| 181 |
0.02995 |
0.5424 |
b0601 |
ybdM |
-11.52 |
0.046768 |
198 -- 207 |
55 -- 64 |
Spo0J family protein ParB-like nuclease domain |
|
_____________197________208\n_____________|__________|\n5'-UUG...CGUCA__________AUACU...GCA-3'\n______________GGAAUGGGGG\n______________|:|||:||||\n______________CUUUAUCCCC\n3'-UUU...GCCAA__________AUUUG...UCG-5'\n_____________|__________|\n_____________65_________54\n |
201 -- 207 |
55 -- 61 |
-14.9628 kcal/mol |
3.4127 kcal/mol |
0.0291912 kcal/mol |
197 208@LB@ | |@LB@5'-UUG...CGUCA AUACU...GCA-3'@LB@ GGAAUGGGGG@LB@ |:|||:||||@LB@ CUUUAUCCCC@LB@3'-UUU...GCCAA AUUUG...UCG-5'@LB@ | |@LB@ 65 54@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -14.9628 kcal/mol@LB@Unfolding Energy - mRNA 3.4127 kcal/mol@LB@Unfolding Energy - sRNA 0.0291912 kcal/mol@LB@@LB@Position - mRNA 198 -- 207@LB@Position - sRNA 55 -- 64@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 182 |
0.03007 |
0.5424 |
b3131 |
agaR |
-10.52 |
0.076061 |
148 -- 177 |
28 -- 59 |
transcriptional repressor of the aga regulon |
|
_____________147______________________________178\n_____________|________________________________|\n5'-CAG...UAGAA___C__U________AAAC_____________AAAGU...AGG-3'\n______________AGG_GU_AAUAGGCA____GAAAUGAA__ACG\n______________|||_||_||:||:||____||||||||__|||\n______________UCC_CA_UUGUCUGU____CUUUACUU__UGC\n3'-UUU...CUUUA___C__U________AAGU________AC___CAUUA...UCG-5'\n_____________|________________________________|\n_____________60_______________________________27\n |
167 -- 173 |
34 -- 40 |
-23.0737 kcal/mol |
6.26419 kcal/mol |
6.28754 kcal/mol |
147 178@LB@ | |@LB@5'-CAG...UAGAA C U AAAC AAAGU...AGG-3'@LB@ AGG GU AAUAGGCA GAAAUGAA ACG@LB@ ||| || ||:||:|| |||||||| |||@LB@ UCC CA UUGUCUGU CUUUACUU UGC@LB@3'-UUU...CUUUA C U AAGU AC CAUUA...UCG-5'@LB@ | |@LB@ 60 27@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -23.0737 kcal/mol@LB@Unfolding Energy - mRNA 6.26419 kcal/mol@LB@Unfolding Energy - sRNA 6.28754 kcal/mol@LB@@LB@Position - mRNA 148 -- 177@LB@Position - sRNA 28 -- 59@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 183 |
0.03025 |
0.5427 |
b0999 |
cbpM |
-7.72 |
0.255487 |
289 -- 296 |
53 -- 60 |
modulator of CbpA co-chaperone |
|
_____________288______297\n_____________|________|\n5'-AUC...CGGUU________GUUG-3'\n______________UGGGGGUG\n______________|:|||||:\n______________AUCCCCAU\n3'-UUU...ACUUU________UUGUC...UCG-5'\n_____________|________|\n_____________61_______52\n |
290 -- 296 |
53 -- 59 |
-12.779 kcal/mol |
4.99203 kcal/mol |
0.0710089 kcal/mol |
288 297@LB@ | |@LB@5'-AUC...CGGUU GUUG-3'@LB@ UGGGGGUG@LB@ |:|||||:@LB@ AUCCCCAU@LB@3'-UUU...ACUUU UUGUC...UCG-5'@LB@ | |@LB@ 61 52@LB@@LB@@LB@Energy -7.72 kcal/mol@LB@Hybridization Energy -12.779 kcal/mol@LB@Unfolding Energy - mRNA 4.99203 kcal/mol@LB@Unfolding Energy - sRNA 0.0710089 kcal/mol@LB@@LB@Position - mRNA 289 -- 296@LB@Position - sRNA 53 -- 60@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 184 |
