131 |
0.02082 |
0.5217 |
b2038 |
rfbC |
-12.83 |
0.023839 |
249 -- 268 |
2 -- 18 |
dTDP-4-deoxyrhamnose-3 5-epimerase |
|
_____________248__________________269\n_____________|____________________|\n5'-GGG...AGCCA_____AUU____________AGGUU...CAG-3'\n______________AGAGU___UGGUGAUGAUAG\n______________|:|||___|::|||||||||\n______________UUUCA___AUUACUACUAUC\n3'-UUU...AUUUA____________________G-5'\n_____________|____________________|\n_____________19___________________1\n |
262 -- 268 |
2 -- 8 |
-17.1909 kcal/mol |
4.30321 kcal/mol |
0.0608678 kcal/mol |
248 269@LB@ | |@LB@5'-GGG...AGCCA AUU AGGUU...CAG-3'@LB@ AGAGU UGGUGAUGAUAG@LB@ |:||| |::|||||||||@LB@ UUUCA AUUACUACUAUC@LB@3'-UUU...AUUUA G-5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -17.1909 kcal/mol@LB@Unfolding Energy - mRNA 4.30321 kcal/mol@LB@Unfolding Energy - sRNA 0.0608678 kcal/mol@LB@@LB@Position - mRNA 249 -- 268@LB@Position - sRNA 2 -- 18@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 2 -- 8@LB@ |
132 |
0.0212 |
0.526 |
b2455 |
eutE |
-9.17 |
0.140915 |
224 -- 235 |
1 -- 12 |
aldehyde oxidoreductase ethanolamine utilization protein |
|
_____________223__________236\n_____________|____________|\n5'-GGU...GAACA________A___GGUAC...UCG-3'\n______________GGUGGUGA_AGC\n______________::||:|||_|||\n______________UUACUACU_UCG\n3'-UUU...UUCAA________A___-5'\n_____________|___________|\n_____________13__________1\n |
225 -- 231 |
5 -- 11 |
-12.5804 kcal/mol |
3.3751 kcal/mol |
0.0394463 kcal/mol |
223 236@LB@ | |@LB@5'-GGU...GAACA A GGUAC...UCG-3'@LB@ GGUGGUGA AGC@LB@ ::||:||| |||@LB@ UUACUACU UCG@LB@3'-UUU...UUCAA A -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -9.17 kcal/mol@LB@Hybridization Energy -12.5804 kcal/mol@LB@Unfolding Energy - mRNA 3.3751 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 224 -- 235@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 5 -- 11@LB@ |
133 |
0.02154 |
0.526 |
b1105 |
lpoB |
-10.17 |
0.089721 |
187 -- 196 |
50 -- 59 |
OM lipoprotein stimulator of MrcB transpeptidase |
|
_____________186________197\n_____________|__________|\n5'-UUA...UUGUA__________CUUGA...AAC-3'\n______________AGGGGUGAAU\n______________||||||:||:\n______________UCCCCAUUUG\n3'-UUU...CUUUA__________UCUGU...UCG-5'\n_____________|__________|\n_____________60_________49\n |
190 -- 196 |
50 -- 56 |
-15.1396 kcal/mol |
4.24097 kcal/mol |
0.728772 kcal/mol |
186 197@LB@ | |@LB@5'-UUA...UUGUA CUUGA...AAC-3'@LB@ AGGGGUGAAU@LB@ ||||||:||:@LB@ UCCCCAUUUG@LB@3'-UUU...CUUUA UCUGU...UCG-5'@LB@ | |@LB@ 60 49@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -15.1396 kcal/mol@LB@Unfolding Energy - mRNA 4.24097 kcal/mol@LB@Unfolding Energy - sRNA 0.728772 kcal/mol@LB@@LB@Position - mRNA 187 -- 196@LB@Position - sRNA 50 -- 59@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
134 |
0.02184 |
0.526 |
b0034 |
caiF |
-11.03 |
0.059446 |
251 -- 259 |
1 -- 9 |
cai operon transcriptional activator |
|
_____________250_______260\n_____________|_________|\n5'-UGA...GAAUG_________UGAAA...AUU-3'\n______________GAUGAUGGC\n______________||||||:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
253 -- 259 |
1 -- 7 |
-13.9707 kcal/mol |
2.91573 kcal/mol |
0.0200155 kcal/mol |
250 260@LB@ | |@LB@5'-UGA...GAAUG UGAAA...AUU-3'@LB@ GAUGAUGGC@LB@ ||||||:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -11.03 kcal/mol@LB@Hybridization Energy -13.9707 kcal/mol@LB@Unfolding Energy - mRNA 2.91573 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 251 -- 259@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 1 -- 7@LB@ |
135 |
0.02191 |
0.526 |
b1342 |
ydaN |
-17.19 |
0.001818 |
129 -- 197 |
1 -- 58 |
putative Zn(II) transporter |
