99 |
0.006147 |
0.2179 |
b4477 |
dgoA |
-14.15 |
0.044006 |
176 -- 210 |
1 -- 31 |
2-oxo-3-deoxygalactonate 6-phosphate aldolase |
|
_____________175___________________________________211\n_____________|_____________________________________|\n5'-CAG...CAUUU____C___UAUAA___G_____CUCAU__________AAACU...UCG-3'\n______________CAGG_UGG_____GGA_CAUCG_______GCAGUGGC\n______________||::_|||_____|||_||||:_______||||||||\n______________GUUU_ACC_____CCU_GUAGU_______CGUCACCG\n3'-UUU...GAGGU____U_________________UUCUUUU________-5'\n_____________|____________________________________|\n_____________32___________________________________1\n |
204 -- 210 |
1 -- 7 |
-26.5297 kcal/mol |
9.84206 kcal/mol |
2.53929 kcal/mol |
175 211@LB@ | |@LB@5'-CAG...CAUUU C UAUAA G CUCAU AAACU...UCG-3'@LB@ CAGG UGG GGA CAUCG GCAGUGGC@LB@ ||:: ||| ||| ||||: ||||||||@LB@ GUUU ACC CCU GUAGU CGUCACCG@LB@3'-UUU...GAGGU U UUCUUUU -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -26.5297 kcal/mol@LB@Unfolding Energy - mRNA 9.84206 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 176 -- 210@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 1 -- 7@LB@ |
131 |
0.009354 |
0.2491 |
b4478 |
dgoD |
-14.24 |
0.041949 |
180 -- 199 |
1 -- 22 |
D-galactonate dehydratase |
|
_____________179____________________200\n_____________|______________________|\n5'-AAA...GUUAA_____AUC______________AAUGA...UGA-3'\n______________GGCGU____GAGAGGCAGUG_C\n______________|:|:|____||:|:||||||_|\n______________CUGUA____CUUUUCGUCAC_G\n3'-UUU...UACCC_____GUUU___________C_-5'\n_____________|_____________________|\n_____________23____________________1\n |
192 -- 198 |
3 -- 9 |
-21.1696 kcal/mol |
5.38995 kcal/mol |
1.54023 kcal/mol |
179 200@LB@ | |@LB@5'-AAA...GUUAA AUC AAUGA...UGA-3'@LB@ GGCGU GAGAGGCAGUG C@LB@ |:|:| ||:|:|||||| |@LB@ CUGUA CUUUUCGUCAC G@LB@3'-UUU...UACCC GUUU C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -21.1696 kcal/mol@LB@Unfolding Energy - mRNA 5.38995 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 180 -- 199@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 3 -- 9@LB@ |
53 |
0.002642 |
0.1735 |
b0055 |
djlA |
-12.56 |
0.096184 |
186 -- 227 |
1 -- 31 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________185________________________________________228\n_____________|__________________________________________|\n5'-GAC...UGUGU___UU______AUAUAUGCAG____________AU__U____GUGGC...UUG-3'\n______________CGA__UGGGGA__________UAUUGGGGAAAA__CA_UGGC\n______________|:|__||||||__________:||::::|||||__||_||||\n______________GUU__ACCCCU__________GUAGUUUCUUUU__GU_ACCG\n3'-UUU...GAGGU___UU____________________________C___C____-5'\n_____________|_________________________________________|\n_____________32________________________________________1\n |
212 -- 218 |
9 -- 15 |
-25.7115 kcal/mol |
10.6128 kcal/mol |
2.53929 kcal/mol |
185 228@LB@ | |@LB@5'-GAC...UGUGU UU AUAUAUGCAG AU U GUGGC...UUG-3'@LB@ CGA UGGGGA UAUUGGGGAAAA CA UGGC@LB@ |:| |||||| :||::::||||| || ||||@LB@ GUU ACCCCU GUAGUUUCUUUU GU ACCG@LB@3'-UUU...GAGGU UU C C -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -12.56 kcal/mol@LB@Hybridization Energy -25.7115 kcal/mol@LB@Unfolding Energy - mRNA 10.6128 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 186 -- 227@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 9 -- 15@LB@ |
109 |
0.007372 |
0.2348 |
b3701 |
dnaN |
-13.44 |
0.063163 |