0.03077 |
0.549 |
b1101 |
ptsG |
-13.95 |
0.012872 |
39 -- 58 |
1 -- 19 |
fused glucose-specific PTS enzymes: IIB component/IIC component |
|
_____________38___________________59\n_____________|____________________|\n5'-CAU...UGAUC_________AAC________CGUCA...GUU-3'\n______________UGAAGUUGA___GUGAUAGC\n______________|:|||||:|___:|||||||\n______________AUUUCAAUU___UACUAUCG\n3'-UUU...UAUUU_________AC_________-5'\n_____________|___________________|\n_____________20__________________1\n |
52 -- 58 |
1 -- 7 |
-17.415 kcal/mol |
3.39679 kcal/mol |
0.0638423 kcal/mol |
38 59@LB@ | |@LB@5'-CAU...UGAUC AAC CGUCA...GUU-3'@LB@ UGAAGUUGA GUGAUAGC@LB@ |:|||||:| :|||||||@LB@ AUUUCAAUU UACUAUCG@LB@3'-UUU...UAUUU AC -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -13.95 kcal/mol@LB@Hybridization Energy -17.415 kcal/mol@LB@Unfolding Energy - mRNA 3.39679 kcal/mol@LB@Unfolding Energy - sRNA 0.0638423 kcal/mol@LB@@LB@Position - mRNA 39 -- 58@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 185 |
0.03096 |
0.5492 |
b1686 |
menI |
-12.09 |
0.035132 |
263 -- 300 |
22 -- 58 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________262____________________________________300\n_____________|______________________________________|\n5'-GGC...AUGGU_____UCCU_________CUU_____CAUAU________-3'\n______________GGGGU____GGAUAUUCG____UGAA_____UGGUGAUG\n______________|||||____:||:||||:____||||_____:|||:||:\n______________CCCCA____UCUGUAAGU____ACUU_____GCCAUUAU\n3'-UUU...UUUAU_____UUUG_________CUUU____ACU__________UUAUU...UCG-5'\n_____________|_______________________________________|\n_____________59______________________________________21\n |
294 -- 300 |
22 -- 28 |
-26.9755 kcal/mol |
8.57608 kcal/mol |
6.31389 kcal/mol |
262 300@LB@ | |@LB@5'-GGC...AUGGU UCCU CUU CAUAU -3'@LB@ GGGGU GGAUAUUCG UGAA UGGUGAUG@LB@ ||||| :||:||||: |||| :|||:||:@LB@ CCCCA UCUGUAAGU ACUU GCCAUUAU@LB@3'-UUU...UUUAU UUUG CUUU ACU UUAUU...UCG-5'@LB@ | |@LB@ 59 21@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -26.9755 kcal/mol@LB@Unfolding Energy - mRNA 8.57608 kcal/mol@LB@Unfolding Energy - sRNA 6.31389 kcal/mol@LB@@LB@Position - mRNA 263 -- 300@LB@Position - sRNA 22 -- 58@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 186 |
0.03152 |
0.5492 |
b0922 |
mukF |
-11.29 |
0.052395 |
27 -- 43 |
42 -- 57 |
chromosome condensin MukBEF kleisin-like subunit binds calcium |
|
_____________26________________44\n_____________|_________________|\n5'-CUG...AUUAU____A____________GCGUG...UGG-3'\n______________GGGU_AGACAGGCGUUC\n______________||||_|:||||:|:|||\n______________CCCA_UUUGUCUGUAAG\n3'-UUU...UUAUC_________________UCUUU...UCG-5'\n_____________|_________________|\n_____________58________________41\n |
33 -- 39 |
46 -- 52 |
