| 1 |
2.411e-07 |
0.0007914 |
b0889 |
lrp |
-21.69 |
0.000065 |
168 -- 212 |
1 -- 64 |
leucine-responsive global transcriptional regulator |
|
_____________167_______________________________________________________________213\n_____________|_________________________________________________________________|\n5'-GUG...AGACA_________AA_______AUA_____________________________________A______AAGAA...AGC-3'\n______________GGAGUAGGG______GGA____CAGAGA_____GAC_______AAUAA___UAAUGGU_GAUAGC\n______________|:|:|||||______:||____||||:|_____|||_______|||||___|||||:|_||||||\n______________CUUUAUCCC______UCU____GUCUUU_____CUG_______UUAUU___AUUACUA_CUAUCG\n3'-UUU...GCCAA_________CAUUUG___GUAA______ACUUA___CCAUUAU_____UCA______________-5'\n_____________|________________________________________________________________|\n_____________65_______________________________________________________________1\n |
199 -- 205 |
7 -- 13 |
-30.6118 kcal/mol |
2.57614 kcal/mol |
6.344 kcal/mol |
167 213@LB@ | |@LB@5'-GUG...AGACA AA AUA A AAGAA...AGC-3'@LB@ GGAGUAGGG GGA CAGAGA GAC AAUAA UAAUGGU GAUAGC@LB@ |:|:||||| :|| ||||:| ||| ||||| |||||:| ||||||@LB@ CUUUAUCCC UCU GUCUUU CUG UUAUU AUUACUA CUAUCG@LB@3'-UUU...GCCAA CAUUUG GUAA ACUUA CCAUUAU UCA -5'@LB@ | |@LB@ 65 1@LB@@LB@@LB@Energy -21.69 kcal/mol@LB@Hybridization Energy -30.6118 kcal/mol@LB@Unfolding Energy - mRNA 2.57614 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 168 -- 212@LB@Position - sRNA 1 -- 64@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 2 |
1.932e-06 |
0.003171 |
b1243 |
oppA |
-16.40 |
0.003005 |
12 -- 82 |
1 -- 59 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________11__________________________________________________________________________83\n_____________|___________________________________________________________________________|\n5'-UGU...UCGAC___________CAGUACGAAUC_____AA__U__UCGUC_____C__CAG____________C____________AAUAC...UCA-3'\n______________AGGGG_AGACA___________GACAU__GG_GA_____UGAAU_AC___AAUAAAUAAAGU____GGUGAUAGU\n______________|||||_|:|||___________|||||__:|_:|_____|||||_||___||||||||||||____|:||||||:\n______________UCCCC_UUUGU___________CUGUA__UC_UU_____ACUUA_UG___UUAUUUAUUUCA____CUACUAUCG\n3'-UUU...CUUUA_____A_____________________AG__U____________C__CCA____________AUUA_________-5'\n_____________|__________________________________________________________________________|\n_____________60_________________________________________________________________________1\n |
76 -- 82 |
1 -- 7 |
-40.1642 kcal/mol |
17.4223 kcal/mol |
6.33764 kcal/mol |
11 83@LB@ | |@LB@5'-UGU...UCGAC CAGUACGAAUC AA U UCGUC C CAG C AAUAC...UCA-3'@LB@ AGGGG AGACA GACAU GG GA UGAAU AC AAUAAAUAAAGU GGUGAUAGU@LB@ ||||| |:||| ||||| :| :| ||||| || |||||||||||| |:||||||:@LB@ UCCCC UUUGU CUGUA UC UU ACUUA UG UUAUUUAUUUCA CUACUAUCG@LB@3'-UUU...CUUUA A AG U C CCA AUUA -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -40.1642 kcal/mol@LB@Unfolding Energy - mRNA 17.4223 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 12 -- 82@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 3 |
3.826e-06 |
0.004187 |
b0090 |
murG |
-16.88 |
0.002220 |
177 -- 235 |
1 -- 51 |
N-acetylglucosaminyl transferase |
|
