181 |
0.0171 |
0.3152 |
bsu32040 |
yuiF |
-15.17 |
0.027943 |
179 -- 194 |
29 -- 51 |
amino acid transporter YuiF |
|
_____________178_____________________195\n_____________|_______________________|\n5'-ACA...CUAAA_______________________AUCAU...GGU-3'\n______________GGAUUUU_______UGGAGGGGU\n______________||||:||_______|:|||||||\n______________CCUAGAA_______AUCUCCCCA\n3'-UUU...AAAAG_______CUAGACU_________ACCCC...AUA-5'\n_____________|_______________________|\n_____________52______________________28\n |
188 -- 194 |
29 -- 35 |
-21.3957 kcal/mol |
5.25498 kcal/mol |
0.974539 kcal/mol |
178 195@LB@ | |@LB@5'-ACA...CUAAA AUCAU...GGU-3'@LB@ GGAUUUU UGGAGGGGU@LB@ ||||:|| |:|||||||@LB@ CCUAGAA AUCUCCCCA@LB@3'-UUU...AAAAG CUAGACU ACCCC...AUA-5'@LB@ | |@LB@ 52 28@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -21.3957 kcal/mol@LB@Unfolding Energy - mRNA 5.25498 kcal/mol@LB@Unfolding Energy - sRNA 0.974539 kcal/mol@LB@@LB@Position - mRNA 179 -- 194@LB@Position - sRNA 29 -- 51@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 29 -- 35@LB@ |
101 |
0.008451 |
0.2778 |
bsu32150 |
paiA |
-11.07 |
0.148459 |
77 -- 92 |
23 -- 39 |
protease synthase and sporulation negative regulatory protein PAI 1 |
|
_____________76________________93\n_____________|_________________|\n5'-AUU...AUCAC_______A______U__UGAAG...CAC-3'\n______________GAUAGGG__GUUGG_GA\n______________|||||:|__|||||_||\n______________CUAUCUC__CAACC_CU\n3'-UUU...CUAGA_______CC_____C__UGUCU...AUA-5'\n_____________|_________________|\n_____________40________________22\n |
77 -- 83 |
33 -- 39 |
-14.8457 kcal/mol |
2.98855 kcal/mol |
0.791731 kcal/mol |
76 93@LB@ | |@LB@5'-AUU...AUCAC A U UGAAG...CAC-3'@LB@ GAUAGGG GUUGG GA@LB@ |||||:| ||||| ||@LB@ CUAUCUC CAACC CU@LB@3'-UUU...CUAGA CC C UGUCU...AUA-5'@LB@ | |@LB@ 40 22@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -14.8457 kcal/mol@LB@Unfolding Energy - mRNA 2.98855 kcal/mol@LB@Unfolding Energy - sRNA 0.791731 kcal/mol@LB@@LB@Position - mRNA 77 -- 92@LB@Position - sRNA 23 -- 39@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 33 -- 39@LB@ |
4 |
1.471e-05 |
0.01227 |
bsu32200 |
yutJ |
-17.92 |
0.007061 |
210 -- 239 |
21 -- 53 |
NADH dehydrogenase-like protein YutJ |
|
_____________209_______________________________240\n_____________|_________________________________|\n5'-UGA...AAAAA________________C_____UUAC_______AUGCG...UAA-3'\n______________UUGG_UCUUGAUC_GG_GGAGG_____GGGAAC\n______________|:||_||||||||_|:_:||||_____||||||\n______________AGCC_AGAACUAG_CU_UCUCC_____CCCUUG\n3'-UUU...AAAAA____U________A__A_____CCAAC______UCUCU...AUA-5'\n_____________|_________________________________|\n_____________54________________________________20\n |
215 -- 221 |
41 -- 47 |
-30.8017 kcal/mol |
10.1098 kcal/mol |
2.77573 kcal/mol |
209 240@LB@ | |@LB@5'-UGA...AAAAA C UUAC AUGCG...UAA-3'@LB@ UUGG UCUUGAUC GG GGAGG GGGAAC@LB@ |:|| |||||||| |: :|||| ||||||@LB@ AGCC AGAACUAG CU UCUCC CCCUUG@LB@3'-UUU...AAAAA U A A CCAAC UCUCU...AUA-5'@LB@ | |@LB@ 54 20@LB@@LB@@LB@Energy -17.92 kcal/mol@LB@Hybridization Energy -30.8017 kcal/mol@LB@Unfolding Energy - mRNA 10.1098 kcal/mol@LB@Unfolding Energy - sRNA 2.77573 kcal/mol@LB@@LB@Position - mRNA 210 -- 239@LB@Position - sRNA 21 -- 53@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 41 -- 47@LB@ |
141 |
0.01225 |
0.2883 |
bsu32310 |
yutD |
-11.41 |
0.131333 |
145 -- 158 |
