Freiburg RNA Tools
CopraRNA - Results
BIF
IFF
CopraRNA 2626778

Input and runtime details for job 2626778 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 2626778 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:32:22 CET 2014
?Processing Started@ Mon Oct 27 19:32:36 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 22:04:21 CET 2014
?Post-Processing Finished@ Mon Oct 27 22:04:21 CET 2014
?Job Completed@ Mon Oct 27 22:04:31 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=2626778&toolName=CopraRNA ( 30 days expiry )

The job description you specified

MicF

Output download complete results [zip]

Downloadable files

[csv]
[txt]
[txt]
[png] [pdf] [ps]
[png] [pdf] [ps]
[html] [pdf]
[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 1.643e-07 0.0005989 b0889 lrp -22.69 0.000016 157 -- 212 1 -- 59 leucine-responsive global transcriptional regulator   0
2 1.202e-05 0.02191 b0090 murG -14.64 0.007812 191 -- 235 1 -- 48 N-acetylglucosaminyl transferase   0
3 2.157e-05 0.02621 b0929 ompF -17.38 0.001317 185 -- 210 1 -- 33 outer membrane porin 1a (Ia;b;F)   1
4 0.0001005 0.09162 b3183 obgE -17.79 0.000982 174 -- 220 1 -- 51 GTPase involved in cell partioning and DNA repair   0
5 0.000236 0.1721 b0687 seqA -14.52 0.008393 212 -- 226 5 -- 19 negative modulator of initiation of replication   0
6 0.0004514 0.265 b1243 oppA -15.12 0.005822 61 -- 82 1 -- 25 oligopeptide transporter subunit   0
7 0.0005088 0.265 b3857 mobA -16.59 0.002252 239 -- 276 15 -- 59 molybdopterin-guanine dinucleotide synthase   0
8 0.0006685 0.3047 b0652 gltL -12.15 0.032131 269 -- 295 1 -- 25 glutamate aspartate ABC transporter ATP-binding subunit   0
9 0.0007628 0.309 b2062 wza -15.06 0.006042 187 -- 207 5 -- 27 colanic acid export protein; outer membrane auxillary lipoprotein   0
10 0.0009172 0.3253 b3391 hofQ -21.53 0.000049 16 -- 73 27 -- 88 DNA catabolic putative fimbrial transporter   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

Job resubmission

Use the following button if you want to resubmit the job with altered input or parameterization:
Feeds the job parameters to the input page to resubmit the job.

de.NBI usability assessment

Please support us by filling this short quality survey for evaluating this de.NBI service.

When using CopraRNA please cite :

Results are computed with CopraRNA version 2.0.1