| 20 |
0.0007622 |
0.1243 |
b1507 |
hipA |
-19.17 |
0.001718 |
1 -- 29 |
1 -- 31 |
inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
|
______________1________________________________30\n______________|________________________________|\n___________5'-________CU___________C___________GAAAA...UAG-3'\n______________CAAAAUGG__GGACG_CAGAG__GAGC__UGGC\n______________||||||||__||||:_||:||__:|||__||||\n______________GUUUUACC__CCUGU_GUUUC__UUCG__ACCG\n3'-UUU...GAGGU_______________A_____UU____UC____-5'\n_____________|________________________________|\n_____________32_______________________________1\n |
2 -- 8 |
24 -- 30 |
-30.0086 kcal/mol |
8.29611 kcal/mol |
2.53929 kcal/mol |
1 30@LB@ | |@LB@ 5'- CU C GAAAA...UAG-3'@LB@ CAAAAUGG GGACG CAGAG GAGC UGGC@LB@ |||||||| ||||: ||:|| :||| ||||@LB@ GUUUUACC CCUGU GUUUC UUCG ACCG@LB@3'-UUU...GAGGU A UU UC -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -19.17 kcal/mol@LB@Hybridization Energy -30.0086 kcal/mol@LB@Unfolding Energy - mRNA 8.29611 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 1 -- 29@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 118 |
0.008241 |
0.2451 |
b3394 |
hofN |
-17.25 |
0.007000 |
1 -- 22 |
2 -- 26 |
DNA catabolic putative fimbrial assembly protein |
|
______________1________________________23\n______________|________________________|\n___________5'-_____________CU__________GGAUG...CCG-3'\n______________UGGGGGCG_CAAA____GGCGGUGG\n______________|||||:|:_||||____:||:||||\n______________ACCCCUGU_GUUU____UCGUCACC\n3'-UUU...GUUUU________A____CUUU________G-5'\n_____________|_________________________|\n_____________27________________________1\n |
16 -- 22 |
2 -- 8 |
-29.7277 kcal/mol |
9.95926 kcal/mol |
2.5184 kcal/mol |
1 23@LB@ | |@LB@ 5'- CU GGAUG...CCG-3'@LB@ UGGGGGCG CAAA GGCGGUGG@LB@ |||||:|: |||| :||:||||@LB@ ACCCCUGU GUUU UCGUCACC@LB@3'-UUU...GUUUU A CUUU G-5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -17.25 kcal/mol@LB@Hybridization Energy -29.7277 kcal/mol@LB@Unfolding Energy - mRNA 9.95926 kcal/mol@LB@Unfolding Energy - sRNA 2.5184 kcal/mol@LB@@LB@Position - mRNA 1 -- 22@LB@Position - sRNA 2 -- 26@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 168 |
0.01219 |
0.2504 |
b1830 |
prc |
-10.01 |
0.273454 |
1 -- 12 |
6 -- 17 |
carboxy-terminal protease for penicillin-binding protein 3 |
|
______________1___________13\n______________|___________|\n___________5'-_______C____CACCC...CGG-3'\n______________CGAAGAA_AGCA\n______________|:|||||_||||\n______________GUUUCUU_UCGU\n3'-UUU...CUGUA_______U____CACCG-5'\n_____________|____________|\n_____________18___________5\n |
1 -- 7 |
11 -- 17 |
-11.3077 kcal/mol |
0.751361 kcal/mol |
0.542636 kcal/mol |
1 13@LB@ | |@LB@ 5'- C CACCC...CGG-3'@LB@ CGAAGAA AGCA@LB@ |:||||| ||||@LB@ GUUUCUU UCGU@LB@3'-UUU...CUGUA U CACCG-5'@LB@ | |@LB@ 18 5@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -11.3077 kcal/mol@LB@Unfolding Energy - mRNA 0.751361 kcal/mol@LB@Unfolding Energy - sRNA 0.542636 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 6 -- 17@LB@Position Seed - mRNA 1 -- 7@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 45 |
0.002187 |
0.1648 |
b3391 |
hofQ |
-14.99 |
0.027914 |
2 -- 20 |
1 -- 20 |
DNA catabolic putative fimbrial transporter |
|
_____________1____________________21\n_____________|____________________|\n__________5'-C__________U_________GAGGC...UAG-3'\n______________UAUCAGGGGA_GGUAG_GGC\n______________:||||::|:|_:|:||_|||\n______________GUAGUUUCUU_UCGUC_CCG\n3'-UUU...CCCCU__________U_____A___-5'\n_____________|___________________|\n_____________21__________________1\n |
5 -- 11 |
