17 |
0.0006839 |
0.1243 |
b1247 |
oppF |
-10.96 |
0.191014 |
264 -- 288 |
1 -- 22 |
oligopeptide ABC transporter ATPase |
|
_____________263________________________289\n_____________|__________________________|\n5'-GCG...ACUUU__A________U____AAAC______UCUGG...CGC-3'\n______________GA_AUCAAAGA__GGC____AGUGGU\n______________||_||||||||__:||____|||||:\n______________CU_UAGUUUCU__UCG____UCACCG\n3'-UUU...UACCC__G________UU_____________-5'\n_____________|_________________________|\n_____________23________________________1\n |
268 -- 274 |
12 -- 18 |
-19.2479 kcal/mol |
6.74487 kcal/mol |
1.54023 kcal/mol |
263 289@LB@ | |@LB@5'-GCG...ACUUU A U AAAC UCUGG...CGC-3'@LB@ GA AUCAAAGA GGC AGUGGU@LB@ || |||||||| :|| |||||:@LB@ CU UAGUUUCU UCG UCACCG@LB@3'-UUU...UACCC G UU -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -19.2479 kcal/mol@LB@Unfolding Energy - mRNA 6.74487 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 264 -- 288@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 12 -- 18@LB@ |
163 |
0.01202 |
0.2504 |
b1482 |
osmC |
-10.53 |
0.225653 |
203 -- 226 |
1 -- 22 |
lipoyl-dependent Cys-based peroxidase hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin |
|
_____________202_______________________227\n_____________|_________________________|\n5'-UAG...ACAAU___A___CAU_________CA____ACACU...CGU-3'\n______________GAC_AUC___AAGAAAGGU___GGC\n______________|||_|||___||||||:|:___|||\n______________CUG_UAG___UUCUUUUCG___CCG\n3'-UUU...UACCC_______U___________UCA___-5'\n_____________|________________________|\n_____________23_______________________1\n |
215 -- 221 |
7 -- 13 |
-17.1921 kcal/mol |
5.11752 kcal/mol |
1.54023 kcal/mol |
202 227@LB@ | |@LB@5'-UAG...ACAAU A CAU CA ACACU...CGU-3'@LB@ GAC AUC AAGAAAGGU GGC@LB@ ||| ||| ||||||:|: |||@LB@ CUG UAG UUCUUUUCG CCG@LB@3'-UUU...UACCC U UCA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -17.1921 kcal/mol@LB@Unfolding Energy - mRNA 5.11752 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 7 -- 13@LB@ |
135 |
0.009724 |
0.2504 |
b1387 |
paaZ |
-12.57 |
0.095542 |
174 -- 198 |
5 -- 30 |
oxepin-CoA hydrolase and 3-oxo-5 6-dehydrosuberyl-CoA semialdehyde dehydrogenase |
|
_____________173_________________________199\n_____________|___________________________|\n5'-UAA...CAACA______U_AA_____U___________CGAUG...AAG-3'\n______________GAAAUG_G__ACAUC___GGAGAGUAG\n______________:|||||_|__|||||___|:|:||:||\n______________UUUUAC_C__UGUAG___CUUUUCGUC\n3'-UUU...AGGUG________CC_____UUU_________ACCG-5'\n_____________|___________________________|\n_____________31__________________________4\n |
192 -- 198 |
5 -- 11 |
-19.0129 kcal/mol |
3.93627 kcal/mol |
2.50278 kcal/mol |
173 199@LB@ | |@LB@5'-UAA...CAACA U AA U CGAUG...AAG-3'@LB@ GAAAUG G ACAUC GGAGAGUAG@LB@ :||||| | ||||| |:|:||:||@LB@ UUUUAC C UGUAG CUUUUCGUC@LB@3'-UUU...AGGUG CC UUU ACCG-5'@LB@ | |@LB@ 31 4@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -19.0129 kcal/mol@LB@Unfolding Energy - mRNA 3.93627 kcal/mol@LB@Unfolding Energy - sRNA 2.50278 kcal/mol@LB@@LB@Position - mRNA 174 -- 198@LB@Position - sRNA 5 -- 30@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
54 |
0.00267 |
0.1735 |
b0131 |
panD |
-12.96 |
0.079905 |
178 -- 195 |
5 -- 22 |
aspartate 1-decarboxylase |
|
_____________177________________196\n_____________|__________________|\n5'-AUU...UUAAC____GGGU__________AAGUU...UUG-3'\n______________GACA____AGAAAGGUAG\n______________||||____|||||:|:||\n______________CUGU____UCUUUUCGUC\n3'-UUU...UACCC____AGUU__________ACCG-5'\n_____________|__________________|\n_____________23_________________4\n |
189 -- 195 |
