| 51 |
0.002362 |
0.1545 |
bsu28450 |
sdhC |
-14.17 |
0.043697 |
178 -- 219 |
14 -- 47 |
succinate dehydrogenase cytochrome b558 subunit |
|
_____________177_________________________________________220\n_____________|___________________________________________|\n5'-AAA...UCGCA_______AAAC______UAAAGUAAU__CU_____________UUUAU...AGU-3'\n______________CUU_AUC____AGGGGG_________GU__GGGAACAGAGAGU\n______________|||_|||____||:|||_________||__|||||||||||||\n______________GAA_UAG____UCUCCC_________CA__CCCUUGUCUCUCA\n3'-UUU...GCCUA___C___ACUA_________________AC_____________UCGAA...AUA-5'\n_____________|___________________________________________|\n_____________48__________________________________________13\n |
213 -- 219 |
14 -- 20 |
-33.4599 kcal/mol |
9.41028 kcal/mol |
9.88362 kcal/mol |
177 220@LB@ | |@LB@5'-AAA...UCGCA AAAC UAAAGUAAU CU UUUAU...AGU-3'@LB@ CUU AUC AGGGGG GU GGGAACAGAGAGU@LB@ ||| ||| ||:||| || |||||||||||||@LB@ GAA UAG UCUCCC CA CCCUUGUCUCUCA@LB@3'-UUU...GCCUA C ACUA AC UCGAA...AUA-5'@LB@ | |@LB@ 48 13@LB@@LB@@LB@Energy -14.17 kcal/mol@LB@Hybridization Energy -33.4599 kcal/mol@LB@Unfolding Energy - mRNA 9.41028 kcal/mol@LB@Unfolding Energy - sRNA 9.88362 kcal/mol@LB@@LB@Position - mRNA 178 -- 219@LB@Position - sRNA 14 -- 47@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 121 |
0.01072 |
0.2883 |
bsu28520 |
etfA |
-20.27 |
0.001775 |
7 -- 28 |
32 -- 50 |
electron transfer flavoprotein subunit alpha |
|
_____________6______________________29\n_____________|______________________|\n_____5'-CUUGAU_____________ACGA_____AUGCU...AUG-3'\n______________GAUCUUGAUCUGG____AGAGG\n______________||||||||||||:____|||||\n______________CUAGAACUAGACU____UCUCC\n3'-UUU...AAAGC_____________A________CCAAC...AUA-5'\n_____________|______________________|\n_____________51_____________________31\n |
13 -- 19 |
38 -- 44 |
-25.4493 kcal/mol |
4.21131 kcal/mol |
0.970199 kcal/mol |
6 29@LB@ | |@LB@ 5'-CUUGAU ACGA AUGCU...AUG-3'@LB@ GAUCUUGAUCUGG AGAGG@LB@ ||||||||||||: |||||@LB@ CUAGAACUAGACU UCUCC@LB@3'-UUU...AAAGC A CCAAC...AUA-5'@LB@ | |@LB@ 51 31@LB@@LB@@LB@Energy -20.27 kcal/mol@LB@Hybridization Energy -25.4493 kcal/mol@LB@Unfolding Energy - mRNA 4.21131 kcal/mol@LB@Unfolding Energy - sRNA 0.970199 kcal/mol@LB@@LB@Position - mRNA 7 -- 28@LB@Position - sRNA 32 -- 50@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 162 |
0.01461 |
0.3008 |
bsu28700 |
ysfE |
-18.20 |
0.006050 |
31 -- 59 |
26 -- 51 |
Evidence 5: No homology to any previously reported sequences |
bsu26940 |
_____________30____________________________60\n_____________|_____________________________|\n5'-AAG...UAGAA___CUA____AAA__CUG___________CAAUG...AAA-3'\n______________GGA___UUGA___UG___AGAGGGGUUGG\n______________|||___||||___||___|||||||||||\n______________CCU___AACU___AC___UCUCCCCAACC\n3'-UUU...AAAAG___AG_____AG___UA____________CCUUG...AUA-5'\n_____________|_____________________________|\n_____________52____________________________25\n |
53 -- 59 |
26 -- 32 |
-27.3955 kcal/mol |
8.22133 kcal/mol |
0.975822 kcal/mol |
30 60@LB@ | |@LB@5'-AAG...UAGAA CUA AAA CUG CAAUG...AAA-3'@LB@ GGA UUGA UG AGAGGGGUUGG@LB@ ||| |||| || |||||||||||@LB@ CCU AACU AC UCUCCCCAACC@LB@3'-UUU...AAAAG AG AG UA CCUUG...AUA-5'@LB@ | |@LB@ 52 25@LB@@LB@@LB@Energy -18.20 kcal/mol@LB@Hybridization Energy -27.3955 kcal/mol@LB@Unfolding Energy - mRNA 8.22133 kcal/mol@LB@Unfolding Energy - sRNA 0.975822 kcal/mol@LB@@LB@Position - mRNA 31 -- 59@LB@Position - sRNA 26 -- 51@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 85 |
0.006705 |
0.2588 |
bsu28790 |
araB |
-13.91 |
