |
135 |
0.01203 |
0.2883 |
bsu09920 |
yhaN |
-10.31 |
0.192319 |
8 -- 29 |
28 -- 47 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 16267290; Product type pe : enzyme' |
|
_____________7______________________30\n_____________|______________________|\n____5'-AACAAAC_______CUUUUUUU__C____UAUUU...ACG-3'\n______________CUUGAUC________GG_GGUU\n______________|||||||________||_||||\n______________GAACUAG________CC_CCAA\n3'-UUU...GCCUA_______ACUAUCU________CCCCU...AUA-5'\n_____________|______________________|\n_____________48_____________________27\n |
8 -- 14 |
41 -- 47 |
-14.5368 kcal/mol |
3.24797 kcal/mol |
0.974663 kcal/mol |
7 30@LB@ | |@LB@ 5'-AACAAAC CUUUUUUU C UAUUU...ACG-3'@LB@ CUUGAUC GG GGUU@LB@ ||||||| || ||||@LB@ GAACUAG CC CCAA@LB@3'-UUU...GCCUA ACUAUCU CCCCU...AUA-5'@LB@ | |@LB@ 48 27@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -14.5368 kcal/mol@LB@Unfolding Energy - mRNA 3.24797 kcal/mol@LB@Unfolding Energy - sRNA 0.974663 kcal/mol@LB@@LB@Position - mRNA 8 -- 29@LB@Position - sRNA 28 -- 47@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 41 -- 47@LB@ |
158 |
0.01436 |
0.3008 |
bsu10130 |
hemH |
-12.69 |
0.080628 |
178 -- 227 |
6 -- 44 |
ferrochelatase |
|
_____________177____________________________________________________228\n_____________|______________________________________________________|\n5'-GAG...UAUCA____AUUAA______U__A_________U____AGAAAGAAAAUGG________GUGAU...GAA-3'\n______________GAUC_____AGAGGG_GU_____AACAG_GAGU_____________GGCUUCUC\n______________||||_____||||||_||_____|||||_||||_____________:|||||||\n______________CUAG_____UCUCCC_CA_____UUGUC_CUCA_____________UCGAAGAG\n3'-UUU...UAGAA____ACUA__________ACCCC_____U_________________________AGAUA-5'\n_____________|______________________________________________________|\n_____________45_____________________________________________________5\n |
220 -- 226 |
7 -- 13 |
-32.766 kcal/mol |
10.122 kcal/mol |
9.95356 kcal/mol |
177 228@LB@ | |@LB@5'-GAG...UAUCA AUUAA U A U AGAAAGAAAAUGG GUGAU...GAA-3'@LB@ GAUC AGAGGG GU AACAG GAGU GGCUUCUC@LB@ |||| |||||| || ||||| |||| :|||||||@LB@ CUAG UCUCCC CA UUGUC CUCA UCGAAGAG@LB@3'-UUU...UAGAA ACUA ACCCC U AGAUA-5'@LB@ | |@LB@ 45 5@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -32.766 kcal/mol@LB@Unfolding Energy - mRNA 10.122 kcal/mol@LB@Unfolding Energy - sRNA 9.95356 kcal/mol@LB@@LB@Position - mRNA 178 -- 227@LB@Position - sRNA 6 -- 44@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 7 -- 13@LB@ |
187 |
0.01872 |
0.3269 |
bsu10530 |
ntdC |
-12.62 |
0.082941 |
177 -- 192 |
32 -- 53 |
NTD biosynthesis operon putative oxidoreductase NtdC |
|
_____________176____________________193\n_____________|______________________|\n5'-CCU...AUUAA_______A______________AAAUA...ACA-3'\n______________UUGGAUC_UGA______GGAGG\n______________|:|||||_|||______:||||\n______________AGCCUAG_ACU______UCUCC\n3'-UUU...AAAAA_______A___AGACUA_____CCAAC...AUA-5'\n_____________|______________________|\n_____________54_____________________31\n |
177 -- 183 |
47 -- 53 |
-16.8717 kcal/mol |
3.27102 kcal/mol |
0.981755 kcal/mol |
176 193@LB@ | |@LB@5'-CCU...AUUAA A AAAUA...ACA-3'@LB@ UUGGAUC UGA GGAGG@LB@ |:||||| ||| :||||@LB@ AGCCUAG ACU UCUCC@LB@3'-UUU...AAAAA A AGACUA CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -16.8717 kcal/mol@LB@Unfolding Energy - mRNA 3.27102 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 177 -- 192@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 47 -- 53@LB@ |
47 |
0.002107 |
0.1496 |
bsu10620 |
addB |
-16.79 |
0.012734 |
176 -- 222 |
12 -- 44 |
