120 |
0.00842 |
0.2462 |
b1068 |
yceM |
-12.88 |
0.082928 |
190 -- 205 |
9 -- 24 |
putative oxidoreductase |
|
_____________189______________206\n_____________|________________|\n5'-GCG...CAUCU____G_______U___AAAAU...GAG-3'\n______________GGGA_AUUAAAG_GAA\n______________||||_||:||||_:||\n______________CCCU_UAGUUUC_UUU\n3'-UUU...UUUAC____G_______U___CGUCACCG-5'\n_____________|________________|\n_____________25_______________8\n |
195 -- 201 |
13 -- 19 |
-15.5519 kcal/mol |
2.0153 kcal/mol |
0.659805 kcal/mol |
189 206@LB@ | |@LB@5'-GCG...CAUCU G U AAAAU...GAG-3'@LB@ GGGA AUUAAAG GAA@LB@ |||| ||:|||| :||@LB@ CCCU UAGUUUC UUU@LB@3'-UUU...UUUAC G U CGUCACCG-5'@LB@ | |@LB@ 25 8@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -15.5519 kcal/mol@LB@Unfolding Energy - mRNA 2.0153 kcal/mol@LB@Unfolding Energy - sRNA 0.659805 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 9 -- 24@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 13 -- 19@LB@ |
100 |
0.006296 |
0.2188 |
b1321 |
ycjX |
-13.69 |
0.055797 |
38 -- 45 |
18 -- 25 |
DUF463 family protein puatative P-loop NTPase |
|
_____________37_______46\n_____________|________|\n5'-UGA...UAGUA________AGGUC...CAG-3'\n______________GGGGACAU\n______________||||||||\n______________CCCCUGUA\n3'-UUU...UUUUA________GUUUC...CCG-5'\n_____________|________|\n_____________26_______17\n |
39 -- 45 |
18 -- 24 |
-15.5505 kcal/mol |
1.21152 kcal/mol |
0.65218 kcal/mol |
37 46@LB@ | |@LB@5'-UGA...UAGUA AGGUC...CAG-3'@LB@ GGGGACAU@LB@ ||||||||@LB@ CCCCUGUA@LB@3'-UUU...UUUUA GUUUC...CCG-5'@LB@ | |@LB@ 26 17@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -15.5505 kcal/mol@LB@Unfolding Energy - mRNA 1.21152 kcal/mol@LB@Unfolding Energy - sRNA 0.65218 kcal/mol@LB@@LB@Position - mRNA 38 -- 45@LB@Position - sRNA 18 -- 25@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 18 -- 24@LB@ |
104 |
0.006761 |
0.2281 |
b1671 |
ydhX |
-13.25 |
0.069212 |
145 -- 167 |
2 -- 25 |
putative 4Fe-4S ferridoxin-type protein; FNR Nar NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
b4072 |
_____________144_______________________168\n_____________|_________________________|\n5'-CAC...UUUCA___A_______U___U_________ACAGU...AGG-3'\n______________GGG_GAUGUCA_GGA__AG_GGUGG\n______________|||_||::|||_:||__||_:||||\n______________CCC_CUGUAGU_UCU__UC_UCACC\n3'-UUU...UUUUA___________U___UU__G_____G-5'\n_____________|_________________________|\n_____________26________________________1\n |
149 -- 155 |
16 -- 22 |
-23.0825 kcal/mol |
7.31216 kcal/mol |
2.51746 kcal/mol |
144 168@LB@ | |@LB@5'-CAC...UUUCA A U U ACAGU...AGG-3'@LB@ GGG GAUGUCA GGA AG GGUGG@LB@ ||| ||::||| :|| || :||||@LB@ CCC CUGUAGU UCU UC UCACC@LB@3'-UUU...UUUUA U UU G G-5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -23.0825 kcal/mol@LB@Unfolding Energy - mRNA 7.31216 kcal/mol@LB@Unfolding Energy - sRNA 2.51746 kcal/mol@LB@@LB@Position - mRNA 145 -- 167@LB@Position - sRNA 2 -- 25@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 16 -- 22@LB@ |
75 |
0.00423 |
0.1979 |
b1917 |
yecC |
-10.99 |
0.188691 |
288 -- 298 |
1 -- 11 |
putative ABC transporter ATPase |
|
_____________287_________299\n_____________|___________|\n5'-CUG...CUGGC___________AA-3'\n______________GAAGUGGUGGC\n______________:|||::|||||\n______________UUUCGUCACCG\n3'-UUU...UUUCU___________-5'\n_____________|__________|\n_____________12_________1\n |
292 -- 298 |