149 -- 162 |
9 -- 22 |
DNA polymerase III beta subunit |
|
_____________148____________163\n_____________|______________|\n5'-GGC...GCCAC______________UUUUU...UGC-3'\n______________GAUAUCAAAGAAGA\n______________||:|||||||||:|\n______________CUGUAGUUUCUUUU\n3'-UUU...UACCC______________CGUCACCG-5'\n_____________|______________|\n_____________23_____________8\n |
156 -- 162 |
9 -- 15 |
-16.0152 kcal/mol |
2.0875 kcal/mol |
0.488786 kcal/mol |
148 163@LB@ | |@LB@5'-GGC...GCCAC UUUUU...UGC-3'@LB@ GAUAUCAAAGAAGA@LB@ ||:|||||||||:|@LB@ CUGUAGUUUCUUUU@LB@3'-UUU...UACCC CGUCACCG-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -13.44 kcal/mol@LB@Hybridization Energy -16.0152 kcal/mol@LB@Unfolding Energy - mRNA 2.0875 kcal/mol@LB@Unfolding Energy - sRNA 0.488786 kcal/mol@LB@@LB@Position - mRNA 149 -- 162@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 9 -- 15@LB@ |
146 |
0.01079 |
0.2504 |
b2453 |
eutG |
-16.22 |
0.013596 |
18 -- 37 |
1 -- 22 |
ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
|
_____________17_____________________38\n_____________|______________________|\n5'-GGC...CGCCC_____AUU______________AUUAC...GUC-3'\n______________GGCAU____GAAGGGCAG_GGC\n______________|:|||____|||::||||_|||\n______________CUGUA____CUUUUCGUC_CCG\n3'-UUU...UACCC_____GUUU_________A___-5'\n_____________|_____________________|\n_____________23____________________1\n |
28 -- 34 |
5 -- 11 |
-23.1742 kcal/mol |
5.41796 kcal/mol |
1.54023 kcal/mol |
17 38@LB@ | |@LB@5'-GGC...CGCCC AUU AUUAC...GUC-3'@LB@ GGCAU GAAGGGCAG GGC@LB@ |:||| |||::|||| |||@LB@ CUGUA CUUUUCGUC CCG@LB@3'-UUU...UACCC GUUU A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -23.1742 kcal/mol@LB@Unfolding Energy - mRNA 5.41796 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 18 -- 37@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 5 -- 11@LB@ |
171 |
0.01235 |
0.2504 |
b1092 |
fabD |
-9.75 |
0.300248 |
258 -- 270 |
47 -- 59 |
malonyl-CoA-[acyl-carrier-protein] transacylase |
|
_____________257___________271\n_____________|_____________|\n5'-AAC...UGCUG_____U_______CGAGC...UUG-3'\n______________GCUGA_AUGGCGG\n______________:|:||_|||||||\n______________UGGCU_UACCGCC\n3'-UUU...GAACU_____U_______CCAAC...CCG-5'\n_____________|_____________|\n_____________60____________46\n |
264 -- 270 |
47 -- 53 |
-17.9053 kcal/mol |
4.19285 kcal/mol |
3.96442 kcal/mol |
257 271@LB@ | |@LB@5'-AAC...UGCUG U CGAGC...UUG-3'@LB@ GCUGA AUGGCGG@LB@ :|:|| |||||||@LB@ UGGCU UACCGCC@LB@3'-UUU...GAACU U CCAAC...CCG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -17.9053 kcal/mol@LB@Unfolding Energy - mRNA 4.19285 kcal/mol@LB@Unfolding Energy - sRNA 3.96442 kcal/mol@LB@@LB@Position - mRNA 258 -- 270@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 47 -- 53@LB@ |
114 |
0.007692 |
0.2368 |
b0584 |
fepA |
-13.71 |
0.055244 |
241 -- 265 |
1 -- 26 |
ferrienterobactin outer membrane transporter |
|
_____________240________________________266\n_____________|__________________________|\n5'-GAA...CAAUC___________U____U____CA___ACAAG...ACG-3'\n______________UGGGGAU_UUA_GGGG_AGCG__GGC\n______________||||||:_|:|_:|::_|||:__|||\n______________ACCCCUG_AGU_UCUU_UCGU__CCG\n3'-UUU...GUUUU_______U___U____U____CA___-5'\n_____________|_________________________|\n_____________27________________________1\n |
241 -- 247 |
20 -- 26 |
-24.8633 kcal/mol |
8.63835 kcal/mol |
2.51842 kcal/mol |
