| 21 |
0.001002 |
0.1516 |
b4045 |
yjbJ |
-13.25 |
0.018991 |
259 -- 290 |
28 -- 62 |
stress-induced protein UPF0337 family |
|
_____________258__________________________________291\n_____________|____________________________________|\n5'-CGU...AGAGC_______C_____U___CGAU________U______AUCAU...AAG-3'\n______________AAUGGGG__AAAC_GAC_______GAUGA_AUGACG\n______________|||:|||__||||_|||_______:||||_||||||\n______________UUAUCCC__UUUG_CUG_______UUACU_UACUGC\n3'-UUU...CAACU_______CA____U___UAAGUCU____________CAUUA...UCG-5'\n_____________|____________________________________|\n_____________63___________________________________27\n |
259 -- 265 |
56 -- 62 |
-23.7721 kcal/mol |
4.22826 kcal/mol |
6.29418 kcal/mol |
258 291@LB@ | |@LB@5'-CGU...AGAGC C U CGAU U AUCAU...AAG-3'@LB@ AAUGGGG AAAC GAC GAUGA AUGACG@LB@ |||:||| |||| ||| :|||| ||||||@LB@ UUAUCCC UUUG CUG UUACU UACUGC@LB@3'-UUU...CAACU CA U UAAGUCU CAUUA...UCG-5'@LB@ | |@LB@ 63 27@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -23.7721 kcal/mol@LB@Unfolding Energy - mRNA 4.22826 kcal/mol@LB@Unfolding Energy - sRNA 6.29418 kcal/mol@LB@@LB@Position - mRNA 259 -- 290@LB@Position - sRNA 28 -- 62@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 22 |
0.001016 |
0.1516 |
b0734 |
cydB |
-13.57 |
0.015928 |
285 -- 300 |
49 -- 64 |
cytochrome d terminal oxidase subunit II |
|
_____________284_____________300\n_____________|_______________|\n5'-CGA...GUUUC__C_____________-3'\n______________GA_AUGGGGGUGGGCA\n______________||_||:|||||:::||\n______________CU_UAUCCCCAUUUGU\n3'-UUU...GCCAA__U_____________CUGUA...UCG-5'\n_____________|________________|\n_____________65_______________48\n |
294 -- 300 |
49 -- 55 |
-19.142 kcal/mol |
4.83222 kcal/mol |
0.738518 kcal/mol |
284 300@LB@ | |@LB@5'-CGA...GUUUC C -3'@LB@ GA AUGGGGGUGGGCA@LB@ || ||:|||||:::||@LB@ CU UAUCCCCAUUUGU@LB@3'-UUU...GCCAA U CUGUA...UCG-5'@LB@ | |@LB@ 65 48@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -19.142 kcal/mol@LB@Unfolding Energy - mRNA 4.83222 kcal/mol@LB@Unfolding Energy - sRNA 0.738518 kcal/mol@LB@@LB@Position - mRNA 285 -- 300@LB@Position - sRNA 49 -- 64@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 23 |
0.001279 |
0.1825 |
b0199 |
metN |
-18.57 |
0.000714 |
152 -- 205 |
7 -- 50 |
DL-methionine transporter subunit |
|
_____________151_______________________________________________________206\n_____________|_________________________________________________________|\n5'-CGC...CGUUU________________CCACGACUAACUU_______A__________UC________AAAAC...UUU-3'\n______________CAGGCAUUC_GAGAUG_____________AAUGACG_UAAUAAAUAA____AAUGAU\n______________|||:|||||_||:|||_____________|||||||_||||||||||____||||||\n______________GUCUGUAAG_CUUUAC_____________UUACUGC_AUUAUUUAUU____UUACUA\n3'-UUU...CAUUU_________U__________________________C__________UCAA______CUAUCG-5'\n_____________|_________________________________________________________|\n_____________51________________________________________________________6\n |
191 -- 197 |