1 -- 7 |
-16.6045 kcal/mol |
4.33348 kcal/mol |
1.27751 kcal/mol |
287 299@LB@ | |@LB@5'-CUG...CUGGC AA-3'@LB@ GAAGUGGUGGC@LB@ :|||::|||||@LB@ UUUCGUCACCG@LB@3'-UUU...UUUCU -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -16.6045 kcal/mol@LB@Unfolding Energy - mRNA 4.33348 kcal/mol@LB@Unfolding Energy - sRNA 1.27751 kcal/mol@LB@@LB@Position - mRNA 288 -- 298@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 1 -- 7@LB@ |
92 |
0.005693 |
0.2147 |
b2099 |
yegU |
-12.49 |
0.099484 |
183 -- 197 |
7 -- 22 |
ADP-ribosylglycohydrolase family protein |
|
_____________182______________198\n_____________|________________|\n5'-GUG...GCGUU________________UAAAU...CAC-3'\n______________GACA_CAAGGGGAAGU\n______________||||_|||:|::|||:\n______________CUGU_GUUUCUUUUCG\n3'-UUU...UACCC____A___________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
191 -- 197 |
7 -- 13 |
-15.6094 kcal/mol |
2.53245 kcal/mol |
0.590875 kcal/mol |
182 198@LB@ | |@LB@5'-GUG...GCGUU UAAAU...CAC-3'@LB@ GACA CAAGGGGAAGU@LB@ |||| |||:|::|||:@LB@ CUGU GUUUCUUUUCG@LB@3'-UUU...UACCC A UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -15.6094 kcal/mol@LB@Unfolding Energy - mRNA 2.53245 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
182 |
0.01317 |
0.2504 |
b2101 |
yegW |
-15.40 |
0.022099 |
126 -- 162 |
3 -- 28 |
putative DNA-binding transcriptional regulator |
|
_____________125______________________________________163\n_____________|________________________________________|\n5'-CGG...UCGUU_________________AACGCCUUAAAUAA_________AUAUA...AAA-3'\n______________GAUGGG___AUUAAAGA______________GAAGCAGUG\n______________:|||||___||:|||||______________:||||||||\n______________UUACCC___UAGUUUCU______________UUUCGUCAC\n3'-UUU...GUGUU______CUG_______________________________CG-5'\n_____________|________________________________________|\n_____________29_______________________________________2\n |
156 -- 162 |
3 -- 9 |
-24.3736 kcal/mol |
6.45453 kcal/mol |
2.51813 kcal/mol |
125 163@LB@ | |@LB@5'-CGG...UCGUU AACGCCUUAAAUAA AUAUA...AAA-3'@LB@ GAUGGG AUUAAAGA GAAGCAGUG@LB@ :||||| ||:||||| :||||||||@LB@ UUACCC UAGUUUCU UUUCGUCAC@LB@3'-UUU...GUGUU CUG CG-5'@LB@ | |@LB@ 29 2@LB@@LB@@LB@Energy -15.40 kcal/mol@LB@Hybridization Energy -24.3736 kcal/mol@LB@Unfolding Energy - mRNA 6.45453 kcal/mol@LB@Unfolding Energy - sRNA 2.51813 kcal/mol@LB@@LB@Position - mRNA 126 -- 162@LB@Position - sRNA 3 -- 28@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 3 -- 9@LB@ |
197 |
0.0142 |
0.2529 |
b2295 |
yfbV |
-14.79 |
0.031139 |
250 -- 276 |
1 -- 25 |
UPF0208 family inner membrane protein |
|
_____________249_________________________277\n_____________|___________________________|\n5'-AUG...UCGCC_______G__UUACUC____AC_____CGCUG...CGG-3'\n______________GGGGACA_CA______AAAG__GUGGC\n______________|||||||_||______||||__|||||\n______________CCCCUGU_GU______UUUC__CACCG\n3'-UUU...UUUUA_______A__UUCU______GU_____-5'\n_____________|__________________________|\n_____________26_________________________1\n |
250 -- 256 |
19 -- 25 |
-25.4481 kcal/mol |
8.13822 kcal/mol |
2.51748 kcal/mol |
249 277@LB@ | |@LB@5'-AUG...UCGCC G UUACUC AC CGCUG...CGG-3'@LB@ GGGGACA CA AAAG GUGGC@LB@ ||||||| || |||| |||||@LB@ CCCCUGU GU UUUC CACCG@LB@3'-UUU...UUUUA A UUCU GU -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.79 kcal/mol@LB@Hybridization Energy -25.4481 kcal/mol@LB@Unfolding Energy - mRNA 8.13822 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 250 -- 276@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 19 -- 25@LB@ |
