| 88 |
0.006855 |
0.2588 |
bsu03770 |
rapC |
-14.27 |
0.041792 |
179 -- 211 |
12 -- 42 |
response regulator aspartate phosphatase C |
|
_____________178_______________________________212\n_____________|_________________________________|\n5'-UCA...CAGUU______G____A____GAA______A_______GGUAA...UAA-3'\n______________UUUGAU_GGAG_GGGU___GGAAUG_AGAGUGG\n______________|:||||_:|||_||||___||||::_|||||:|\n______________AGACUA_UCUC_CCCA___CCUUGU_UCUCAUC\n3'-UUU...GAACU________________ACC______C_______GAAGA...AUA-5'\n_____________|_________________________________|\n_____________43________________________________11\n |
205 -- 211 |
12 -- 18 |
-33.0113 kcal/mol |
8.84839 kcal/mol |
9.89449 kcal/mol |
178 212@LB@ | |@LB@5'-UCA...CAGUU G A GAA A GGUAA...UAA-3'@LB@ UUUGAU GGAG GGGU GGAAUG AGAGUGG@LB@ |:|||| :||| |||| ||||:: |||||:|@LB@ AGACUA UCUC CCCA CCUUGU UCUCAUC@LB@3'-UUU...GAACU ACC C GAAGA...AUA-5'@LB@ | |@LB@ 43 11@LB@@LB@@LB@Energy -14.27 kcal/mol@LB@Hybridization Energy -33.0113 kcal/mol@LB@Unfolding Energy - mRNA 8.84839 kcal/mol@LB@Unfolding Energy - sRNA 9.89449 kcal/mol@LB@@LB@Position - mRNA 179 -- 211@LB@Position - sRNA 12 -- 42@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 56 |
0.002918 |
0.1738 |
bsu04390 |
ydbA |
-13.95 |
0.047884 |
245 -- 258 |
25 -- 39 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________244_____________259\n_____________|_______________|\n5'-UUC...AAAGA_______AAA_____AAAAA...GCC-3'\n______________GAUAGAG____UGGG\n______________|||||||____||||\n______________CUAUCUC____ACCC\n3'-UUU...CUAGA_______CCCA____CUUGU...AUA-5'\n_____________|_______________|\n_____________40______________24\n |
245 -- 251 |
33 -- 39 |
-15.533 kcal/mol |
0.795684 kcal/mol |
0.783603 kcal/mol |
244 259@LB@ | |@LB@5'-UUC...AAAGA AAA AAAAA...GCC-3'@LB@ GAUAGAG UGGG@LB@ ||||||| ||||@LB@ CUAUCUC ACCC@LB@3'-UUU...CUAGA CCCA CUUGU...AUA-5'@LB@ | |@LB@ 40 24@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -15.533 kcal/mol@LB@Unfolding Energy - mRNA 0.795684 kcal/mol@LB@Unfolding Energy - sRNA 0.783603 kcal/mol@LB@@LB@Position - mRNA 245 -- 258@LB@Position - sRNA 25 -- 39@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 193 |
0.01926 |
0.3269 |
bsu04460 |
dctR |
-12.61 |
0.083358 |
128 -- 157 |
20 -- 50 |
C4-dicarboxylate response regulator DctR |
|
_____________127_____________________________158\n_____________|_______________________________|\n5'-CUG...CGAUA__AG______CACAU_C____CA________UCUUU...UCU-3'\n______________GA__UUGAUU_____G_GGGG___GGGGACA\n______________||__|||||:_____|_||||___|||:|||\n______________CU__AACUAG_____C_CCCC___CCCUUGU\n3'-UUU...AAAGC__AG______ACUAU_U____AAC_______CUCUC...AUA-5'\n_____________|_______________________________|\n_____________51______________________________19\n |
151 -- 157 |
20 -- 26 |
-24.008 kcal/mol |
7.17274 kcal/mol |
4.22897 kcal/mol |
127 158@LB@ | |@LB@5'-CUG...CGAUA AG CACAU C CA UCUUU...UCU-3'@LB@ GA UUGAUU G GGGG GGGGACA@LB@ || |||||: | |||| |||:|||@LB@ CU AACUAG C CCCC CCCUUGU@LB@3'-UUU...AAAGC AG ACUAU U AAC CUCUC...AUA-5'@LB@ | |@LB@ 51 19@LB@@LB@@LB@Energy -12.61 kcal/mol@LB@Hybridization Energy -24.008 kcal/mol@LB@Unfolding Energy - mRNA 7.17274 kcal/mol@LB@Unfolding Energy - sRNA 4.22897 kcal/mol@LB@@LB@Position - mRNA 128 -- 157@LB@Position - sRNA 20 -- 50@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 175 |
0.01672 |
0.3152 |
bsu04630 |
ydcC |
-11.64 |
0.120416 |
196 -- 203 |
27 -- 34 |
sporulation protein YdcC |
|