5 -- 11 |
-16.4376 kcal/mol |
1.9462 kcal/mol |
1.53637 kcal/mol |
177 196@LB@ | |@LB@5'-AUU...UUAAC GGGU AAGUU...UUG-3'@LB@ GACA AGAAAGGUAG@LB@ |||| |||||:|:||@LB@ CUGU UCUUUUCGUC@LB@3'-UUU...UACCC AGUU ACCG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -16.4376 kcal/mol@LB@Unfolding Energy - mRNA 1.9462 kcal/mol@LB@Unfolding Energy - sRNA 1.53637 kcal/mol@LB@@LB@Position - mRNA 178 -- 195@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 5 -- 11@LB@ |
134 |
0.009704 |
0.2504 |
b1444 |
patD |
-10.55 |
0.224369 |
279 -- 297 |
10 -- 25 |
gamma-aminobutyraldehyde dehydrogenase |
|
_____________278_________________298\n_____________|___________________|\n5'-UCG...CAACG_________UUACU_____UUG-3'\n______________GGGGACGUU_____GGAAA\n______________||||||:|:_____:||||\n______________CCCCUGUAG_____UCUUU\n3'-UUU...UUUUA_________UU________UCGUC...CCG-5'\n_____________|___________________|\n_____________26__________________9\n |
281 -- 287 |
17 -- 23 |
-18.1658 kcal/mol |
6.94606 kcal/mol |
0.670388 kcal/mol |
278 298@LB@ | |@LB@5'-UCG...CAACG UUACU UUG-3'@LB@ GGGGACGUU GGAAA@LB@ ||||||:|: :||||@LB@ CCCCUGUAG UCUUU@LB@3'-UUU...UUUUA UU UCGUC...CCG-5'@LB@ | |@LB@ 26 9@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -18.1658 kcal/mol@LB@Unfolding Energy - mRNA 6.94606 kcal/mol@LB@Unfolding Energy - sRNA 0.670388 kcal/mol@LB@@LB@Position - mRNA 279 -- 297@LB@Position - sRNA 10 -- 25@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 17 -- 23@LB@ |
151 |
0.01116 |
0.2504 |
b0903 |
pflB |
-10.70 |
0.211701 |
140 -- 166 |
4 -- 34 |
formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1 |
|
_____________139_____________________________167\n_____________|_______________________________|\n5'-CAC...GACCA____U______U__________UAC______AAAUA...ACU-3'\n______________CCAU__AAUGG___UGUCGAAG____GCAGU\n______________|||:__|||||___::||:|||____|||||\n______________GGUG__UUACC___GUAGUUUC____CGUCA\n3'-UUU...CCCGA____UU_____CCU________UUUU_____CCG-5'\n_____________|_______________________________|\n_____________35______________________________3\n |
152 -- 158 |
13 -- 19 |
-21.5315 kcal/mol |
6.56187 kcal/mol |
4.26884 kcal/mol |
139 167@LB@ | |@LB@5'-CAC...GACCA U U UAC AAAUA...ACU-3'@LB@ CCAU AAUGG UGUCGAAG GCAGU@LB@ |||: ||||| ::||:||| |||||@LB@ GGUG UUACC GUAGUUUC CGUCA@LB@3'-UUU...CCCGA UU CCU UUUU CCG-5'@LB@ | |@LB@ 35 3@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -21.5315 kcal/mol@LB@Unfolding Energy - mRNA 6.56187 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 140 -- 166@LB@Position - sRNA 4 -- 34@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 13 -- 19@LB@ |
10 |
0.0003274 |
0.1087 |
b1020 |
phoH |
-9.93 |
0.281763 |
74 -- 85 |
48 -- 59 |
ATP-binding protein; putative PhoH family P-loop ATPase |
|
_____________73___________86\n_____________|____________|\n5'-AAU...AUGUC____________UUUUA...AAC-3'\n______________ACUGAAAUGGUG\n______________||:|||||||:|\n______________UGGCUUUACCGC\n3'-UUU...GAACU____________CCCAA...CCG-5'\n_____________|____________|\n_____________60___________47\n |
79 -- 85 |
48 -- 54 |
-17.134 kcal/mol |
3.24305 kcal/mol |
3.96136 kcal/mol |
73 86@LB@ | |@LB@5'-AAU...AUGUC UUUUA...AAC-3'@LB@ ACUGAAAUGGUG@LB@ ||:|||||||:|@LB@ UGGCUUUACCGC@LB@3'-UUU...GAACU CCCAA...CCG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -17.134 kcal/mol@LB@Unfolding Energy - mRNA 3.24305 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 74 -- 85@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 48 -- 54@LB@ |