0.048694 |
184 -- 192 |
30 -- 38 |
ribulokinase |
|
_____________183_______193\n_____________|_________|\n5'-GGA...CAAAA_________GAUGU...AAU-3'\n______________GUAGAGGGG\n______________:||||||||\n______________UAUCUCCCC\n3'-UUU...UAGAC_________AACCC...AUA-5'\n_____________|_________|\n_____________39________29\n |
186 -- 192 |
30 -- 36 |
-16.4519 kcal/mol |
1.87822 kcal/mol |
0.6591 kcal/mol |
183 193@LB@ | |@LB@5'-GGA...CAAAA GAUGU...AAU-3'@LB@ GUAGAGGGG@LB@ :||||||||@LB@ UAUCUCCCC@LB@3'-UUU...UAGAC AACCC...AUA-5'@LB@ | |@LB@ 39 29@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -16.4519 kcal/mol@LB@Unfolding Energy - mRNA 1.87822 kcal/mol@LB@Unfolding Energy - sRNA 0.6591 kcal/mol@LB@@LB@Position - mRNA 184 -- 192@LB@Position - sRNA 30 -- 38@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 173 |
0.01667 |
0.3152 |
bsu28970 |
ytxB |
-13.17 |
0.066474 |
182 -- 201 |
13 -- 34 |
tvp38/tmem64 family membrane protein YtxB |
|
_____________181____________________202\n_____________|______________________|\n5'-UGC...UUCAA_____AA_______U_______UGAAA...AAA-3'\n______________AGGGG____GGAAC_GAGGGUA\n______________|||||____|||||_|||:|||\n______________UCCCC____CCUUG_CUCUCAU\n3'-UUU...CUAUC_____AACC_____U_______CGAAG...AUA-5'\n_____________|______________________|\n_____________35_____________________12\n |
195 -- 201 |
13 -- 19 |
-25.067 kcal/mol |
2.85387 kcal/mol |
9.04315 kcal/mol |
181 202@LB@ | |@LB@5'-UGC...UUCAA AA U UGAAA...AAA-3'@LB@ AGGGG GGAAC GAGGGUA@LB@ ||||| ||||| |||:|||@LB@ UCCCC CCUUG CUCUCAU@LB@3'-UUU...CUAUC AACC U CGAAG...AUA-5'@LB@ | |@LB@ 35 12@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -25.067 kcal/mol@LB@Unfolding Energy - mRNA 2.85387 kcal/mol@LB@Unfolding Energy - sRNA 9.04315 kcal/mol@LB@@LB@Position - mRNA 182 -- 201@LB@Position - sRNA 13 -- 34@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 87 |
0.00681 |
0.2588 |
bsu29140 |
citZ |
-14.51 |
0.037644 |
213 -- 231 |
27 -- 52 |
citrate synthase 2 |
|
_____________212_________________________232\n_____________|___________________________|\n5'-GAG...CGACA__C________________________UAGCA...AUG-3'\n______________CG_GGUCUUGA________AGGGGUUG\n______________||_|:||||||________||||||||\n______________GC_CUAGAACU________UCCCCAAC\n3'-UUU...AAAAA___________AGACUAUC________CCCUU...AUA-5'\n_____________|___________________________|\n_____________53__________________________26\n |
225 -- 231 |
27 -- 33 |
-23.9033 kcal/mol |
8.41647 kcal/mol |
0.980744 kcal/mol |
212 232@LB@ | |@LB@5'-GAG...CGACA C UAGCA...AUG-3'@LB@ CG GGUCUUGA AGGGGUUG@LB@ || |:|||||| ||||||||@LB@ GC CUAGAACU UCCCCAAC@LB@3'-UUU...AAAAA AGACUAUC CCCUU...AUA-5'@LB@ | |@LB@ 53 26@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -23.9033 kcal/mol@LB@Unfolding Energy - mRNA 8.41647 kcal/mol@LB@Unfolding Energy - sRNA 0.980744 kcal/mol@LB@@LB@Position - mRNA 213 -- 231@LB@Position - sRNA 27 -- 52@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 172 |
0.01654 |
0.3152 |
bsu29680 |
acsA |
-11.36 |
0.133506 |
267 -- 288 |
32 -- 52 |
acetyl-CoA synthetase |
|
_____________266____________________289\n_____________|______________________|\n5'-UUU...CGUAC___C_________G__CC____CAGAG...AUU-3'\n______________CGG_AUUUUGAUU_GG__GAGG\n______________|||_||:|||||:_|:__||||\n______________GCC_UAGAACUAG_CU__CUCC\n3'-UUU...AAAAA_____________A__AU____CCAAC...AUA-5'\n_____________|______________________|\n_____________53_____________________31\n |
273 -- 279 |
41 -- 47 |
-18.8322 kcal/mol |
6.49419 kcal/mol |
0.976384 kcal/mol |