_____________195______204\n_____________|________|\n5'-CCG...GAAAA________AAAAA...UGG-3'\n______________AGGGGUUG\n______________||||||||\n______________UCCCCAAC\n3'-UUU...CUAUC________CCCUU...AUA-5'\n_____________|________|\n_____________35_______26\n |
197 -- 203 |
27 -- 33 |
-14.5305 kcal/mol |
2.76844 kcal/mol |
0.118612 kcal/mol |
195 204@LB@ | |@LB@5'-CCG...GAAAA AAAAA...UGG-3'@LB@ AGGGGUUG@LB@ ||||||||@LB@ UCCCCAAC@LB@3'-UUU...CUAUC CCCUU...AUA-5'@LB@ | |@LB@ 35 26@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -14.5305 kcal/mol@LB@Unfolding Energy - mRNA 2.76844 kcal/mol@LB@Unfolding Energy - sRNA 0.118612 kcal/mol@LB@@LB@Position - mRNA 196 -- 203@LB@Position - sRNA 27 -- 34@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 171 |
0.01646 |
0.3152 |
bsu04650 |
endB |
-11.87 |
0.110785 |
167 -- 193 |
29 -- 53 |
antitoxin EndoAI |
|
_____________166_________________________194\n_____________|___________________________|\n5'-UUC...AAGAG___U___CGUAA____________U__AUGUU...GAA-3'\n______________UCG_AUC_____GUUUGGUGGAGG_GU\n______________|||_|||_____:|:||:|:||||_||\n______________AGC_UAG_____UAGACUAUCUCC_CA\n3'-UUU...AAAAA___C___AAC______________C__ACCCC...AUA-5'\n_____________|___________________________|\n_____________54__________________________28\n |
184 -- 190 |
32 -- 38 |
-19.891 kcal/mol |
7.03825 kcal/mol |
0.985603 kcal/mol |
166 194@LB@ | |@LB@5'-UUC...AAGAG U CGUAA U AUGUU...GAA-3'@LB@ UCG AUC GUUUGGUGGAGG GU@LB@ ||| ||| :|:||:|:|||| ||@LB@ AGC UAG UAGACUAUCUCC CA@LB@3'-UUU...AAAAA C AAC C ACCCC...AUA-5'@LB@ | |@LB@ 54 28@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -19.891 kcal/mol@LB@Unfolding Energy - mRNA 7.03825 kcal/mol@LB@Unfolding Energy - sRNA 0.985603 kcal/mol@LB@@LB@Position - mRNA 167 -- 193@LB@Position - sRNA 29 -- 53@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 197 |
0.0195 |
0.3269 |
bsu04670 |
rsbRA |
-10.67 |
0.170227 |
19 -- 37 |
34 -- 52 |
RsbT co-antagonist protein RsbRA |
|
_____________18__________________38\n_____________|___________________|\n5'-CGG...UCAUC_____GA___AA_______UAAGG...AAU-3'\n______________UGGAU__UGA__UGAUGGA\n______________:||||__|||__||||:||\n______________GCCUA__ACU__ACUAUCU\n3'-UUU...AAAAA_____GA___AG_______CCCCA...AUA-5'\n_____________|___________________|\n_____________53__________________33\n |
31 -- 37 |
34 -- 40 |
-17.5102 kcal/mol |
5.86002 kcal/mol |
0.976339 kcal/mol |
18 38@LB@ | |@LB@5'-CGG...UCAUC GA AA UAAGG...AAU-3'@LB@ UGGAU UGA UGAUGGA@LB@ :|||| ||| ||||:||@LB@ GCCUA ACU ACUAUCU@LB@3'-UUU...AAAAA GA AG CCCCA...AUA-5'@LB@ | |@LB@ 53 33@LB@@LB@@LB@Energy -10.67 kcal/mol@LB@Hybridization Energy -17.5102 kcal/mol@LB@Unfolding Energy - mRNA 5.86002 kcal/mol@LB@Unfolding Energy - sRNA 0.976339 kcal/mol@LB@@LB@Position - mRNA 19 -- 37@LB@Position - sRNA 34 -- 52@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 20 |
0.0003727 |
0.06216 |
bsu04690 |
rsbT |
-12.89 |
0.074349 |
161 -- 193 |
22 -- 51 |
serine/threonine protein kinase |
|
_____________160________________________________194\n_____________|__________________________________|\n5'-UUG...GAGCA__GG_____GACAU______C___AA________AUAGC...CGG-3'\n______________GG__CUUGA_____UGA_AG_GGG__UUGGGGGA\n______________||__|||||_____|||_||_|||__||||||:|\n______________CC__GAACU_____ACU_UC_CCC__AACCCCUU\n3'-UUU...AAAAG__UA_____AG______A__U___C_________GUCUC...AUA-5'\n_____________|__________________________________|\n_____________52_________________________________21\n |
187 -- 193 |
22 -- 28 |
-26.679 kcal/mol |
11.9064 kcal/mol |
1.87888 kcal/mol |