5 |
2.356e-05 |
0.01653 |
b1123 |
potD |
-19.53 |
0.001282 |
190 -- 207 |
9 -- 25 |
spermidine/putrescine ABC transporter periplasmic binding protein |
|
_____________189________________208\n_____________|__________________|\n5'-GAC...ACACA____________U_____AAUGG...ACU-3'\n______________GGGGACGUUAAA_GAAAA\n______________||||||:|:|||_|||||\n______________CCCCUGUAGUUU_CUUUU\n3'-UUU...UUUUA__________________CGUCACCG-5'\n_____________|__________________|\n_____________26_________________8\n |
195 -- 201 |
14 -- 20 |
-22.5319 kcal/mol |
2.32696 kcal/mol |
0.671024 kcal/mol |
189 208@LB@ | |@LB@5'-GAC...ACACA U AAUGG...ACU-3'@LB@ GGGGACGUUAAA GAAAA@LB@ ||||||:|:||| |||||@LB@ CCCCUGUAGUUU CUUUU@LB@3'-UUU...UUUUA CGUCACCG-5'@LB@ | |@LB@ 26 8@LB@@LB@@LB@Energy -19.53 kcal/mol@LB@Hybridization Energy -22.5319 kcal/mol@LB@Unfolding Energy - mRNA 2.32696 kcal/mol@LB@Unfolding Energy - sRNA 0.671024 kcal/mol@LB@@LB@Position - mRNA 190 -- 207@LB@Position - sRNA 9 -- 25@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 14 -- 20@LB@ |
91 |
0.005641 |
0.2147 |
b3956 |
ppc |
-14.82 |
0.030673 |
242 -- 282 |
2 -- 37 |
phosphoenolpyruvate carboxylase |
|
_____________241_________________________________________283\n_____________|___________________________________________|\n5'-CUU...AGUAU____G________CU____GAAAC_________U_____U___GAGAA...AAC-3'\n______________GCUC_GCAAAGUG__GGGA_____CAUCAAGGA___GCG_UGG\n______________||||_:||||:||__||||_____||||||:||___||:_|||\n______________CGAG_UGUUUUAC__CCCU_____GUAGUUUCU___CGU_ACC\n3'-UUU...CUACC____G____________________________UUU___C___G-5'\n_____________|___________________________________________|\n_____________38__________________________________________1\n |
268 -- 274 |
12 -- 18 |
-37.6415 kcal/mol |
13.2441 kcal/mol |
9.57751 kcal/mol |
241 283@LB@ | |@LB@5'-CUU...AGUAU G CU GAAAC U U GAGAA...AAC-3'@LB@ GCUC GCAAAGUG GGGA CAUCAAGGA GCG UGG@LB@ |||| :||||:|| |||| ||||||:|| ||: |||@LB@ CGAG UGUUUUAC CCCU GUAGUUUCU CGU ACC@LB@3'-UUU...CUACC G UUU C G-5'@LB@ | |@LB@ 38 1@LB@@LB@@LB@Energy -14.82 kcal/mol@LB@Hybridization Energy -37.6415 kcal/mol@LB@Unfolding Energy - mRNA 13.2441 kcal/mol@LB@Unfolding Energy - sRNA 9.57751 kcal/mol@LB@@LB@Position - mRNA 242 -- 282@LB@Position - sRNA 2 -- 37@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 12 -- 18@LB@ |
194 |
0.01408 |
0.2529 |
b0952 |
pqiC |
-11.52 |
0.151794 |
181 -- 195 |
48 -- 61 |
DUF330 family putative lipoprotein |
|
_____________180_____________196\n_____________|_______________|\n5'-ACG...AUCCA_________AG____AAACA...GCG-3'\n______________GAGCCGAAG__GGCG\n______________||:|||||:__||||\n______________CUUGGCUUU__CCGC\n3'-UUU...UGGAA_________A_____CCCAA...CCG-5'\n_____________|_______________|\n_____________62______________47\n |
183 -- 189 |
53 -- 59 |
-21.1549 kcal/mol |
5.66908 kcal/mol |
3.96136 kcal/mol |
180 196@LB@ | |@LB@5'-ACG...AUCCA AG AAACA...GCG-3'@LB@ GAGCCGAAG GGCG@LB@ ||:|||||: ||||@LB@ CUUGGCUUU CCGC@LB@3'-UUU...UGGAA A CCCAA...CCG-5'@LB@ | |@LB@ 62 47@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -21.1549 kcal/mol@LB@Unfolding Energy - mRNA 5.66908 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 181 -- 195@LB@Position - sRNA 48 -- 61@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 53 -- 59@LB@ |