_____________176_________________________________________________________236\n_____________|___________________________________________________________|\n5'-AUU...AAAGC___________UAC_____UCAC____A_____C___G____CGA______________AGGCG...GUU-3'\n______________GCAGGCGUUUG___GAGGU____GAUG_GUGGU_AAG_AAAG___UUAAUGGUGAUGGC\n______________:|||:|:||::___||::|____||:|_||::|_||:_||||___||||||:||||:||\n______________UGUCUGUAAGU___CUUUA____CUGC_CAUUA_UUU_UUUC___AAUUACUACUAUCG\n3'-UUU...CCAUU___________________CUUA______________A_____________________-5'\n_____________|__________________________________________________________|\n_____________52_________________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-39.4015 kcal/mol |
16.1862 kcal/mol |
6.33528 kcal/mol |
176 236@LB@ | |@LB@5'-AUU...AAAGC UAC UCAC A C G CGA AGGCG...GUU-3'@LB@ GCAGGCGUUUG GAGGU GAUG GUGGU AAG AAAG UUAAUGGUGAUGGC@LB@ :|||:|:||:: ||::| ||:| ||::| ||: |||| ||||||:||||:||@LB@ UGUCUGUAAGU CUUUA CUGC CAUUA UUU UUUC AAUUACUACUAUCG@LB@3'-UUU...CCAUU CUUA A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -16.88 kcal/mol@LB@Hybridization Energy -39.4015 kcal/mol@LB@Unfolding Energy - mRNA 16.1862 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 177 -- 235@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 4 |
6.512e-06 |
0.005344 |
b0929 |
ompF |
-18.50 |
0.000749 |
185 -- 210 |
1 -- 33 |
outer membrane porin 1a (Ia;b;F) |
|
_____________184_______________________________211\n_____________|_________________________________|\n5'-GUU...AAACC____G____________________________GCAAU...UAG-3'\n______________AUGA_GGUAAUAAAUA______AUGAUGA_AGC\n______________||||_|||||||||||______|||||||_|||\n______________UACU_CCAUUAUUUAU______UACUACU_UCG\n3'-UUU...UUACU____G___________UUCAAU_______A___-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
201 -- 207 |
5 -- 11 |
-27.1062 kcal/mol |
3.13427 kcal/mol |
5.47105 kcal/mol |
184 211@LB@ | |@LB@5'-GUU...AAACC G GCAAU...UAG-3'@LB@ AUGA GGUAAUAAAUA AUGAUGA AGC@LB@ |||| ||||||||||| ||||||| |||@LB@ UACU CCAUUAUUUAU UACUACU UCG@LB@3'-UUU...UUACU G UUCAAU A -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -27.1062 kcal/mol@LB@Unfolding Energy - mRNA 3.13427 kcal/mol@LB@Unfolding Energy - sRNA 5.47105 kcal/mol@LB@@LB@Position - mRNA 185 -- 210@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 5 |
3.022e-05 |
0.01984 |
b4553 |
ysaB |
-16.91 |
0.002179 |
166 -- 209 |
3 -- 54 |
uncharacterized protein |
|
_____________165__________________________________________________210\n_____________|____________________________________________________|\n5'-UCA...AUAAA___UA____UCACCUGCAAACCA_____________________________AACGC...AUC-3'\n______________UAA__AGAC______________GACGGUAAU________UUAAUGAUGAUG\n______________|||__||||______________|||||||||________|||||||||||:\n______________AUU__UCUG______________CUGCCAUUA________AAUUACUACUAU\n3'-UUU...UCCCC___UG____UAAGUCUUUACUUA_________UUUAUUUC____________CG-5'\n_____________|____________________________________________________|\n_____________55___________________________________________________2\n |
203 -- 209 |
3 -- 9 |
-28.2861 kcal/mol |
5.03949 kcal/mol |
6.3375 kcal/mol |
165 210@LB@ | |@LB@5'-UCA...AUAAA UA UCACCUGCAAACCA AACGC...AUC-3'@LB@ UAA AGAC GACGGUAAU UUAAUGAUGAUG@LB@ ||| |||| ||||||||| |||||||||||:@LB@ AUU UCUG CUGCCAUUA AAUUACUACUAU@LB@3'-UUU...UCCCC UG UAAGUCUUUACUUA UUUAUUUC CG-5'@LB@ | |@LB@ 55 2@LB@@LB@@LB@Energy -16.91 kcal/mol@LB@Hybridization Energy -28.2861 kcal/mol@LB@Unfolding Energy - mRNA 5.03949 kcal/mol@LB@Unfolding Energy - sRNA 6.3375 kcal/mol@LB@@LB@Position - mRNA 166 -- 209@LB@Position - sRNA 3 -- 54@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 6 |
0.0001423 |
0.07172 |
b3183 |
obgE |