11 -- 17 |
-22.4478 kcal/mol |
5.99969 kcal/mol |
1.45855 kcal/mol |
1 21@LB@ | |@LB@ 5'-C U GAGGC...UAG-3'@LB@ UAUCAGGGGA GGUAG GGC@LB@ :||||::|:| :|:|| |||@LB@ GUAGUUUCUU UCGUC CCG@LB@3'-UUU...CCCCU U A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -22.4478 kcal/mol@LB@Unfolding Energy - mRNA 5.99969 kcal/mol@LB@Unfolding Energy - sRNA 1.45855 kcal/mol@LB@@LB@Position - mRNA 2 -- 20@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 82 |
0.005087 |
0.2147 |
b2741 |
rpoS |
-15.46 |
0.021295 |
2 -- 28 |
1 -- 25 |
RNA polymerase sigma S (sigma 38) factor |
|
_____________1____________________________29\n_____________|____________________________|\n__________5'-C___A___ACAA____UU___________AAAAA...AGG-3'\n______________GGG_ACA____GAAG__AAGGCGG_GGC\n______________|||_|||____:|||__||:||:|_|||\n______________CCC_UGU____UUUC__UUUCGUC_CCG\n3'-UUU...UUUUA___C___AG______U________A___-5'\n_____________|___________________________|\n_____________26__________________________1\n |
19 -- 25 |
5 -- 11 |
-23.9329 kcal/mol |
5.95047 kcal/mol |
2.51748 kcal/mol |
1 29@LB@ | |@LB@ 5'-C A ACAA UU AAAAA...AGG-3'@LB@ GGG ACA GAAG AAGGCGG GGC@LB@ ||| ||| :||| ||:||:| |||@LB@ CCC UGU UUUC UUUCGUC CCG@LB@3'-UUU...UUUUA C AG U A -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -15.46 kcal/mol@LB@Hybridization Energy -23.9329 kcal/mol@LB@Unfolding Energy - mRNA 5.95047 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 2 -- 28@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 52 |
0.002562 |
0.1729 |
b0881 |
clpS |
-16.21 |
0.013666 |
11 -- 25 |
5 -- 25 |
regulatory protein for ClpA substrate specificity |
|
_____________10____________________26\n_____________|_____________________|\n5'-GCA...UGACA_____________________GUAUG...UCA-3'\n______________GGGGACA______AGGGGCAG\n______________|||||||______|:::||||\n______________CCCCUGU______UUUUCGUC\n3'-UUU...UUUUA_______AGUUUC________ACCG-5'\n_____________|_____________________|\n_____________26____________________4\n |
19 -- 25 |
5 -- 11 |
-21.27 kcal/mol |
2.56205 kcal/mol |
2.50017 kcal/mol |
10 26@LB@ | |@LB@5'-GCA...UGACA GUAUG...UCA-3'@LB@ GGGGACA AGGGGCAG@LB@ ||||||| |:::||||@LB@ CCCCUGU UUUUCGUC@LB@3'-UUU...UUUUA AGUUUC ACCG-5'@LB@ | |@LB@ 26 4@LB@@LB@@LB@Energy -16.21 kcal/mol@LB@Hybridization Energy -21.27 kcal/mol@LB@Unfolding Energy - mRNA 2.56205 kcal/mol@LB@Unfolding Energy - sRNA 2.50017 kcal/mol@LB@@LB@Position - mRNA 11 -- 25@LB@Position - sRNA 5 -- 25@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 125 |
0.009022 |
0.2491 |
b0658 |
ybeX |
-16.01 |
0.015431 |
14 -- 34 |
5 -- 21 |
putative ion transport |
|
_____________13____________________35\n_____________|_____________________|\n5'-UUA...CGAUC__________UGAC_______AAGAA...ACC-3'\n______________ACAUCGAAGA____GAAGCAG\n______________|||||:||||____:||||||\n______________UGUAGUUUCU____UUUCGUC\n3'-UUU...ACCCC_____________________ACCG-5'\n_____________|_____________________|\n_____________22____________________4\n |
28 -- 34 |
5 -- 11 |
-20.2475 kcal/mol |
2.73159 kcal/mol |
1.5073 kcal/mol |