ATP-dependent helicase/deoxyribonuclease subunit B |
|
_____________175_____________________________________________223\n_____________|_______________________________________________|\n5'-UAG...AGAGA___AAAAAG________CUUCUAAUUU__________UUUUU_____GCAGG...AGC-3'\n______________GAU______AGAGGGGU__________GGGAGCAGAG_____AGUAG\n______________|||______||||||||__________||||:|||||_____|||||\n______________CUA______UCUCCCCA__________CCCUUGUCUC_____UCAUC\n3'-UUU...UAGAA___GACUA_________AC____________________________GAAGA...AUA-5'\n_____________|_______________________________________________|\n_____________45______________________________________________11\n |
206 -- 212 |
17 -- 23 |
-35.2405 kcal/mol |
8.50165 kcal/mol |
9.94637 kcal/mol |
175 223@LB@ | |@LB@5'-UAG...AGAGA AAAAAG CUUCUAAUUU UUUUU GCAGG...AGC-3'@LB@ GAU AGAGGGGU GGGAGCAGAG AGUAG@LB@ ||| |||||||| ||||:||||| |||||@LB@ CUA UCUCCCCA CCCUUGUCUC UCAUC@LB@3'-UUU...UAGAA GACUA AC GAAGA...AUA-5'@LB@ | |@LB@ 45 11@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -35.2405 kcal/mol@LB@Unfolding Energy - mRNA 8.50165 kcal/mol@LB@Unfolding Energy - sRNA 9.94637 kcal/mol@LB@@LB@Position - mRNA 176 -- 222@LB@Position - sRNA 12 -- 44@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 17 -- 23@LB@ |
188 |
0.01873 |
0.3269 |
bsu10750 |
yisK |
-12.58 |
0.084103 |
165 -- 222 |
21 -- 51 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pe: enzyme' |
|
_____________164_________________________________________________________223\n_____________|___________________________________________________________|\n5'-UCC...AUGAA___GCAU________UAAAAGA_________AAUAACAUGAAAUUU_C_ACA_______UUUAC...UGU-3'\n______________GGA____UC_UGAUU_______UGAUGGAGG_______________G_G___GGGGAAC\n______________|||____||_||||:_______||||:||||_______________|_|___|||||||\n______________CCU____AG_ACUAG_______ACUAUCUCC_______________C_C___CCCCUUG\n3'-UUU...AAAAG_________A_______________________________________AA________UCUCU...AUA-5'\n_____________|___________________________________________________________|\n_____________52__________________________________________________________20\n |
216 -- 222 |
21 -- 27 |
-23.7404 kcal/mol |
8.38838 kcal/mol |
2.76846 kcal/mol |
164 223@LB@ | |@LB@5'-UCC...AUGAA GCAU UAAAAGA AAUAACAUGAAAUUU C ACA UUUAC...UGU-3'@LB@ GGA UC UGAUU UGAUGGAGG G G GGGGAAC@LB@ ||| || ||||: ||||:|||| | | |||||||@LB@ CCU AG ACUAG ACUAUCUCC C C CCCCUUG@LB@3'-UUU...AAAAG A AA UCUCU...AUA-5'@LB@ | |@LB@ 52 20@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -23.7404 kcal/mol@LB@Unfolding Energy - mRNA 8.38838 kcal/mol@LB@Unfolding Energy - sRNA 2.76846 kcal/mol@LB@@LB@Position - mRNA 165 -- 222@LB@Position - sRNA 21 -- 51@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 21 -- 27@LB@ |
2 |
2.736e-07 |
0.0004564 |
bsu10760 |
yisL |
-18.52 |
0.005045 |
172 -- 193 |
31 -- 51 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________171____________________194\n_____________|______________________|\n5'-UAC...AAGUG____AAUUU_____________AACAU...UCA-3'\n______________GGGU_____AUCUGAUAGGGGG\n______________||:|_____|||||||||:|||\n______________CCUA_____UAGACUAUCUCCC\n3'-UUU...AAAAG____GAAC______________CAACC...AUA-5'\n_____________|______________________|\n_____________52_____________________30\n |
187 -- 193 |
31 -- 37 |
-25.2722 kcal/mol |
5.77834 kcal/mol |
0.970589 kcal/mol |