-17.58 |
0.001399 |
174 -- 220 |
1 -- 51 |
GTPase involved in cell partioning and DNA repair |
|
_____________173____________________________________________________221\n_____________|______________________________________________________|\n5'-UUU...CCCGC__________________UUU____AG___A__________UGU__________AUCGA...GCC-3'\n______________GCAGGC______GAAUGA___ACGG__AAU_AAAUGAAGUU___UGAUGA_AGC\n______________:|||:|______:|||||___||||__|||_||||:|||||___||||||_|||\n______________UGUCUG______UUUACU___UGCC__UUA_UUUAUUUCAA___ACUACU_UCG\n3'-UUU...CCAUU______UAAGUC______UAC____A_______________UU_______A___-5'\n_____________|_____________________________________________________|\n_____________52____________________________________________________1\n |
202 -- 208 |
13 -- 19 |
-33.7182 kcal/mol |
9.79823 kcal/mol |
6.33528 kcal/mol |
173 221@LB@ | |@LB@5'-UUU...CCCGC UUU AG A UGU AUCGA...GCC-3'@LB@ GCAGGC GAAUGA ACGG AAU AAAUGAAGUU UGAUGA AGC@LB@ :|||:| :||||| |||| ||| ||||:||||| |||||| |||@LB@ UGUCUG UUUACU UGCC UUA UUUAUUUCAA ACUACU UCG@LB@3'-UUU...CCAUU UAAGUC UAC A UU A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -17.58 kcal/mol@LB@Hybridization Energy -33.7182 kcal/mol@LB@Unfolding Energy - mRNA 9.79823 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 174 -- 220@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 7 |
0.0001529 |
0.07172 |
b0687 |
seqA |
-15.48 |
0.005290 |
212 -- 226 |
5 -- 19 |
negative modulator of initiation of replication |
|
_____________211_____________227\n_____________|_______________|\n5'-GGA...ACGAU_______________ACUCU...UGA-3'\n______________UGAAGUUGAUGAUGA\n______________|:|||||:|||||||\n______________AUUUCAAUUACUACU\n3'-UUU...UAUUU_______________AUCG-5'\n_____________|_______________|\n_____________20______________4\n |
220 -- 226 |
5 -- 11 |
-18.3215 kcal/mol |
2.77487 kcal/mol |
0.0620344 kcal/mol |
211 227@LB@ | |@LB@5'-GGA...ACGAU ACUCU...UGA-3'@LB@ UGAAGUUGAUGAUGA@LB@ |:|||||:|||||||@LB@ AUUUCAAUUACUACU@LB@3'-UUU...UAUUU AUCG-5'@LB@ | |@LB@ 20 4@LB@@LB@@LB@Energy -15.48 kcal/mol@LB@Hybridization Energy -18.3215 kcal/mol@LB@Unfolding Energy - mRNA 2.77487 kcal/mol@LB@Unfolding Energy - sRNA 0.0620344 kcal/mol@LB@@LB@Position - mRNA 212 -- 226@LB@Position - sRNA 5 -- 19@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 8 |
0.0001978 |
0.08119 |
b3391 |
hofQ |
-22.13 |
0.000045 |
16 -- 73 |
27 -- 88 |
DNA catabolic putative fimbrial transporter |
|
_____________15________________________________________________________________74\n_____________|_________________________________________________________________|\n5'-CUA...AUGGU___G__________C_____AU____GU_____AA____________AA_________C______GUGCA...UAG-3'\n______________AGG_CGAG_GCGAG_GCAUC__CGGU___AAUA_____AGACGGGCA___AGAAAUGG__GACGG\n______________|::_|||:_|||||_|||||__||||___||||_____|:||:|:||___|||||||:__|||||\n______________UUU_GCUU_CGCUC_CGUAG__GCCA___UUAU_____UUUGUCUGU___UCUUUACU__CUGCC\n______3'-UUUUU___G____A_________________ACU____CCCCA_________AAG________UA_____AUUAU...UCG-5'\n_____________|_________________________________________________________________|\n_____________89________________________________________________________________26\n |
60 -- 66 |
35 -- 41 |
-51.8767 kcal/mol |
10.3742 kcal/mol |
19.3742 kcal/mol |