-21.5353 kcal/mol |
3.99758 kcal/mol |
6.24533 kcal/mol |
26 44@LB@ | |@LB@5'-CUG...AUUAU A GCGUG...UGG-3'@LB@ GGGU AGACAGGCGUUC@LB@ |||| |:||||:|:|||@LB@ CCCA UUUGUCUGUAAG@LB@3'-UUU...UUAUC UCUUU...UCG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -21.5353 kcal/mol@LB@Unfolding Energy - mRNA 3.99758 kcal/mol@LB@Unfolding Energy - sRNA 6.24533 kcal/mol@LB@@LB@Position - mRNA 27 -- 43@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 187 |
0.03165 |
0.5492 |
b2717 |
hycI |
-9.48 |
0.123006 |
243 -- 251 |
1 -- 9 |
protease involved in processing C-terminal end of HycE |
|
_____________242_______252\n_____________|_________|\n5'-AGC...UGGGC_________GCAGG...ACU-3'\n______________GAUGAUGGC\n______________||||||:||\n______________CUACUAUCG\n3'-UUU...AAUUA_________-5'\n_____________|________|\n_____________10_______1\n |
245 -- 251 |
1 -- 7 |
-13.2104 kcal/mol |
3.71514 kcal/mol |
0.0200155 kcal/mol |
242 252@LB@ | |@LB@5'-AGC...UGGGC GCAGG...ACU-3'@LB@ GAUGAUGGC@LB@ ||||||:||@LB@ CUACUAUCG@LB@3'-UUU...AAUUA -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -13.2104 kcal/mol@LB@Unfolding Energy - mRNA 3.71514 kcal/mol@LB@Unfolding Energy - sRNA 0.0200155 kcal/mol@LB@@LB@Position - mRNA 243 -- 251@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 188 |
0.03165 |
0.5492 |
b3247 |
rng |
-10.28 |
0.085420 |
187 -- 220 |
10 -- 64 |
ribonuclease G |
|
_____________186_____________________________________________________221\n_____________|_______________________________________________________|\n5'-GUU...CGUGA_________A____________________________C_______U________AAACG...CGC-3'\n______________GAAA_AGGG_UAAAC________________AUGACGG___UGAAU___GUUAGU\n______________||||_||||_|||||________________|||||||___|:|||___||||:|\n______________CUUU_UCCC_AUUUG________________UACUGCC___AUUUA___CAAUUA\n3'-UUU...GCCAA____A____C_____UCUGUAAGUCUUUACU_______AUU_____UUU______CUACU...UCG-5'\n_____________|_______________________________________________________|\n_____________65______________________________________________________9\n |
201 -- 207 |
27 -- 33 |
-22.7807 kcal/mol |
6.16544 kcal/mol |
6.33995 kcal/mol |
186 221@LB@ | |@LB@5'-GUU...CGUGA A C U AAACG...CGC-3'@LB@ GAAA AGGG UAAAC AUGACGG UGAAU GUUAGU@LB@ |||| |||| ||||| ||||||| |:||| ||||:|@LB@ CUUU UCCC AUUUG UACUGCC AUUUA CAAUUA@LB@3'-UUU...GCCAA A C UCUGUAAGUCUUUACU AUU UUU CUACU...UCG-5'@LB@ | |@LB@ 65 9@LB@@LB@@LB@Energy -10.28 kcal/mol@LB@Hybridization Energy -22.7807 kcal/mol@LB@Unfolding Energy - mRNA 6.16544 kcal/mol@LB@Unfolding Energy - sRNA 6.33995 kcal/mol@LB@@LB@Position - mRNA 187 -- 220@LB@Position - sRNA 10 -- 64@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 189 |
0.03168 |
0.5492 |
b1533 |
eamA |
-9.19 |
0.139150 |
178 -- 226 |
1 -- 49 |
cysteine and O-acetyl-L-serine efflux system |
|