171 194@LB@ | |@LB@5'-UAC...AAGUG AAUUU AACAU...UCA-3'@LB@ GGGU AUCUGAUAGGGGG@LB@ ||:| |||||||||:|||@LB@ CCUA UAGACUAUCUCCC@LB@3'-UUU...AAAAG GAAC CAACC...AUA-5'@LB@ | |@LB@ 52 30@LB@@LB@@LB@Energy -18.52 kcal/mol@LB@Hybridization Energy -25.2722 kcal/mol@LB@Unfolding Energy - mRNA 5.77834 kcal/mol@LB@Unfolding Energy - sRNA 0.970589 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 31 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 31 -- 37@LB@ |
62 |
0.003827 |
0.2059 |
bsu11360 |
appD |
-16.60 |
0.014008 |
157 -- 196 |
21 -- 48 |
oligopeptide transport ATP-binding protein AppD |
|
_____________156______________________________________197\n_____________|________________________________________|\n5'-AUG...CUUUC______AAACG_____CAACA_______GGAAA_______UAGCA...AAG-3'\n______________UCUUGA_____UUUGA_____AGAGGGG_____GGGGAGC\n______________||||||_____|:|||_____|||||||_____|||||:|\n______________AGAACU_____AGACU_____UCUCCCC_____CCCCUUG\n3'-UUU...AGCCU________________A___________AA__________UCUCU...AUA-5'\n_____________|________________________________________|\n_____________49_______________________________________20\n |
190 -- 196 |
21 -- 27 |
-30.7931 kcal/mol |
11.4214 kcal/mol |
2.76831 kcal/mol |
156 197@LB@ | |@LB@5'-AUG...CUUUC AAACG CAACA GGAAA UAGCA...AAG-3'@LB@ UCUUGA UUUGA AGAGGGG GGGGAGC@LB@ |||||| |:||| ||||||| |||||:|@LB@ AGAACU AGACU UCUCCCC CCCCUUG@LB@3'-UUU...AGCCU A AA UCUCU...AUA-5'@LB@ | |@LB@ 49 20@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -30.7931 kcal/mol@LB@Unfolding Energy - mRNA 11.4214 kcal/mol@LB@Unfolding Energy - sRNA 2.76831 kcal/mol@LB@@LB@Position - mRNA 157 -- 196@LB@Position - sRNA 21 -- 48@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 21 -- 27@LB@ |
12 |
0.0001633 |
0.0454 |
bsu11410 |
yjbA |
-19.25 |
0.003321 |
222 -- 243 |
30 -- 52 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type pf: factor' |
|
_____________221_______________________244\n_____________|_________________________|\n5'-GAA...AUGUG______AA_________________AAGAA...UUG-3'\n______________UGGGUC__UUGGUUUGA___AGGGG\n______________:||:||__|||:|:|||___|||||\n______________GCCUAG__AACUAGACU___UCCCC\n3'-UUU...AAAAA_________________AUC_____AACCC...AUA-5'\n_____________|_________________________|\n_____________53________________________29\n |
232 -- 238 |
38 -- 44 |
-23.9108 kcal/mol |
3.6845 kcal/mol |
0.979974 kcal/mol |
221 244@LB@ | |@LB@5'-GAA...AUGUG AA AAGAA...UUG-3'@LB@ UGGGUC UUGGUUUGA AGGGG@LB@ :||:|| |||:|:||| |||||@LB@ GCCUAG AACUAGACU UCCCC@LB@3'-UUU...AAAAA AUC AACCC...AUA-5'@LB@ | |@LB@ 53 29@LB@@LB@@LB@Energy -19.25 kcal/mol@LB@Hybridization Energy -23.9108 kcal/mol@LB@Unfolding Energy - mRNA 3.6845 kcal/mol@LB@Unfolding Energy - sRNA 0.979974 kcal/mol@LB@@LB@Position - mRNA 222 -- 243@LB@Position - sRNA 30 -- 52@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 38 -- 44@LB@ |
119 |
0.01041 |
0.2883 |
bsu11480 |
yjbB |
-12.30 |
0.094041 |
10 -- 19 |
22 -- 31 |
MFS transporter |
bsu07460 |
_____________9__________20\n_____________|__________|\n5'-UCA...UUAAA__A_______ACGAU...GGA-3'\n______________GG_UGGGGAA\n______________||_|||||||\n______________CC_ACCCCUU\n3'-UUU...UCUCC__A_______GUCUC...AUA-5'\n_____________|__________|\n_____________32_________21\n |
13 -- 19 |
22 -- 28 |
-13.9571 kcal/mol |
0.741777 kcal/mol |
0.918006 kcal/mol |
9 20@LB@ | |@LB@5'-UCA...UUAAA A ACGAU...GGA-3'@LB@ GG UGGGGAA@LB@ || |||||||@LB@ CC ACCCCUU@LB@3'-UUU...UCUCC A GUCUC...AUA-5'@LB@ | |@LB@ 32 21@LB@@LB@@LB@Energy -12.30 kcal/mol@LB@Hybridization Energy -13.9571 kcal/mol@LB@Unfolding Energy - mRNA 0.741777 kcal/mol@LB@Unfolding Energy - sRNA 0.918006 kcal/mol@LB@@LB@Position - mRNA 10 -- 19@LB@Position - sRNA 22 -- 31@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 22 -- 28@LB@ |