24 -- 40 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 12770717 |
|
_____________144_______________159\n_____________|_________________|\n5'-ACA...GCAAU________AC_______CAAUG...AUA-3'\n______________UGAUGGGG_____GGGG\n______________||||:|:|_____||||\n______________ACUAUCUC_____CCCC\n3'-UUU...ACUAG________CCCAA____UUGUC...AUA-5'\n_____________|_________________|\n_____________41________________23\n |
146 -- 152 |
33 -- 39 |
-14.827 kcal/mol |
2.62921 kcal/mol |
0.790979 kcal/mol |
144 159@LB@ | |@LB@5'-ACA...GCAAU AC CAAUG...AUA-3'@LB@ UGAUGGGG GGGG@LB@ ||||:|:| ||||@LB@ ACUAUCUC CCCC@LB@3'-UUU...ACUAG CCCAA UUGUC...AUA-5'@LB@ | |@LB@ 41 23@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -14.827 kcal/mol@LB@Unfolding Energy - mRNA 2.62921 kcal/mol@LB@Unfolding Energy - sRNA 0.790979 kcal/mol@LB@@LB@Position - mRNA 145 -- 158@LB@Position - sRNA 24 -- 40@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 33 -- 39@LB@ |
37 |
0.00164 |
0.1432 |
bsu32390 |
yunF |
-13.99 |
0.047070 |
211 -- 231 |
31 -- 53 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________210_____________________232\n_____________|_______________________|\n5'-UGU...UUAUA___________CGG_________AUCAU...UUC-3'\n______________UCGGA_C_UGA___GAUGGGGGG\n______________|||||_|_|||___|||:|:|||\n______________AGCCU_G_ACU___CUAUCUCCC\n3'-UUU...AAAAA_____A_A___AGA_________CAACC...AUA-5'\n_____________|_______________________|\n_____________54______________________30\n |
225 -- 231 |
31 -- 37 |
-23.274 kcal/mol |
8.29838 kcal/mol |
0.981784 kcal/mol |
210 232@LB@ | |@LB@5'-UGU...UUAUA CGG AUCAU...UUC-3'@LB@ UCGGA C UGA GAUGGGGGG@LB@ ||||| | ||| |||:|:|||@LB@ AGCCU G ACU CUAUCUCCC@LB@3'-UUU...AAAAA A A AGA CAACC...AUA-5'@LB@ | |@LB@ 54 30@LB@@LB@@LB@Energy -13.99 kcal/mol@LB@Hybridization Energy -23.274 kcal/mol@LB@Unfolding Energy - mRNA 8.29838 kcal/mol@LB@Unfolding Energy - sRNA 0.981784 kcal/mol@LB@@LB@Position - mRNA 211 -- 231@LB@Position - sRNA 31 -- 53@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 31 -- 37@LB@ |
27 |
0.0005687 |
0.07027 |
bsu32550 |
yurJ |
-13.20 |
0.065709 |
183 -- 191 |
31 -- 39 |
ABC transporter ATP-binding protein |
|
_____________182_______192\n_____________|_________|\n5'-AAC...CAAAA_________ACUUU...UGC-3'\n______________GAUAGGGGG\n______________|||||:|||\n______________CUAUCUCCC\n3'-UUU...CUAGA_________CAACC...AUA-5'\n_____________|_________|\n_____________40________30\n |
185 -- 191 |
31 -- 37 |
-15.8488 kcal/mol |
1.87568 kcal/mol |
0.774822 kcal/mol |
182 192@LB@ | |@LB@5'-AAC...CAAAA ACUUU...UGC-3'@LB@ GAUAGGGGG@LB@ |||||:|||@LB@ CUAUCUCCC@LB@3'-UUU...CUAGA CAACC...AUA-5'@LB@ | |@LB@ 40 30@LB@@LB@@LB@Energy -13.20 kcal/mol@LB@Hybridization Energy -15.8488 kcal/mol@LB@Unfolding Energy - mRNA 1.87568 kcal/mol@LB@Unfolding Energy - sRNA 0.774822 kcal/mol@LB@@LB@Position - mRNA 183 -- 191@LB@Position - sRNA 31 -- 39@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 31 -- 37@LB@ |
116 |
0.01008 |
0.2881 |
bsu32800 |
yusH |
-9.74 |
0.231897 |
187 -- 194 |
31 -- 38 |
glycine cleavage system H protein |
|
_____________186______195\n_____________|________|\n5'-AUC...AAAAA________AUUCA...CCG-3'\n______________AUGGAGGG\n______________||:|||||\n______________UAUCUCCC\n3'-UUU...UAGAC________CAACC...AUA-5'\n_____________|________|\n_____________39_______30\n |
188 -- 194 |
31 -- 37 |
-12.574 kcal/mol |
2.17853 kcal/mol |
0.65488 kcal/mol |
