| 51 |
0.006039 |
0.3887 |
b3822 |
recQ |
-9.34 |
0.130811 |
192 -- 200 |
50 -- 58 |
ATP-dependent DNA helicase |
|
_____________191_______201\n_____________|_________|\n5'-CGC...CAAUC_________GUGGC...UUA-3'\n______________GGGGUGAAU\n______________|||||:||:\n______________CCCCAUUUG\n3'-UUU...UUUAU_________UCUGU...UCG-5'\n_____________|_________|\n_____________59________49\n |
194 -- 200 |
50 -- 56 |
-13.8974 kcal/mol |
3.8337 kcal/mol |
0.72763 kcal/mol |
191 201@LB@ | |@LB@5'-CGC...CAAUC GUGGC...UUA-3'@LB@ GGGGUGAAU@LB@ |||||:||:@LB@ CCCCAUUUG@LB@3'-UUU...UUUAU UCUGU...UCG-5'@LB@ | |@LB@ 59 49@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -13.8974 kcal/mol@LB@Unfolding Energy - mRNA 3.8337 kcal/mol@LB@Unfolding Energy - sRNA 0.72763 kcal/mol@LB@@LB@Position - mRNA 192 -- 200@LB@Position - sRNA 50 -- 58@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 52 |
0.0063 |
0.3902 |
b1473 |
yddG |
-8.84 |
0.162012 |
257 -- 264 |
2 -- 9 |
aromatic amino acid exporter |
|
_____________256______265\n_____________|________|\n5'-GCG...AGCAC________GAUUG...CGG-3'\n______________GAUGGUAG\n______________||||:|||\n______________CUACUAUC\n3'-UUU...AAUUA________G-5'\n_____________|________|\n_____________10_______1\n |
258 -- 264 |
2 -- 8 |
-10.1209 kcal/mol |
1.26064 kcal/mol |
0.0191352 kcal/mol |
256 265@LB@ | |@LB@5'-GCG...AGCAC GAUUG...CGG-3'@LB@ GAUGGUAG@LB@ ||||:|||@LB@ CUACUAUC@LB@3'-UUU...AAUUA G-5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -10.1209 kcal/mol@LB@Unfolding Energy - mRNA 1.26064 kcal/mol@LB@Unfolding Energy - sRNA 0.0191352 kcal/mol@LB@@LB@Position - mRNA 257 -- 264@LB@Position - sRNA 2 -- 9@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 53 |
0.006355 |
0.3902 |
b2916 |
argP |
-17.11 |
0.001913 |
217 -- 267 |
1 -- 51 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________216____________________________________________________268\n_____________|______________________________________________________|\n5'-GGC...GGACU____A_____A____CAC_______________C_____CGAG_____UUG___GCGCG...CAG-3'\n______________ACAG_ACAUU_CAGG___UGGAUG_CGGUGAUA_GUGAA______GAU___AGC\n______________||||_|||||_|||:___||:|||_||||:|||_:|:||______|||___|||\n______________UGUC_UGUAA_GUCU___ACUUAC_GCCAUUAU_UAUUU______CUA___UCG\n3'-UUU...CCAUU_______________UU_______U________U_____CAAUUA___CUA___-5'\n_____________|_____________________________________________________|\n_____________52____________________________________________________1\n |
242 -- 248 |
22 -- 28 |
-33.3201 kcal/mol |
9.87503 kcal/mol |
6.33528 kcal/mol |
216 268@LB@ | |@LB@5'-GGC...GGACU A A CAC C CGAG UUG GCGCG...CAG-3'@LB@ ACAG ACAUU CAGG UGGAUG CGGUGAUA GUGAA GAU AGC@LB@ |||| ||||| |||: ||:||| ||||:||| :|:|| ||| |||@LB@ UGUC UGUAA GUCU ACUUAC GCCAUUAU UAUUU CUA UCG@LB@3'-UUU...CCAUU UU U U CAAUUA CUA -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -33.3201 kcal/mol@LB@Unfolding Energy - mRNA 9.87503 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 217 -- 267@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 54 |
0.006418 |
0.3902 |
b0946 |
zapC |
-14.33 |
0.010402 |
184 -- 201 |
47 -- 63 |
FtsZ stabilizer |
|
_____________183________________202\n_____________|__________________|\n5'-AUU...UUAUA_________AG_______UGCGA...GUU-3'\n______________GGGUAGGGG__AGGCAGA\n______________:::||||||__|::||||\n______________UUUAUCCCC__UUUGUCU\n3'-UUU...CCAAC_________A________GUAAG...UCG-5'\n_____________|__________________|\n_____________64_________________46\n |
195 -- 201 |
47 -- 53 |
-19.5846 kcal/mol |
3.17109 kcal/mol |