160 194@LB@ | |@LB@5'-UUG...GAGCA GG GACAU C AA AUAGC...CGG-3'@LB@ GG CUUGA UGA AG GGG UUGGGGGA@LB@ || ||||| ||| || ||| ||||||:|@LB@ CC GAACU ACU UC CCC AACCCCUU@LB@3'-UUU...AAAAG UA AG A U C GUCUC...AUA-5'@LB@ | |@LB@ 52 21@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -26.679 kcal/mol@LB@Unfolding Energy - mRNA 11.9064 kcal/mol@LB@Unfolding Energy - sRNA 1.87888 kcal/mol@LB@@LB@Position - mRNA 161 -- 193@LB@Position - sRNA 22 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 161 |
0.01452 |
0.3008 |
bsu04700 |
rsbU |
-15.42 |
0.024826 |
142 -- 163 |
16 -- 38 |
phosphoserine phosphatase RsbU |
|
_____________141_____________________164\n_____________|_______________________|\n5'-CUG...AUUCC____C____GAA___________UACAA...UCA-3'\n______________GUAG_GGGG____GGAACAGAGA\n______________:|||_||||____||||||||||\n______________UAUC_CCCC____CCUUGUCUCU\n3'-UUU...UAGAC____U____AACC__________CAUCG...AUA-5'\n_____________|_______________________|\n_____________39______________________15\n |
157 -- 163 |
16 -- 22 |
-28.36 kcal/mol |
3.46196 kcal/mol |
9.47701 kcal/mol |
141 164@LB@ | |@LB@5'-CUG...AUUCC C GAA UACAA...UCA-3'@LB@ GUAG GGGG GGAACAGAGA@LB@ :||| |||| ||||||||||@LB@ UAUC CCCC CCUUGUCUCU@LB@3'-UUU...UAGAC U AACC CAUCG...AUA-5'@LB@ | |@LB@ 39 15@LB@@LB@@LB@Energy -15.42 kcal/mol@LB@Hybridization Energy -28.36 kcal/mol@LB@Unfolding Energy - mRNA 3.46196 kcal/mol@LB@Unfolding Energy - sRNA 9.47701 kcal/mol@LB@@LB@Position - mRNA 142 -- 163@LB@Position - sRNA 16 -- 38@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 190 |
0.01911 |
0.3269 |
bsu05370 |
ydfD |
-12.16 |
0.099313 |
269 -- 294 |
11 -- 36 |
GntR family transcriptional regulator |
bsu10880 |
_____________268________________________295\n_____________|__________________________|\n5'-AAA...AUUAA____AAAAUA__A_____________CGAUUG-3'\n______________AGAG______GG_AAUGGAGAGUGGC\n______________||||______||_||::||||||:||\n______________UCUC______CC_UUGUCUCUCAUCG\n3'-UUU...GACUA____CCCAAC__C_____________AAGAG...AUA-5'\n_____________|__________________________|\n_____________37_________________________10\n |
288 -- 294 |
11 -- 17 |
-24.9379 kcal/mol |
3.68177 kcal/mol |
9.10067 kcal/mol |
268 295@LB@ | |@LB@5'-AAA...AUUAA AAAAUA A CGAUUG-3'@LB@ AGAG GG AAUGGAGAGUGGC@LB@ |||| || ||::||||||:||@LB@ UCUC CC UUGUCUCUCAUCG@LB@3'-UUU...GACUA CCCAAC C AAGAG...AUA-5'@LB@ | |@LB@ 37 10@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -24.9379 kcal/mol@LB@Unfolding Energy - mRNA 3.68177 kcal/mol@LB@Unfolding Energy - sRNA 9.10067 kcal/mol@LB@@LB@Position - mRNA 269 -- 294@LB@Position - sRNA 11 -- 36@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 7 |
4.152e-05 |
0.01979 |
bsu05670 |
ydgJ |
-17.13 |
0.010734 |
234 -- 258 |
25 -- 49 |
MarR family transcriptional regulator |
|
_____________233_______________________259\n_____________|_________________________|\n5'-AAG...UAAUA_______CAG__A___A___A____UUUUG...AUC-3'\n______________GUUUUGA___GA_AGA_GGG_UGGG\n______________:|:||||___||_|||_|||_||||\n______________UAGAACU___CU_UCU_CCC_ACCC\n3'-UUU...AAGCC_______AGA__A___C___A____CUUGU...AUA-5'\n_____________|_________________________|\n_____________50________________________24\n |
234 -- 240 |
43 -- 49 |
-20.9262 kcal/mol |
2.82407 kcal/mol |
0.976049 kcal/mol |
233 259@LB@ | |@LB@5'-AAG...UAAUA CAG A A A UUUUG...AUC-3'@LB@ GUUUUGA GA AGA GGG UGGG@LB@ :|:|||| || ||| ||| ||||@LB@ UAGAACU CU UCU CCC ACCC@LB@3'-UUU...AAGCC AGA A C A CUUGU...AUA-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -17.13 kcal/mol@LB@Hybridization Energy -20.9262 kcal/mol@LB@Unfolding Energy - mRNA 2.82407 kcal/mol@LB@Unfolding Energy - sRNA 0.976049 kcal/mol@LB@@LB@Position - mRNA 234 -- 258@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 43 -- 49@LB@ |