71 |
0.003993 |
0.1953 |
b2347 |
yfdC |
-11.68 |
0.141997 |
251 -- 269 |
1 -- 17 |
putative inner membrane protein |
|
_____________250__________________270\n_____________|____________________|\n5'-GCA...GAGAG_______AAA______C___AAAAA...UCC-3'\n______________CGAAGAA___GAGC_G_GGC\n______________|:|||||___:|||_|_|||\n______________GUUUCUU___UUCG_C_CCG\n3'-UUU...CUGUA______________U_A___-5'\n_____________|___________________|\n_____________18__________________1\n |
251 -- 257 |
11 -- 17 |
-16.1242 kcal/mol |
3.00377 kcal/mol |
1.43853 kcal/mol |
250 270@LB@ | |@LB@5'-GCA...GAGAG AAA C AAAAA...UCC-3'@LB@ CGAAGAA GAGC G GGC@LB@ |:||||| :||| | |||@LB@ GUUUCUU UUCG C CCG@LB@3'-UUU...CUGUA U A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -16.1242 kcal/mol@LB@Unfolding Energy - mRNA 3.00377 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 251 -- 269@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 11 -- 17@LB@ |
84 |
0.005241 |
0.2147 |
b2513 |
yfgM |
-12.13 |
0.116945 |
176 -- 204 |
2 -- 26 |
ancillary SecYEG translocon subunit; putative anti-RcsB factor |
|
_____________175___________________________205\n_____________|_____________________________|\n5'-GGC...GUUAC____UUAAGG_________G_CAGC____AAAUU...UUG-3'\n______________UGGG______AAGGAGAAG_A____GUGG\n______________||||______||:||:|||_|____||||\n______________ACCC______UUUCUUUUC_U____CACC\n3'-UUU...GUUUU____CUGUAG_________G_________G-5'\n_____________|_____________________________|\n_____________27____________________________1\n |
188 -- 194 |
8 -- 14 |
-19.1762 kcal/mol |
4.53021 kcal/mol |
2.5184 kcal/mol |
175 205@LB@ | |@LB@5'-GGC...GUUAC UUAAGG G CAGC AAAUU...UUG-3'@LB@ UGGG AAGGAGAAG A GUGG@LB@ |||| ||:||:||| | ||||@LB@ ACCC UUUCUUUUC U CACC@LB@3'-UUU...GUUUU CUGUAG G G-5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -19.1762 kcal/mol@LB@Unfolding Energy - mRNA 4.53021 kcal/mol@LB@Unfolding Energy - sRNA 2.5184 kcal/mol@LB@@LB@Position - mRNA 176 -- 204@LB@Position - sRNA 2 -- 26@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 8 -- 14@LB@ |
85 |
0.0054 |
0.2147 |
b4461 |
yfjD |
-16.56 |
0.010978 |
60 -- 89 |
2 -- 27 |
UPF0053 family inner membrane protein |
|
_____________59______________________________90\n_____________|_______________________________|\n5'-GAA...CUGCU___________AUCAU______U________ACGCC...UCA-3'\n______________GUGGGGACAUU_____GAAGGA_GGC_GUGG\n______________:|||||||||:_____:|||:|_:||_||||\n______________UACCCCUGUAG_____UUUCUU_UCG_CACC\n3'-UUU...UGUUU______________________U___U____G-5'\n_____________|_______________________________|\n_____________28______________________________1\n |
64 -- 70 |
17 -- 23 |
-31.7913 kcal/mol |
12.7137 kcal/mol |
2.51866 kcal/mol |
59 90@LB@ | |@LB@5'-GAA...CUGCU AUCAU U ACGCC...UCA-3'@LB@ GUGGGGACAUU GAAGGA GGC GUGG@LB@ :|||||||||: :|||:| :|| ||||@LB@ UACCCCUGUAG UUUCUU UCG CACC@LB@3'-UUU...UGUUU U U G-5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -31.7913 kcal/mol@LB@Unfolding Energy - mRNA 12.7137 kcal/mol@LB@Unfolding Energy - sRNA 2.51866 kcal/mol@LB@@LB@Position - mRNA 60 -- 89@LB@Position - sRNA 2 -- 27@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 17 -- 23@LB@ |