240 266@LB@ | |@LB@5'-GAA...CAAUC U U CA ACAAG...ACG-3'@LB@ UGGGGAU UUA GGGG AGCG GGC@LB@ ||||||: |:| :|:: |||: |||@LB@ ACCCCUG AGU UCUU UCGU CCG@LB@3'-UUU...GUUUU U U U CA -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -24.8633 kcal/mol@LB@Unfolding Energy - mRNA 8.63835 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 241 -- 265@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 20 -- 26@LB@ |
128 |
0.00928 |
0.2491 |
b0491 |
fetB |
-12.70 |
0.090276 |
178 -- 195 |
1 -- 17 |
iron export ABC transporter permease; peroxide resistance protein |
|
_____________177________________196\n_____________|__________________|\n5'-GCC...CAUGC________U____GAA__ACGCU...AGA-3'\n______________CGGAGAAA_GCAG___GC\n______________|::|||||_||||___||\n______________GUUUCUUU_CGUC___CG\n3'-UUU...CUGUA________U____AC___-5'\n_____________|_________________|\n_____________18________________1\n |
179 -- 185 |
10 -- 16 |
-17.1669 kcal/mol |
3.03232 kcal/mol |
1.43853 kcal/mol |
177 196@LB@ | |@LB@5'-GCC...CAUGC U GAA ACGCU...AGA-3'@LB@ CGGAGAAA GCAG GC@LB@ |::||||| |||| ||@LB@ GUUUCUUU CGUC CG@LB@3'-UUU...CUGUA U AC -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -17.1669 kcal/mol@LB@Unfolding Energy - mRNA 3.03232 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 178 -- 195@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 10 -- 16@LB@ |
83 |
0.005101 |
0.2147 |
b2610 |
ffh |
-14.32 |
0.040245 |
57 -- 74 |
4 -- 21 |
Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
|
_____________56_________________75\n_____________|__________________|\n5'-AGG...GAGCA___AG_____________AUAGC...AAG-3'\n______________AUA__AAAGAGAAGCAGU\n______________|:|__|||||:|||||||\n______________UGU__UUUCUUUUCGUCA\n3'-UUU...ACCCC___AG_____________CCG-5'\n_____________|__________________|\n_____________22_________________3\n |
68 -- 74 |
4 -- 10 |
-18.2522 kcal/mol |
2.42435 kcal/mol |
1.51 kcal/mol |
56 75@LB@ | |@LB@5'-AGG...GAGCA AG AUAGC...AAG-3'@LB@ AUA AAAGAGAAGCAGU@LB@ |:| |||||:|||||||@LB@ UGU UUUCUUUUCGUCA@LB@3'-UUU...ACCCC AG CCG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -14.32 kcal/mol@LB@Hybridization Energy -18.2522 kcal/mol@LB@Unfolding Energy - mRNA 2.42435 kcal/mol@LB@Unfolding Energy - sRNA 1.51 kcal/mol@LB@@LB@Position - mRNA 57 -- 74@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 4 -- 10@LB@ |
150 |
0.01097 |
0.2504 |
b1878 |
flhE |
-16.24 |
0.013409 |
257 -- 279 |
3 -- 25 |
proton seal during flagellar secretion |
|
_____________256_____________________280\n_____________|_______________________|\n5'-CGU...GGGGA________G_C___C________UAGGA...AUC-3'\n______________GGGGAUGU_G_AGG_AAGUAGUG\n______________|||||::|_:_||:_|||:||||\n______________CCCCUGUA_U_UCU_UUCGUCAC\n3'-UUU...UUUUA________G_U___U________CG-5'\n_____________|_______________________|\n_____________26______________________2\n |
273 -- 279 |
3 -- 9 |
-26.0465 kcal/mol |
7.2914 kcal/mol |
2.5166 kcal/mol |
256 280@LB@ | |@LB@5'-CGU...GGGGA G C C UAGGA...AUC-3'@LB@ GGGGAUGU G AGG AAGUAGUG@LB@ |||||::| : ||: |||:||||@LB@ CCCCUGUA U UCU UUCGUCAC@LB@3'-UUU...UUUUA G U U CG-5'@LB@ | |@LB@ 26 2@LB@@LB@@LB@Energy -16.24 kcal/mol@LB@Hybridization Energy -26.0465 kcal/mol@LB@Unfolding Energy - mRNA 7.2914 kcal/mol@LB@Unfolding Energy - sRNA 2.5166 kcal/mol@LB@@LB@Position - mRNA 257 -- 279@LB@Position - sRNA 3 -- 25@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 3 -- 9@LB@ |