186 195@LB@ | |@LB@5'-AUC...AAAAA AUUCA...CCG-3'@LB@ AUGGAGGG@LB@ ||:|||||@LB@ UAUCUCCC@LB@3'-UUU...UAGAC CAACC...AUA-5'@LB@ | |@LB@ 39 30@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -12.574 kcal/mol@LB@Unfolding Energy - mRNA 2.17853 kcal/mol@LB@Unfolding Energy - sRNA 0.65488 kcal/mol@LB@@LB@Position - mRNA 187 -- 194@LB@Position - sRNA 31 -- 38@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 31 -- 37@LB@ |
32 |
0.001154 |
0.119 |
bsu32820 |
fadE |
-9.01 |
0.290043 |
236 -- 252 |
32 -- 52 |
acyl-CoA dehydrogenase |
|
_____________235____________________253\n_____________|______________________|\n5'-AUU...GGCGG________UA____________AUGUC...AGC-3'\n______________CGGAUUUU__AUC_____GAGG\n______________|||||:||__|||_____||||\n______________GCCUAGAA__UAG_____CUCC\n3'-UUU...AAAAA________C____ACUAU____CCAAC...AUA-5'\n_____________|______________________|\n_____________53_____________________31\n |
237 -- 243 |
45 -- 51 |
-13.909 kcal/mol |
3.91995 kcal/mol |
0.976384 kcal/mol |
235 253@LB@ | |@LB@5'-AUU...GGCGG UA AUGUC...AGC-3'@LB@ CGGAUUUU AUC GAGG@LB@ |||||:|| ||| ||||@LB@ GCCUAGAA UAG CUCC@LB@3'-UUU...AAAAA C ACUAU CCAAC...AUA-5'@LB@ | |@LB@ 53 31@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -13.909 kcal/mol@LB@Unfolding Energy - mRNA 3.91995 kcal/mol@LB@Unfolding Energy - sRNA 0.976384 kcal/mol@LB@@LB@Position - mRNA 236 -- 252@LB@Position - sRNA 32 -- 52@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 45 -- 51@LB@ |
132 |
0.01159 |
0.2883 |
bsu33140 |
yvqJ |
-14.19 |
0.043338 |
185 -- 204 |
31 -- 52 |
MFS transporter |
|
_____________184____________________205\n_____________|______________________|\n5'-GAC...GGCAA____GG___C_________U__UGAAU...UUA-3'\n______________CGGG____G_UCUGAUGGA_GG\n______________|||:____|_||||||:||_||\n______________GCCU____C_AGACUAUCU_CC\n3'-UUU...AAAAA____AGAA_U_________C__CAACC...AUA-5'\n_____________|______________________|\n_____________53_____________________30\n |
195 -- 201 |
34 -- 40 |
-19.4408 kcal/mol |
4.27934 kcal/mol |
0.976414 kcal/mol |
184 205@LB@ | |@LB@5'-GAC...GGCAA GG C U UGAAU...UUA-3'@LB@ CGGG G UCUGAUGGA GG@LB@ |||: | ||||||:|| ||@LB@ GCCU C AGACUAUCU CC@LB@3'-UUU...AAAAA AGAA U C CAACC...AUA-5'@LB@ | |@LB@ 53 30@LB@@LB@@LB@Energy -14.19 kcal/mol@LB@Hybridization Energy -19.4408 kcal/mol@LB@Unfolding Energy - mRNA 4.27934 kcal/mol@LB@Unfolding Energy - sRNA 0.976414 kcal/mol@LB@@LB@Position - mRNA 185 -- 204@LB@Position - sRNA 31 -- 52@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 34 -- 40@LB@ |
93 |
0.007837 |
0.2778 |
bsu33430 |
yvgQ |
-5.79 |
0.632053 |
172 -- 180 |
38 -- 46 |
sulfite reductase [NADPH] hemoprotein beta-component |
|
_____________171_______181\n_____________|_________|\n5'-GCU...GUAUA_________CUUGA...UGA-3'\n______________UUGAUUUGA\n______________|||||:|||\n______________AACUAGACU\n3'-UUU...CCUAG_________AUCUC...AUA-5'\n_____________|_________|\n_____________47________37\n |
174 -- 180 |
38 -- 44 |
-9.05403 kcal/mol |
2.31378 kcal/mol |
0.946105 kcal/mol |
171 181@LB@ | |@LB@5'-GCU...GUAUA CUUGA...UGA-3'@LB@ UUGAUUUGA@LB@ |||||:|||@LB@ AACUAGACU@LB@3'-UUU...CCUAG AUCUC...AUA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -5.79 kcal/mol@LB@Hybridization Energy -9.05403 kcal/mol@LB@Unfolding Energy - mRNA 2.31378 kcal/mol@LB@Unfolding Energy - sRNA 0.946105 kcal/mol@LB@@LB@Position - mRNA 172 -- 180@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 38 -- 44@LB@ |