13 35@LB@ | |@LB@5'-UUA...CGAUC UGAC AAGAA...ACC-3'@LB@ ACAUCGAAGA GAAGCAG@LB@ |||||:|||| :||||||@LB@ UGUAGUUUCU UUUCGUC@LB@3'-UUU...ACCCC ACCG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -16.01 kcal/mol@LB@Hybridization Energy -20.2475 kcal/mol@LB@Unfolding Energy - mRNA 2.73159 kcal/mol@LB@Unfolding Energy - sRNA 1.5073 kcal/mol@LB@@LB@Position - mRNA 14 -- 34@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 172 |
0.01269 |
0.2504 |
b0571 |
cusR |
-10.48 |
0.230388 |
14 -- 48 |
1 -- 33 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________13___________________________________49\n_____________|____________________________________|\n5'-AGC...GGCCA__________CA__A___UAC__________UA___UCAUA...GGC-3'\n______________CACAAAAUGG__GA_GUU___AAGGAGA_CA__GGC\n______________||||||||||__||_:|:___|||:|:|_||__|||\n______________GUGUUUUACC__CU_UAG___UUCUUUU_GU__CCG\n3'-UUU...CCGAG__________C___G___U_________C__CA___-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
35 -- 41 |
9 -- 15 |
-22.821 kcal/mol |
9.26274 kcal/mol |
3.07861 kcal/mol |
13 49@LB@ | |@LB@5'-AGC...GGCCA CA A UAC UA UCAUA...GGC-3'@LB@ CACAAAAUGG GA GUU AAGGAGA CA GGC@LB@ |||||||||| || :|: |||:|:| || |||@LB@ GUGUUUUACC CU UAG UUCUUUU GU CCG@LB@3'-UUU...CCGAG C G U C CA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -22.821 kcal/mol@LB@Unfolding Energy - mRNA 9.26274 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 14 -- 48@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 67 |
0.003548 |
0.1858 |
b4412 |
hokC |
-18.22 |
0.003564 |
16 -- 36 |
7 -- 32 |
toxic membrane protein small |
b1562 b0018 |
_____________15_________________________37\n_____________|__________________________|\n5'-AUU...AUAAA__________________________GAUAU...ACA-3'\n______________ACAAAAUGGG____UUAAAGAGA_GC\n______________||||||||||____|:|||||:|_||\n______________UGUUUUACCC____AGUUUCUUU_CG\n3'-UUU...CGAGG__________CUGU_________U__UCACCG-5'\n_____________|__________________________|\n_____________33_________________________6\n |
28 -- 34 |
10 -- 16 |
-22.2189 kcal/mol |
1.46836 kcal/mol |
2.53437 kcal/mol |
15 37@LB@ | |@LB@5'-AUU...AUAAA GAUAU...ACA-3'@LB@ ACAAAAUGGG UUAAAGAGA GC@LB@ |||||||||| |:|||||:| ||@LB@ UGUUUUACCC AGUUUCUUU CG@LB@3'-UUU...CGAGG CUGU U UCACCG-5'@LB@ | |@LB@ 33 6@LB@@LB@@LB@Energy -18.22 kcal/mol@LB@Hybridization Energy -22.2189 kcal/mol@LB@Unfolding Energy - mRNA 1.46836 kcal/mol@LB@Unfolding Energy - sRNA 2.53437 kcal/mol@LB@@LB@Position - mRNA 16 -- 36@LB@Position - sRNA 7 -- 32@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 159 |
0.01174 |
0.2504 |
b3886 |
yihY |
-12.46 |
0.100688 |
17 -- 39 |
6 -- 26 |
BrkB family putative transporter inner membrane protein |
|
_____________16______________________40\n_____________|_______________________|\n5'-UAU...AGAUC________CG____CCU______CGAAU...CAA-3'\n______________UGGGGAUG__CAAA___GAAGCA\n______________||||||::__||||___:|||||\n______________ACCCCUGU__GUUU___UUUCGU\n3'-UUU...GUUUU________A_____CU_______CACCG-5'\n_____________|_______________________|\n_____________27______________________5\n |
18 -- 24 |
19 -- 25 |
-18.1196 kcal/mol |
4.95346 kcal/mol |
0.706421 kcal/mol |
16 40@LB@ | |@LB@5'-UAU...AGAUC CG CCU CGAAU...CAA-3'@LB@ UGGGGAUG CAAA GAAGCA@LB@ ||||||:: |||| :|||||@LB@ ACCCCUGU GUUU UUUCGU@LB@3'-UUU...GUUUU A CU CACCG-5'@LB@ | |@LB@ 27 5@LB@@LB@@LB@Energy -12.46 kcal/mol@LB@Hybridization Energy -18.1196 kcal/mol@LB@Unfolding Energy - mRNA 4.95346 kcal/mol@LB@Unfolding Energy - sRNA 0.706421 kcal/mol@LB@@LB@Position - mRNA 17 -- 39@LB@Position - sRNA 6 -- 26@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 19 -- 25@LB@ |