2.08245 kcal/mol |
183 202@LB@ | |@LB@5'-AUU...UUAUA AG UGCGA...GUU-3'@LB@ GGGUAGGGG AGGCAGA@LB@ :::|||||| |::||||@LB@ UUUAUCCCC UUUGUCU@LB@3'-UUU...CCAAC A GUAAG...UCG-5'@LB@ | |@LB@ 64 46@LB@@LB@@LB@Energy -14.33 kcal/mol@LB@Hybridization Energy -19.5846 kcal/mol@LB@Unfolding Energy - mRNA 3.17109 kcal/mol@LB@Unfolding Energy - sRNA 2.08245 kcal/mol@LB@@LB@Position - mRNA 184 -- 201@LB@Position - sRNA 47 -- 63@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 55 |
0.006796 |
0.4056 |
b3192 |
mlaC |
-12.17 |
0.033659 |
167 -- 226 |
1 -- 57 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-GGA...CCUGU_____C______AAUAAU____________CC____C_____UU____C_U___________C__UUUGC...AGG-3'\n______________GGGUA_AAC_GA______UUCAGGA__GAA__GACG___AUG__UAAA_G_UUAAUGAUGGU_GC\n______________|||||_|||_||______|||||:|__|||__||||___||:__||||_|_|||||||||:|_||\n______________CCCAU_UUG_CU______AAGUCUU__CUU__CUGC___UAU__AUUU_C_AAUUACUACUA_CG\n3'-UUU...UUAUC_________U__GU___________UA___A_____CAU___UU__________________U__-5'\n_____________|________________________________________________________________|\n_____________58_______________________________________________________________1\n |
217 -- 223 |
4 -- 10 |
-32.157 kcal/mol |
13.6506 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-GGA...CCUGU C AAUAAU CC C UU C U C UUUGC...AGG-3'@LB@ GGGUA AAC GA UUCAGGA GAA GACG AUG UAAA G UUAAUGAUGGU GC@LB@ ||||| ||| || |||||:| ||| |||| ||: |||| | |||||||||:| ||@LB@ CCCAU UUG CU AAGUCUU CUU CUGC UAU AUUU C AAUUACUACUA CG@LB@3'-UUU...UUAUC U GU UA A CAU UU U -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.17 kcal/mol@LB@Hybridization Energy -32.157 kcal/mol@LB@Unfolding Energy - mRNA 13.6506 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 56 |
0.007094 |
0.4159 |
b1242 |
ychE |
-10.14 |
0.091024 |
67 -- 90 |
1 -- 23 |
UPF0056 family inner membrane protein |
|
_____________66_______________________91\n_____________|________________________|\n5'-CAU...ACAAC_______CAA___C_A________AAUUU...GCA-3'\n______________UAGAUAA___UAA_G_AUGAUAGC\n______________||:||||___|||_|_||||||||\n______________AUUUAUU___AUU_C_UACUAUCG\n3'-UUU...CCAUU_______UCA___A__________-5'\n_____________|_______________________|\n_____________24______________________1\n |
84 -- 90 |
1 -- 7 |
-13.9916 kcal/mol |
3.74778 kcal/mol |
0.105066 kcal/mol |
66 91@LB@ | |@LB@5'-CAU...ACAAC CAA C A AAUUU...GCA-3'@LB@ UAGAUAA UAA G AUGAUAGC@LB@ ||:|||| ||| | ||||||||@LB@ AUUUAUU AUU C UACUAUCG@LB@3'-UUU...CCAUU UCA A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -10.14 kcal/mol@LB@Hybridization Energy -13.9916 kcal/mol@LB@Unfolding Energy - mRNA 3.74778 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 67 -- 90@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 57 |
0.007764 |
0.4472 |
b0585 |
fes |
-12.40 |
0.029926 |
182 -- 237 |
1 -- 55 |
enterobactin/ferrienterobactin esterase |
|
_____________181___________________________________________________________238\n_____________|_____________________________________________________________|\n5'-CAU...GCACA_______U__G____________U_______CGU____AGU__GA_____GAGC_______AGUCG...GGU-3'\n______________GUAAACA_GG_GUU_____AUGG_GUGACGG___UAAA___AG__AGUGA____UGGUGGC\n______________|||||||_|:_:||_____|||:_:||||||___||||___||__|:|||____||:|:||\n______________CAUUUGU_CU_UAA_____UACU_UACUGCC___AUUU___UC__UUACU____ACUAUCG\n3'-UUU...AUCCC__________G___GUCUU____________AUU____AUU__AA________________-5'\n_____________|____________________________________________________________|\n_____________56___________________________________________________________1\n |
231 -- 237 |