_____________177_______________________________________________________227\n_____________|_________________________________________________________|\n5'-GUU...ACAAA____GAA______________________AAU__CGCGA____A________U____GCUAC...UGA-3'\n______________AGAU___AUUCAGA_______GGCGGUAG___GU_____AAAG_UGG_GGUG_UGGC\n______________|||:___|||||||_______|:|||||:___:|_____||||_|::_|:||_|:||\n______________UCUG___UAAGUCU_______CUGCCAUU___UA_____UUUC_AUU_CUAC_AUCG\n3'-UUU...AUUUG______________UUACUUA________AUU___________A___A____U____-5'\n_____________|________________________________________________________|\n_____________50_______________________________________________________1\n |
193 -- 199 |
24 -- 30 |
-25.3484 kcal/mol |
9.82981 kcal/mol |
6.32371 kcal/mol |
177 227@LB@ | |@LB@5'-GUU...ACAAA GAA AAU CGCGA A U GCUAC...UGA-3'@LB@ AGAU AUUCAGA GGCGGUAG GU AAAG UGG GGUG UGGC@LB@ |||: ||||||| |:|||||: :| |||| |:: |:|| |:||@LB@ UCUG UAAGUCU CUGCCAUU UA UUUC AUU CUAC AUCG@LB@3'-UUU...AUUUG UUACUUA AUU A A U -5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -9.19 kcal/mol@LB@Hybridization Energy -25.3484 kcal/mol@LB@Unfolding Energy - mRNA 9.82981 kcal/mol@LB@Unfolding Energy - sRNA 6.32371 kcal/mol@LB@@LB@Position - mRNA 178 -- 226@LB@Position - sRNA 1 -- 49@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 190 |
0.03178 |
0.5492 |
b2266 |
elaB |
-7.52 |
0.274944 |
163 -- 222 |
3 -- 61 |
putative membrane-anchored DUF883 family ribosome-binding protein |
|
_____________162_____________________________________________________________223\n_____________|_______________________________________________________________|\n5'-ACU...UGUCU____UUAGU______U_____C_C_______GA___AG____UC___UC______________CACGU...AUC-3'\n______________AUAG_____GACAGG__UUUA_G_AAAUGGA__ACG__AAUG__UAA__AGUU__UGGUGAUA\n______________||||_____:||||:__||:|_|_|||||:|__|||__|||:__|||__||||__||:|||||\n______________UAUC_____UUGUCU__AAGU_C_UUUACUU__UGC__UUAU__AUU__UCAA__ACUACUAU\n3'-UUU...AACUU____CCCAU______GU______________AC___CA____UU_________UU________CG-5'\n_____________|_______________________________________________________________|\n_____________62______________________________________________________________2\n |
216 -- 222 |
3 -- 9 |
-26.4945 kcal/mol |
12.6276 kcal/mol |
6.34398 kcal/mol |
162 223@LB@ | |@LB@5'-ACU...UGUCU UUAGU U C C GA AG UC UC CACGU...AUC-3'@LB@ AUAG GACAGG UUUA G AAAUGGA ACG AAUG UAA AGUU UGGUGAUA@LB@ |||| :||||: ||:| | |||||:| ||| |||: ||| |||| ||:|||||@LB@ UAUC UUGUCU AAGU C UUUACUU UGC UUAU AUU UCAA ACUACUAU@LB@3'-UUU...AACUU CCCAU GU AC CA UU UU CG-5'@LB@ | |@LB@ 62 2@LB@@LB@@LB@Energy -7.52 kcal/mol@LB@Hybridization Energy -26.4945 kcal/mol@LB@Unfolding Energy - mRNA 12.6276 kcal/mol@LB@Unfolding Energy - sRNA 6.34398 kcal/mol@LB@@LB@Position - mRNA 163 -- 222@LB@Position - sRNA 3 -- 61@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 3 -- 9@LB@ |