17 -- 23 |
-35.1892 kcal/mol |
10.2873 kcal/mol |
6.33206 kcal/mol |
151 206@LB@ | |@LB@5'-CGC...CGUUU CCACGACUAACUU A UC AAAAC...UUU-3'@LB@ CAGGCAUUC GAGAUG AAUGACG UAAUAAAUAA AAUGAU@LB@ |||:||||| ||:||| ||||||| |||||||||| ||||||@LB@ GUCUGUAAG CUUUAC UUACUGC AUUAUUUAUU UUACUA@LB@3'-UUU...CAUUU U C UCAA CUAUCG-5'@LB@ | |@LB@ 51 6@LB@@LB@@LB@Energy -18.57 kcal/mol@LB@Hybridization Energy -35.1892 kcal/mol@LB@Unfolding Energy - mRNA 10.2873 kcal/mol@LB@Unfolding Energy - sRNA 6.33206 kcal/mol@LB@@LB@Position - mRNA 152 -- 205@LB@Position - sRNA 7 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 24 |
0.001422 |
0.1946 |
b0065 |
yabI |
-15.22 |
0.006192 |
70 -- 99 |
1 -- 29 |
DedA family inner membrane protein |
|
_____________69______________________________100\n_____________|_______________________________|\n5'-UGA...CGUGC____U_____GAA_____G____________CGUCA...GUU-3'\n______________CGGU_GUGAA___AAAGU_AAUGAUG_UAGC\n______________||||_:|:||___|||||_|||||||_||||\n______________GCCA_UAUUU___UUUCA_UUACUAC_AUCG\n3'-UUU...UUACU____U_____A_______A_______U____-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
89 -- 95 |
6 -- 12 |
-22.6746 kcal/mol |
5.32597 kcal/mol |
2.12711 kcal/mol |
69 100@LB@ | |@LB@5'-UGA...CGUGC U GAA G CGUCA...GUU-3'@LB@ CGGU GUGAA AAAGU AAUGAUG UAGC@LB@ |||| :|:|| ||||| ||||||| ||||@LB@ GCCA UAUUU UUUCA UUACUAC AUCG@LB@3'-UUU...UUACU U A A U -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -15.22 kcal/mol@LB@Hybridization Energy -22.6746 kcal/mol@LB@Unfolding Energy - mRNA 5.32597 kcal/mol@LB@Unfolding Energy - sRNA 2.12711 kcal/mol@LB@@LB@Position - mRNA 70 -- 99@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 89 -- 95@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 25 |
0.00149 |
0.1957 |
b4244 |
pyrI |
-16.22 |
0.003374 |
188 -- 229 |
11 -- 59 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________187_________________________________________________230\n_____________|___________________________________________________|\n5'-UUC...CUGUA__________________________CAC___A________UGC_______AGCUA...UCA-3'\n______________AGGGG_AAAUAGA________GAUGA___ACG_UAAUAAAU___AGGUUGA\n______________|||||_|||:|||________:||||___|||_||||||||___|:|||:|\n______________UCCCC_UUUGUCU________UUACU___UGC_AUUAUUUA___UUCAAUU\n3'-UUU...CUUUA_____A_______GUAAGUCU_____UAC___C________U_________ACUAC...UCG-5'\n_____________|___________________________________________________|\n_____________60__________________________________________________10\n |
223 -- 229 |
11 -- 17 |
-28.8643 kcal/mol |
6.31236 kcal/mol |
6.33314 kcal/mol |
187 230@LB@ | |@LB@5'-UUC...CUGUA CAC A UGC AGCUA...UCA-3'@LB@ AGGGG AAAUAGA GAUGA ACG UAAUAAAU AGGUUGA@LB@ ||||| |||:||| :|||| ||| |||||||| |:|||:|@LB@ UCCCC UUUGUCU UUACU UGC AUUAUUUA UUCAAUU@LB@3'-UUU...CUUUA A GUAAGUCU UAC C U ACUAC...UCG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -28.8643 kcal/mol@LB@Unfolding Energy - mRNA 6.31236 kcal/mol@LB@Unfolding Energy - sRNA 6.33314 kcal/mol@LB@@LB@Position - mRNA 188 -- 229@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 26 |