|
_____________128______________________________________________________________________198\n_____________|________________________________________________________________________|\n5'-CGU...GUAAU_______UG_______GCGUAACAGGGC______GCUA____UACA________UGC___________A___ACUGU...AUG-3'\n______________GGGGUGA__AGAUGUU____________CAGAAG_____GAC______AAAUAA___GUUGAUGAUGG_GGC\n______________|||||:|__|||::||____________|||||:_____|||______||||||___|||:||||||:_:||\n______________CCCCAUU__UCUGUAA____________GUCUUU_____CUG______UUUAUU___CAAUUACUACU_UCG\n3'-UUU...UUUAU_______UG_________________________ACUUA___CCAUUA______U_____________A___-5'\n_____________|_______________________________________________________________________|\n_____________59______________________________________________________________________1\n |
187 -- 193 |
5 -- 11 |
-40.4273 kcal/mol |
16.9018 kcal/mol |
6.33758 kcal/mol |
128 198@LB@ | |@LB@5'-CGU...GUAAU UG GCGUAACAGGGC GCUA UACA UGC A ACUGU...AUG-3'@LB@ GGGGUGA AGAUGUU CAGAAG GAC AAAUAA GUUGAUGAUGG GGC@LB@ |||||:| |||::|| |||||: ||| |||||| |||:||||||: :||@LB@ CCCCAUU UCUGUAA GUCUUU CUG UUUAUU CAAUUACUACU UCG@LB@3'-UUU...UUUAU UG ACUUA CCAUUA U A -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -17.19 kcal/mol@LB@Hybridization Energy -40.4273 kcal/mol@LB@Unfolding Energy - mRNA 16.9018 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 129 -- 197@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 5 -- 11@LB@ |
136 |
0.02238 |
0.526 |
b1883 |
cheB |
-10.46 |
0.078180 |
185 -- 206 |
1 -- 23 |
fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA |
|
_____________184______________________207\n_____________|________________________|\n5'-GGG...UGCGC_________A____C_________AAAAU...CGA-3'\n______________UAAGUAAGG_UUAA_GAUGA__GC\n______________|||:|||:|_||||_|||||__||\n______________AUUUAUUUC_AAUU_CUACU__CG\n3'-UUU...CCAUU______________A_____AU__-5'\n_____________|_______________________|\n_____________24______________________1\n |
187 -- 193 |
15 -- 21 |
-15.1436 kcal/mol |
4.57462 kcal/mol |
0.105066 kcal/mol |
184 207@LB@ | |@LB@5'-GGG...UGCGC A C AAAAU...CGA-3'@LB@ UAAGUAAGG UUAA GAUGA GC@LB@ |||:|||:| |||| ||||| ||@LB@ AUUUAUUUC AAUU CUACU CG@LB@3'-UUU...CCAUU A AU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -15.1436 kcal/mol@LB@Unfolding Energy - mRNA 4.57462 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 185 -- 206@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 15 -- 21@LB@ |
137 |
0.02279 |
0.526 |
b1739 |
osmE |
-8.84 |
0.162198 |
202 -- 246 |
21 -- 65 |
osmotically-inducible lipoprotein |
|
_____________201____________________________________________247\n_____________|______________________________________________|\n5'-GAA...GAAUA____CA__AAUAU______A____U______C__C_______U___CCAUG...AGC-3'\n______________UGAA__AG_____GGCAGG_AUUC__GAGUG_AG_GGCGGUA_UAA\n______________||||__||_____::|||:_||||__:|:||_|:_|:|||||_|||\n______________ACUU__UC_____UUGUCU_UAAG__UUUAC_UU_CUGCCAU_AUU\n3'-UUU...GGCCA____UA__CCCAU______G____UC________A_______U___UAUUU...UCG-5'\n_____________|______________________________________________|\n_____________66_____________________________________________20\n |
236 -- 242 |
25 -- 31 |
-25.0909 kcal/mol |
9.03477 kcal/mol |
7.21767 kcal/mol |
201 247@LB@ | |@LB@5'-GAA...GAAUA CA AAUAU A U C C U CCAUG...AGC-3'@LB@ UGAA AG GGCAGG AUUC GAGUG AG GGCGGUA UAA@LB@ |||| || ::|||: |||| :|:|| |: |:||||| |||@LB@ ACUU UC UUGUCU UAAG UUUAC UU CUGCCAU AUU@LB@3'-UUU...GGCCA UA CCCAU G UC A U UAUUU...UCG-5'@LB@ | |@LB@ 66 20@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -25.0909 kcal/mol@LB@Unfolding Energy - mRNA 9.03477 kcal/mol@LB@Unfolding Energy - sRNA 7.21767 kcal/mol@LB@@LB@Position - mRNA 202 -- 246@LB@Position - sRNA 21 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 25 -- 31@LB@ |