1 -- 7 |
-34.1879 kcal/mol |
15.4551 kcal/mol |
6.33758 kcal/mol |
181 238@LB@ | |@LB@5'-CAU...GCACA U G U CGU AGU GA GAGC AGUCG...GGU-3'@LB@ GUAAACA GG GUU AUGG GUGACGG UAAA AG AGUGA UGGUGGC@LB@ ||||||| |: :|| |||: :|||||| |||| || |:||| ||:|:||@LB@ CAUUUGU CU UAA UACU UACUGCC AUUU UC UUACU ACUAUCG@LB@3'-UUU...AUCCC G GUCUU AUU AUU AA -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.40 kcal/mol@LB@Hybridization Energy -34.1879 kcal/mol@LB@Unfolding Energy - mRNA 15.4551 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 182 -- 237@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 58 |
0.008338 |
0.4523 |
b2280 |
nuoJ |
-13.62 |
0.015495 |
7 -- 16 |
55 -- 64 |
NADH:ubiquinone oxidoreductase membrane subunit J |
|
_____________6__________17\n_____________|__________|\n_____5'-GAUUUC__________AAUAC...UUA-3'\n______________GAAAUGGGGG\n______________|||||:||||\n______________CUUUAUCCCC\n3'-UUU...GCCAA__________AUUUG...UCG-5'\n_____________|__________|\n_____________65_________54\n |
10 -- 16 |
55 -- 61 |
-15.5198 kcal/mol |
1.86933 kcal/mol |
0.0291912 kcal/mol |
6 17@LB@ | |@LB@ 5'-GAUUUC AAUAC...UUA-3'@LB@ GAAAUGGGGG@LB@ |||||:||||@LB@ CUUUAUCCCC@LB@3'-UUU...GCCAA AUUUG...UCG-5'@LB@ | |@LB@ 65 54@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -15.5198 kcal/mol@LB@Unfolding Energy - mRNA 1.86933 kcal/mol@LB@Unfolding Energy - sRNA 0.0291912 kcal/mol@LB@@LB@Position - mRNA 7 -- 16@LB@Position - sRNA 55 -- 64@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 59 |
0.008416 |
0.4523 |
b0566 |
envY |
-9.46 |
0.123665 |
249 -- 263 |
50 -- 64 |
porin thermoregulatory transcriptional activator |
b1499 b0564 b3515 b4116 b3516 |
_____________248_____________264\n_____________|_______________|\n5'-GGC...AAAAA_______A_______GUCAA...ACU-3'\n______________GAGGUAG_GGUAAGC\n______________||::|||_|||||:|\n______________CUUUAUC_CCAUUUG\n3'-UUU...GCCAA_______C_______UCUGU...UCG-5'\n_____________|_______________|\n_____________65______________49\n |
257 -- 263 |
50 -- 56 |
-15.2892 kcal/mol |
5.08919 kcal/mol |
0.736811 kcal/mol |
248 264@LB@ | |@LB@5'-GGC...AAAAA A GUCAA...ACU-3'@LB@ GAGGUAG GGUAAGC@LB@ ||::||| |||||:|@LB@ CUUUAUC CCAUUUG@LB@3'-UUU...GCCAA C UCUGU...UCG-5'@LB@ | |@LB@ 65 49@LB@@LB@@LB@Energy -9.46 kcal/mol@LB@Hybridization Energy -15.2892 kcal/mol@LB@Unfolding Energy - mRNA 5.08919 kcal/mol@LB@Unfolding Energy - sRNA 0.736811 kcal/mol@LB@@LB@Position - mRNA 249 -- 263@LB@Position - sRNA 50 -- 64@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 60 |
0.008489 |
0.4523 |
b3912 |
cpxR |
-10.34 |
0.082729 |
218 -- 229 |
5 -- 16 |
response regulator in two-component regulatory system with CpxA |
|
_____________217__________230\n_____________|____________|\n5'-UGA...CUGUU____________CCGAG...AUG-3'\n______________AGUUGAUGAUGA\n______________||||:|||||||\n______________UCAAUUACUACU\n3'-UUU...UUAUU____________AUCG-5'\n_____________|____________|\n_____________17___________4\n |
223 -- 229 |
5 -- 11 |
-14.1725 kcal/mol |
3.78244 kcal/mol |
0.0462955 kcal/mol |
217 230@LB@ | |@LB@5'-UGA...CUGUU CCGAG...AUG-3'@LB@ AGUUGAUGAUGA@LB@ ||||:|||||||@LB@ UCAAUUACUACU@LB@3'-UUU...UUAUU AUCG-5'@LB@ | |@LB@ 17 4@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -14.1725 kcal/mol@LB@Unfolding Energy - mRNA 3.78244 kcal/mol@LB@Unfolding Energy - sRNA 0.0462955 kcal/mol@LB@@LB@Position - mRNA 218 -- 229@LB@Position - sRNA 5 -- 16@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 5 -- 11@LB@ |