0.001686 |
0.211 |
b0091 |
murC |
-10.53 |
0.075719 |
174 -- 220 |
1 -- 48 |
UDP-N-acetylmuramate:L-alanine ligase |
|
_____________173______________________________________________221\n_____________|________________________________________________|\n5'-CAG...CGUAU__AUUUA______U___________A_______UACACAACAAU____AAAAC...GCG-3'\n______________GA_____AGAAGU_AAUGGC_GUAA_GAAUGAA___________UGGC\n______________||_____||||:|_||||:|_||||_:|||:||___________|:||\n______________CU_____UCUUUA_UUACUG_CAUU_UUUAUUU___________AUCG\n3'-UUU...UUUGU__GUAAG______C______C____A_______CAAUUACUACU____-5'\n_____________|_______________________________________________|\n_____________49______________________________________________1\n |
199 -- 205 |
16 -- 22 |
-22.2946 kcal/mol |
5.44296 kcal/mol |
6.32011 kcal/mol |
173 221@LB@ | |@LB@5'-CAG...CGUAU AUUUA U A UACACAACAAU AAAAC...GCG-3'@LB@ GA AGAAGU AAUGGC GUAA GAAUGAA UGGC@LB@ || ||||:| ||||:| |||| :|||:|| |:||@LB@ CU UCUUUA UUACUG CAUU UUUAUUU AUCG@LB@3'-UUU...UUUGU GUAAG C C A CAAUUACUACU -5'@LB@ | |@LB@ 49 1@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -22.2946 kcal/mol@LB@Unfolding Energy - mRNA 5.44296 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 174 -- 220@LB@Position - sRNA 1 -- 48@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 27 |
0.001735 |
0.211 |
b3052 |
hldE |
-15.91 |
0.004078 |
227 -- 261 |
1 -- 47 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________226______________________________________________262\n_____________|________________________________________________|\n5'-GCG...UUUGA____G_____________________________________UGAU__UGGAU...CGC-3'\n______________ACGU_CAG____GAGUGAUGGU_________GGUUGGUGAUG____GC\n______________||:|_|||____||:|||:|||_________:|||::|||||____||\n______________UGUA_GUC____CUUACUGCCA_________UCAAUUACUAC____CG\n3'-UUU...UUGUC____A___UUUA__________UUAUUUAUU___________UAU___-5'\n_____________|_______________________________________________|\n_____________48______________________________________________1\n |
249 -- 255 |
6 -- 12 |
-30.7414 kcal/mol |
8.50852 kcal/mol |
6.32011 kcal/mol |
226 262@LB@ | |@LB@5'-GCG...UUUGA G UGAU UGGAU...CGC-3'@LB@ ACGU CAG GAGUGAUGGU GGUUGGUGAUG GC@LB@ ||:| ||| ||:|||:||| :|||::||||| ||@LB@ UGUA GUC CUUACUGCCA UCAAUUACUAC CG@LB@3'-UUU...UUGUC A UUUA UUAUUUAUU UAU -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -15.91 kcal/mol@LB@Hybridization Energy -30.7414 kcal/mol@LB@Unfolding Energy - mRNA 8.50852 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 227 -- 261@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 28 |
0.00198 |
0.2275 |
b2821 |
ptrA |
-8.02 |
0.226801 |
174 -- 191 |
5 -- 22 |
protease III |
|
_____________173________________192\n_____________|__________________|\n5'-GCU...ACAGA____U________U____GGUCC...CCA-3'\n______________AAAU_AAGUUGAU_AUGA\n______________||||_|||||:||_||||\n______________UUUA_UUCAAUUA_UACU\n3'-UUU...CAUUA____U________C____AUCG-5'\n_____________|__________________|\n_____________23_________________4\n |
180 -- 186 |