138 |
0.02287 |
0.526 |
b0081 |
mraZ |
-12.90 |
0.022954 |
180 -- 193 |
52 -- 64 |
RsmH methytransferase inhibitor |
|
_____________179____________194\n_____________|______________|\n5'-GAU...AAGUG_____A________GGCUG...AAA-3'\n______________GGAAU_AGGGGUGA\n______________|:|||_||||||:|\n______________CUUUA_UCCCCAUU\n3'-UUU...GCCAA______________UGUCU...UCG-5'\n_____________|______________|\n_____________65_____________51\n |
187 -- 193 |
52 -- 58 |
-14.7021 kcal/mol |
1.72638 kcal/mol |
0.0778991 kcal/mol |
179 194@LB@ | |@LB@5'-GAU...AAGUG A GGCUG...AAA-3'@LB@ GGAAU AGGGGUGA@LB@ |:||| ||||||:|@LB@ CUUUA UCCCCAUU@LB@3'-UUU...GCCAA UGUCU...UCG-5'@LB@ | |@LB@ 65 51@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -14.7021 kcal/mol@LB@Unfolding Energy - mRNA 1.72638 kcal/mol@LB@Unfolding Energy - sRNA 0.0778991 kcal/mol@LB@@LB@Position - mRNA 180 -- 193@LB@Position - sRNA 52 -- 64@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 52 -- 58@LB@ |
139 |
0.0229 |
0.526 |
b3958 |
argC |
-10.25 |
0.086580 |
11 -- 36 |
23 -- 56 |
N-acetyl-gamma-glutamylphosphate reductase NAD(P)-binding |
|
_____________10___________________________________37\n_____________|____________________________________|\n5'-AUC...AGCGC_______CUC__________________________UUGUU...CUG-3'\n______________GGUAAAU___GAUA__________AAUGGCGGUAAU\n______________||||||:___||:|__________||||:|||||||\n______________CCAUUUG___CUGU__________UUACUGCCAUUA\n3'-UUU...UAUCC_______U______AAGUCUUUAC____________UUUAU...UCG-5'\n_____________|____________________________________|\n_____________57___________________________________22\n |
30 -- 36 |
23 -- 29 |
-21.8632 kcal/mol |
5.30467 kcal/mol |
6.31216 kcal/mol |
10 37@LB@ | |@LB@5'-AUC...AGCGC CUC UUGUU...CUG-3'@LB@ GGUAAAU GAUA AAUGGCGGUAAU@LB@ ||||||: ||:| ||||:|||||||@LB@ CCAUUUG CUGU UUACUGCCAUUA@LB@3'-UUU...UAUCC U AAGUCUUUAC UUUAU...UCG-5'@LB@ | |@LB@ 57 22@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -21.8632 kcal/mol@LB@Unfolding Energy - mRNA 5.30467 kcal/mol@LB@Unfolding Energy - sRNA 6.31216 kcal/mol@LB@@LB@Position - mRNA 11 -- 36@LB@Position - sRNA 23 -- 56@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 23 -- 29@LB@ |
140 |
0.02319 |
0.526 |
b3615 |
waaH |
-10.58 |
0.073933 |
178 -- 212 |
1 -- 47 |
LPS(HepIII)-glucuronic acid glycosyltransferase |
|
_____________177______________________________________________213\n_____________|________________________________________________|\n5'-GAU...GGAUA____________C____U_______UU________________AC___ACCAA...GGA-3'\n______________AC_UUCAGAGGU____G_CGGUAAU___________AUGAUGA__AGC\n______________||_||||||::|____|_|||||||___________|||||||__|||\n______________UG_AAGUCUUUA____C_GCCAUUA___________UACUACU__UCG\n3'-UUU...UUGUC__U_________CUUA_U_______UUUAUUUCAAU_______A____-5'\n_____________|_______________________________________________|\n_____________48______________________________________________1\n |
201 -- 207 |
5 -- 11 |
-24.9941 kcal/mol |
8.09222 kcal/mol |
6.32011 kcal/mol |
177 213@LB@ | |@LB@5'-GAU...GGAUA C U UU AC ACCAA...GGA-3'@LB@ AC UUCAGAGGU G CGGUAAU AUGAUGA AGC@LB@ || ||||||::| | ||||||| ||||||| |||@LB@ UG AAGUCUUUA C GCCAUUA UACUACU UCG@LB@3'-UUU...UUGUC U CUUA U UUUAUUUCAAU A -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -24.9941 kcal/mol@LB@Unfolding Energy - mRNA 8.09222 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 178 -- 212@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 5 -- 11@LB@ |