266 289@LB@ | |@LB@5'-UUU...CGUAC C G CC CAGAG...AUU-3'@LB@ CGG AUUUUGAUU GG GAGG@LB@ ||| ||:|||||: |: ||||@LB@ GCC UAGAACUAG CU CUCC@LB@3'-UUU...AAAAA A AU CCAAC...AUA-5'@LB@ | |@LB@ 53 31@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -18.8322 kcal/mol@LB@Unfolding Energy - mRNA 6.49419 kcal/mol@LB@Unfolding Energy - sRNA 0.976384 kcal/mol@LB@@LB@Position - mRNA 267 -- 288@LB@Position - sRNA 32 -- 52@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 128 |
0.01143 |
0.2883 |
bsu29690 |
acuA |
-15.81 |
0.020690 |
248 -- 269 |
30 -- 52 |
acetoin utilization protein AcuA |
|
_____________247_____________________270\n_____________|_______________________|\n5'-UAU...GCAAC___C____UA_________A___CCUGU...AUG-3'\n______________CGG_UCUU___CUGAUAGA_GGG\n______________|||_||||___||||||||_|||\n______________GCC_AGAA___GACUAUCU_CCC\n3'-UUU...AAAAA___U____CUA________C___AACCC...AUA-5'\n_____________|_______________________|\n_____________53______________________29\n |
259 -- 265 |
34 -- 40 |
-22.8929 kcal/mol |
6.10629 kcal/mol |
0.979974 kcal/mol |
247 270@LB@ | |@LB@5'-UAU...GCAAC C UA A CCUGU...AUG-3'@LB@ CGG UCUU CUGAUAGA GGG@LB@ ||| |||| |||||||| |||@LB@ GCC AGAA GACUAUCU CCC@LB@3'-UUU...AAAAA U CUA C AACCC...AUA-5'@LB@ | |@LB@ 53 29@LB@@LB@@LB@Energy -15.81 kcal/mol@LB@Hybridization Energy -22.8929 kcal/mol@LB@Unfolding Energy - mRNA 6.10629 kcal/mol@LB@Unfolding Energy - sRNA 0.979974 kcal/mol@LB@@LB@Position - mRNA 248 -- 269@LB@Position - sRNA 30 -- 52@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 19 |
0.0003652 |
0.06216 |
bsu29920 |
ytmP |
-16.30 |
0.016289 |
3 -- 31 |
25 -- 51 |
phosphotransferase YtmP |
|
_____________2_____________________________32\n_____________|_____________________________|\n_________5'-AU_____GAACA______U__ACU_______ACAAU...GUA-3'\n______________GGGUU_____UUGAUA_GA___GGUUGGG\n______________||:|:_____:|||||_||___|||||||\n______________CCUAG_____GACUAU_CU___CCAACCC\n3'-UUU...AAAAG_____AACUA_________CC________CUUGU...AUA-5'\n_____________|_____________________________|\n_____________52____________________________24\n |
25 -- 31 |
25 -- 31 |
-23.4751 kcal/mol |
6.19942 kcal/mol |
0.976067 kcal/mol |
2 32@LB@ | |@LB@ 5'-AU GAACA U ACU ACAAU...GUA-3'@LB@ GGGUU UUGAUA GA GGUUGGG@LB@ ||:|: :||||| || |||||||@LB@ CCUAG GACUAU CU CCAACCC@LB@3'-UUU...AAAAG AACUA CC CUUGU...AUA-5'@LB@ | |@LB@ 52 24@LB@@LB@@LB@Energy -16.30 kcal/mol@LB@Hybridization Energy -23.4751 kcal/mol@LB@Unfolding Energy - mRNA 6.19942 kcal/mol@LB@Unfolding Energy - sRNA 0.976067 kcal/mol@LB@@LB@Position - mRNA 3 -- 31@LB@Position - sRNA 25 -- 51@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 160 |
0.01451 |
0.3008 |
bsu30080 |
yteV |
-11.71 |
0.117611 |
279 -- 298 |
34 -- 53 |
sporulation protein cse60 |
|
_____________278__________________299\n_____________|____________________|\n5'-UUU...GGAUA_____GGAGCAG________UA-3'\n______________UCGGA_______CUGAUAGA\n______________|||||_______||||||||\n______________AGCCU_______GACUAUCU\n3'-UUU...AAAAA_____AGAACUA________CCCCA...AUA-5'\n_____________|____________________|\n_____________54___________________33\n |
292 -- 298 |
34 -- 40 |
-18.1644 kcal/mol |
5.47565 kcal/mol |
0.98171 kcal/mol |
278 299@LB@ | |@LB@5'-UUU...GGAUA GGAGCAG UA-3'@LB@ UCGGA CUGAUAGA@LB@ ||||| ||||||||@LB@ AGCCU GACUAUCU@LB@3'-UUU...AAAAA AGAACUA CCCCA...AUA-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -18.1644 kcal/mol@LB@Unfolding Energy - mRNA 5.47565 kcal/mol@LB@Unfolding Energy - sRNA 0.98171 kcal/mol@LB@@LB@Position - mRNA 279 -- 298@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 34 -- 40@LB@ |