10 -- 16 |
-10.4485 kcal/mol |
2.32937 kcal/mol |
0.0977783 kcal/mol |
173 192@LB@ | |@LB@5'-GCU...ACAGA U U GGUCC...CCA-3'@LB@ AAAU AAGUUGAU AUGA@LB@ |||| |||||:|| ||||@LB@ UUUA UUCAAUUA UACU@LB@3'-UUU...CAUUA U C AUCG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -10.4485 kcal/mol@LB@Unfolding Energy - mRNA 2.32937 kcal/mol@LB@Unfolding Energy - sRNA 0.0977783 kcal/mol@LB@@LB@Position - mRNA 174 -- 191@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 29 |
0.00201 |
0.2275 |
b1479 |
maeA |
-13.16 |
0.019904 |
170 -- 200 |
29 -- 59 |
malate dehydrogenase decarboxylating NAD-requiring; malic enzyme |
|
_____________169_________________________________201\n_____________|___________________________________|\n5'-UAG...CCCCC___________________AAAAA___________AUGGA...GCA-3'\n______________AGGG____AUGGAUAUUCA_____GAGUGAGUGAC\n______________||||____|::||:|||||_____:|:|||:||||\n______________UCCC____UGUCUGUAAGU_____UUUACUUACUG\n3'-UUU...CUUUA____CAUU___________C_______________CCAUU...UCG-5'\n_____________|___________________________________|\n_____________60__________________________________28\n |
194 -- 200 |
29 -- 35 |
-27.1811 kcal/mol |
7.73175 kcal/mol |
6.28641 kcal/mol |
169 201@LB@ | |@LB@5'-UAG...CCCCC AAAAA AUGGA...GCA-3'@LB@ AGGG AUGGAUAUUCA GAGUGAGUGAC@LB@ |||| |::||:||||| :|:|||:||||@LB@ UCCC UGUCUGUAAGU UUUACUUACUG@LB@3'-UUU...CUUUA CAUU C CCAUU...UCG-5'@LB@ | |@LB@ 60 28@LB@@LB@@LB@Energy -13.16 kcal/mol@LB@Hybridization Energy -27.1811 kcal/mol@LB@Unfolding Energy - mRNA 7.73175 kcal/mol@LB@Unfolding Energy - sRNA 6.28641 kcal/mol@LB@@LB@Position - mRNA 170 -- 200@LB@Position - sRNA 29 -- 59@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 30 |
0.002455 |
0.2686 |
b4551 |
yheV |
-11.67 |
0.043500 |
186 -- 213 |
38 -- 63 |
DUF2387 family putative metal-binding protein |
|
_____________185__________________________214\n_____________|____________________________|\n5'-AUC...AAUUU______A_______G_U____A__C___AACGU...UUG-3'\n______________GAGUAG_GGGUAAA_A_GGCA_UC_GAA\n______________:|:|||_|||||||_|_|:||_||_|||\n______________UUUAUC_CCCAUUU_U_CUGU_AG_CUU\n3'-UUU...CCAAC______________G______A__U___UACUU...UCG-5'\n_____________|____________________________|\n_____________64___________________________37\n |
193 -- 199 |
51 -- 57 |
-22.6178 kcal/mol |
4.69416 kcal/mol |
6.25833 kcal/mol |
185 214@LB@ | |@LB@5'-AUC...AAUUU A G U A C AACGU...UUG-3'@LB@ GAGUAG GGGUAAA A GGCA UC GAA@LB@ :|:||| ||||||| | |:|| || |||@LB@ UUUAUC CCCAUUU U CUGU AG CUU@LB@3'-UUU...CCAAC G A U UACUU...UCG-5'@LB@ | |@LB@ 64 37@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -22.6178 kcal/mol@LB@Unfolding Energy - mRNA 4.69416 kcal/mol@LB@Unfolding Energy - sRNA 6.25833 kcal/mol@LB@@LB@Position - mRNA 186 -- 213@LB@Position - sRNA 38 -- 63@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 51 -- 57@LB@ |