15 74@LB@ | |@LB@5'-CUA...AUGGU G C AU GU AA AA C GUGCA...UAG-3'@LB@ AGG CGAG GCGAG GCAUC CGGU AAUA AGACGGGCA AGAAAUGG GACGG@LB@ |:: |||: ||||| ||||| |||| |||| |:||:|:|| |||||||: |||||@LB@ UUU GCUU CGCUC CGUAG GCCA UUAU UUUGUCUGU UCUUUACU CUGCC@LB@ 3'-UUUUU G A ACU CCCCA AAG UA AUUAU...UCG-5'@LB@ | |@LB@ 89 26@LB@@LB@@LB@Energy -22.13 kcal/mol@LB@Hybridization Energy -51.8767 kcal/mol@LB@Unfolding Energy - mRNA 10.3742 kcal/mol@LB@Unfolding Energy - sRNA 19.3742 kcal/mol@LB@@LB@Position - mRNA 16 -- 73@LB@Position - sRNA 27 -- 88@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 9 |
0.000223 |
0.08136 |
b1826 |
mgrB |
-16.34 |
0.003128 |
178 -- 244 |
1 -- 63 |
regulatory peptide for PhoPQ feedback inhibition |
|
_____________177______________________________________________________________________245\n_____________|________________________________________________________________________|\n5'-UAC...ACAUA_______U_________G_____________AAAGUUUC_____GUCGUUCU_______UC______U____UUGCU...AAU-3'\n______________AGGUAGG_G_AAACGGA_AUU__GGAGUGAA________GAUGG__________GGUUG__GUGGUG_UGGC\n______________|::||||_|_||||:||_|||__|:|:||||________||:||__________:|||:__:||:||_|:||\n______________UUUAUCC_C_UUUGUCU_UAA__CUUUACUU________CUGCC__________UCAAU__UACUAC_AUCG\n3'-UUU...CCAAC_______C_A_______G___GU________A____________AUUAUUUAUU_____________U____-5'\n_____________|_______________________________________________________________________|\n_____________64______________________________________________________________________1\n |
187 -- 193 |
47 -- 53 |
-38.9165 kcal/mol |
16.2325 kcal/mol |
6.344 kcal/mol |
177 245@LB@ | |@LB@5'-UAC...ACAUA U G AAAGUUUC GUCGUUCU UC U UUGCU...AAU-3'@LB@ AGGUAGG G AAACGGA AUU GGAGUGAA GAUGG GGUUG GUGGUG UGGC@LB@ |::|||| | ||||:|| ||| |:|:|||| ||:|| :|||: :||:|| |:||@LB@ UUUAUCC C UUUGUCU UAA CUUUACUU CUGCC UCAAU UACUAC AUCG@LB@3'-UUU...CCAAC C A G GU A AUUAUUUAUU U -5'@LB@ | |@LB@ 64 1@LB@@LB@@LB@Energy -16.34 kcal/mol@LB@Hybridization Energy -38.9165 kcal/mol@LB@Unfolding Energy - mRNA 16.2325 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 178 -- 244@LB@Position - sRNA 1 -- 63@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 10 |
0.0003219 |
0.1057 |
b2727 |
hypB |
-18.91 |
0.000562 |
181 -- 230 |
1 -- 53 |
GTP hydrolase involved in nickel liganding into hydrogenases |
|
_____________180____________________________________________________231\n_____________|______________________________________________________|\n5'-GCC...GAUAG_____________________C____U___CAAC___C_____C______A___AACCU...CGG-3'\n______________AAAUAGAC___CAGGAGUGAG_GAUG_GUA____AUG_GGUUG__GGUGA_GGC\n______________|||:||||___|||:|:|||:_||:|_|||____||:_:|||:__|:|||_:||\n______________UUUGUCUG___GUCUUUACUU_CUGC_CAU____UAU_UCAAU__CUACU_UCG\n3'-UUU...CCCCA________UAA__________A________UAUU___U_____UA_____A___-5'\n_____________|_____________________________________________________|\n_____________54____________________________________________________1\n |
182 -- 188 |
46 -- 52 |
-37.7845 kcal/mol |
12.539 kcal/mol |
6.33709 kcal/mol |
180 231@LB@ | |@LB@5'-GCC...GAUAG C U CAAC C C A AACCU...CGG-3'@LB@ AAAUAGAC CAGGAGUGAG GAUG GUA AUG GGUUG GGUGA GGC@LB@ |||:|||| |||:|:|||: ||:| ||| ||: :|||: |:||| :||@LB@ UUUGUCUG GUCUUUACUU CUGC CAU UAU UCAAU CUACU UCG@LB@3'-UUU...CCCCA UAA A UAUU U UA A -5'@LB@ | |@LB@ 54 1@LB@@LB@@LB@Energy -18.91 kcal/mol@LB@Hybridization Energy -37.7845 kcal/mol@LB@Unfolding Energy - mRNA 12.539 kcal/mol@LB@Unfolding Energy - sRNA 6.33709 kcal/mol@LB@@LB@Position - mRNA 181 -- 230@LB@Position - sRNA 1 -- 53@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 46 -- 52@LB@ |
